Wall clock time and date at job start Tue Mar 31 2020 00:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47278 * 2 1 4 4 C 1.50706 * 110.42921 * 62.47407 * 3 2 1 5 5 O 1.21275 * 119.99434 * 237.17553 * 4 3 2 6 6 N 1.34780 * 119.99990 * 57.17832 * 4 3 2 7 7 C 1.46923 * 120.63094 * 4.57734 * 6 4 3 8 8 C 1.53626 * 108.54342 * 126.36679 * 7 6 4 9 9 C 1.53041 * 109.24069 * 54.85746 * 8 7 6 10 10 C 1.50696 * 109.46053 * 178.49210 * 9 8 7 11 11 H 1.07998 * 120.00621 * 120.06248 * 10 9 8 12 12 C 1.37887 * 119.99700 * 300.06249 * 10 9 8 13 13 N 1.31515 * 120.00022 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99734 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47131 * 90.00319 * 14 12 10 16 16 H 1.48501 * 109.46760 * 210.00383 * 14 12 10 17 17 H 1.48501 * 109.47233 * 330.00076 * 14 12 10 18 18 C 1.53045 * 109.53444 * 298.50730 * 9 8 7 19 19 C 1.46926 * 120.62597 * 184.85436 * 6 4 3 20 20 C 1.54891 * 110.48656 * 185.01345 * 3 2 1 21 21 C 1.54889 * 102.91259 * 156.66236 * 20 3 2 22 22 C 1.54458 * 104.10291 * 322.30095 * 21 20 3 23 23 C 1.53885 * 106.68502 * 23.34320 * 22 21 20 24 24 H 1.09007 * 109.46942 * 174.99994 * 1 2 3 25 25 H 1.08994 * 109.47001 * 295.00728 * 1 2 3 26 26 H 1.09004 * 109.47075 * 55.00886 * 1 2 3 27 27 H 1.09009 * 109.47576 * 240.00081 * 2 1 3 28 28 H 1.08998 * 109.47269 * 120.00734 * 2 1 3 29 29 H 1.09001 * 109.58463 * 246.19845 * 7 6 4 30 30 H 1.08996 * 109.58678 * 6.62289 * 7 6 4 31 31 H 1.08989 * 109.63496 * 294.86194 * 8 7 6 32 32 H 1.09000 * 109.43063 * 174.71883 * 8 7 6 33 33 H 1.09003 * 109.46347 * 58.52419 * 9 8 7 34 34 H 0.96994 * 120.00191 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.49620 * 301.41582 * 18 9 8 36 36 H 1.09001 * 109.49867 * 181.31697 * 18 9 8 37 37 H 1.08996 * 109.58761 * 353.37333 * 19 6 4 38 38 H 1.08995 * 109.58467 * 113.80394 * 19 6 4 39 39 H 1.09001 * 110.75735 * 275.06923 * 20 3 2 40 40 H 1.08998 * 110.75567 * 38.25307 * 20 3 2 41 41 H 1.09004 * 110.48278 * 80.82721 * 21 20 3 42 42 H 1.08999 * 110.48765 * 203.46670 * 21 20 3 43 43 H 1.08994 * 109.86140 * 264.10080 * 22 21 20 44 44 H 1.09007 * 110.16691 * 142.74298 * 22 21 20 45 45 H 1.08995 * 110.02934 * 240.87351 * 23 22 21 46 46 H 1.09002 * 110.07184 * 119.46347 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6000 2.1560 1.2524 5 8 0.9495 3.1764 1.1721 6 7 1.9295 1.6602 2.4616 7 6 2.8003 0.4823 2.5757 8 6 3.9736 0.8303 3.5045 9 6 3.4259 1.3383 4.8402 10 6 4.5724 1.6461 5.7684 11 1 4.7020 2.6469 6.1532 12 6 5.4560 0.6500 6.1265 13 7 5.2985 -0.5685 5.6575 14 14 6.8776 1.0318 7.2766 15 1 6.4496 0.8145 8.6818 16 1 8.0213 0.1377 6.9635 17 1 7.2923 2.4465 7.0985 18 6 2.6040 2.6080 4.6066 19 6 1.4198 2.2836 3.6905 20 6 3.5834 1.4718 -0.1268 21 6 3.8563 2.8811 -0.7085 22 6 2.6954 3.1096 -1.7014 23 6 1.5432 2.1938 -1.2523 24 1 -0.3633 -1.0238 -0.0896 25 1 -0.3633 0.4344 0.9313 26 1 -0.3633 0.5893 -0.8419 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.2350 -0.3510 2.9930 30 1 3.1801 0.2119 1.5905 31 1 4.5874 1.6047 3.0447 32 1 4.5780 -0.0607 