Wall clock time and date at job start Tue Mar 31 2020 01:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47240 * 2 1 4 4 C 1.53008 * 109.46871 * 119.99552 * 2 1 3 5 5 C 1.52996 * 115.56372 * 280.35149 * 4 2 1 6 6 C 1.52998 * 117.49617 * 66.04172 * 4 2 1 7 7 C 1.53001 * 60.03185 * 107.49854 * 6 4 2 8 8 H 1.09003 * 117.50007 * 107.47662 * 7 6 4 9 9 C 1.50701 * 117.49810 * 252.47114 * 7 6 4 10 10 O 1.21285 * 119.99652 * 121.43055 * 9 7 6 11 11 N 1.34772 * 120.00245 * 301.43242 * 9 7 6 12 12 C 1.46927 * 120.63007 * 359.72260 * 11 9 7 13 13 C 1.52764 * 109.00593 * 233.58024 * 12 11 9 14 14 C 1.53033 * 109.38552 * 305.58686 * 13 12 11 15 15 C 1.50704 * 109.44870 * 181.25486 * 14 13 12 16 16 H 1.08004 * 119.99715 * 239.93983 * 15 14 13 17 17 C 1.37869 * 120.00116 * 59.94046 * 15 14 13 18 18 N 1.31522 * 119.99918 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00070 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47363 * 89.99864 * 19 17 15 21 21 H 1.48503 * 109.46813 * 209.99931 * 19 17 15 22 22 H 1.48503 * 109.46852 * 329.99417 * 19 17 15 23 23 C 1.53045 * 109.53683 * 61.24280 * 14 13 12 24 24 C 1.46924 * 120.63169 * 179.97438 * 11 9 7 25 25 H 1.09004 * 109.46760 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46942 * 