3.6744 33 1 2.7920 0.5727 5.2876 34 1 5.9199 -1.2693 5.9097 35 1 3.2308 3.3657 4.1364 36 1 2.2337 2.9824 5.5609 37 1 0.8885 3.2021 3.4410 38 1 0.7442 1.5943 4.1968 39 1 4.0535 1.3595 0.8502 40 1 3.9295 0.6975 -0.8115 41 1 3.8333 3.6311 0.0821 42 1 4.8151 2.9009 -1.2267 43 1 3.0126 2.8435 -2.7096 44 1 2.3766 4.1517 -1.6734 45 1 1.3013 1.4832 -2.0426 46 1 0.6651 2.7908 -1.0057 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334331910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:17 Heat of formation + Delta-G solvation = -56.369870 kcal Electronic energy + Delta-G solvation = -23908.146946 eV Core-core repulsion = 20796.605839 eV Total energy + Delta-G solvation = -3111.541107 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.68888 -37.57770 -36.46486 -33.77275 -33.04726 -31.19781 -30.18398 -28.56425 -27.75513 -26.19435 -23.47556 -23.01184 -22.16192 -21.22807 -20.38939 -19.17455 -17.98866 -16.42358 -16.08291 -15.84243 -15.54367 -14.57374 -14.54828 -14.47015 -13.95778 -13.29927 -13.13689 -13.02789 -12.93996 -12.69515 -12.62833 -12.21248 -12.07117 -11.58749 -11.38923 -11.26893 -11.11964 -11.04947 -10.96238 -10.76515 -10.59160 -10.47169 -10.42048 -10.31553 -10.25182 -10.09298 -9.63652 -9.21035 -9.15525 -8.84033 -8.38530 -7.93882 -6.04302 -4.10203 3.07223 3.27253 3.34368 3.38035 3.53656 4.39946 4.52416 4.66873 4.69055 5.05473 5.18724 5.24986 5.29727 5.34964 5.51657 5.60995 5.62341 5.69734 5.77194 5.82650 5.85783 5.92833 5.95736 6.02103 6.03398 6.06944 6.13252 6.15284 6.19665 6.24264 6.29910 6.36019 6.39691 6.46704 6.52368 6.67768 6.92266 7.05111 7.17022 7.28227 7.65869 7.91332 8.00086 8.03999 8.39532 8.66179 8.93169 9.54887 11.01138 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024189 B = 0.005032 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.258359 B = 5562.939705 C = 5721.349810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.080 4.080 4 C 0.529 3.471 5 O -0.558 6.558 6 N -0.597 5.597 7 C 0.088 3.912 8 C -0.123 4.123 9 C 0.049 3.951 10 C -0.511 4.511 11 H 0.054 0.946 12 C 0.062 3.938 13 N -0.892 5.892 14 Si 0.890 3.110 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.122 4.122 19 C 0.111 3.889 20 C -0.125 4.125 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.104 4.104 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.104 0.896 33 H 0.027 0.973 34 H 0.260 0.740 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.496 0.157 -12.941 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.083 4.083 4 C 0.317 3.683 5 O -0.438 6.438 6 N -0.329 5.329 7 C -0.034 4.034 8 C -0.162 4.162 9 C 0.031 3.969 10 C -0.549 4.549 11 H 0.072 0.928 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.161 4.161 19 C -0.011 4.011 20 C -0.162 4.162 21 C -0.162 4.162 22 C -0.158 4.158 23 C -0.142 4.142 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.122 0.878 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.754 0.515 -12.954 14.184 hybrid contribution 0.891 0.063 0.768 1.178 sum -4.863 0.577 -12.187 13.134 Atomic orbital electron populations 1.21789 0.95580 1.01420 1.02162 1.21889 0.96486 0.94143 1.03465 1.21586 0.96940 0.95908 0.93872 1.20217 0.79144 0.84370 0.84538 1.90592 1.41553 1.24793 1.86815 1.48130 1.48699 1.30730 1.05331 1.22554 0.92906 0.86606 1.01317 1.22103 0.95420 1.03182 0.95449 1.18626 0.94202 0.91517 0.92599 1.21210 1.10763 0.95705 1.27246 0.92757 1.24950 0.97754 0.95062 0.96142 1.69831 1.37572 1.01167 1.44541 0.86629 0.82120 0.78229 0.81235 1.20726 1.21253 1.19995 1.21997 0.95948 1.00788 0.97338 1.21677 0.96982 0.97788 0.84679 1.22872 0.92968 0.97798 1.02598 1.22377 0.98046 0.97008 0.98740 1.22113 0.95302 0.99884 0.98452 1.22104 0.99268 0.97921 0.94897 0.92658 0.92818 0.92502 0.91122 0.89964 0.92207 0.89681 0.94248 0.87835 0.95538 0.92997 0.93025 0.92307 0.90487 0.92407 0.89461 0.90522 0.91615 0.91571 0.92233 0.91937 0.91602 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.48 37.16 0.35 -1.45 16 2 C -0.12 -1.48 4.52 -26.73 -0.12 -1.60 16 3 C -0.08 -1.11 0.27 -154.00 -0.04 -1.15 16 4 C 0.53 9.24 5.34 -10.98 -0.06 9.18 16 5 O -0.56 -11.29 14.86 5.56 0.08 -11.21 16 6 N -0.60 -10.70 2.96 -172.50 -0.51 -11.21 16 7 C 0.09 1.54 3.93 -3.49 -0.01 1.53 16 8 C -0.12 -2.66 4.99 -26.38 -0.13 -2.79 16 9 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 10 C -0.51 -13.54 8.56 -34.44 -0.29 -13.83 16 11 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 12 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 13 N -0.89 -24.17 11.30 55.43 0.63 -23.54 16 14 Si 0.89 20.75 29.54 -169.99 -5.02 15.72 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 C -0.12 -2.53 5.30 -26.61 -0.14 -2.67 16 19 C 0.11 2.06 6.44 -3.71 -0.02 2.04 16 20 C -0.12 -1.65 4.90 -24.74 -0.12 -1.77 16 21 C -0.12 -1.62 6.64 -24.97 -0.17 -1.78 16 22 C -0.12 -1.45 6.81 -25.51 -0.17 -1.62 16 23 C -0.10 -1.33 4.59 -25.61 -0.12 -1.45 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.74 7.52 -51.93 -0.39 0.35 16 26 H 0.06 0.64 6.95 -51.93 -0.36 0.28 16 27 H 0.07 0.72 8.12 -51.92 -0.42 0.30 16 28 H 0.08 1.04 4.89 -51.93 -0.25 0.79 16 29 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 30 H 0.09 1.30 3.06 -51.93 -0.16 1.14 16 31 H 0.04 0.87 7.81 -51.94 -0.41 0.46 16 32 H 0.10 2.49 6.03 -51.93 -0.31 2.17 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 1.31 5.15 -51.93 -0.27 1.04 16 40 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 45 H 0.07 0.71 7.60 -51.93 -0.39 0.31 16 46 H 0.08 1.17 6.89 -51.93 -0.36 0.81 16 LS Contribution 335.54 15.07 5.06 5.06 Total: -1.00 -28.29 335.54 -8.97 -37.26 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.87 Total: 2.76 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -1.34 Total: -14.85 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.12 Total: -34.75 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.21 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.29 -8.97 -37.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334331910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.106 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds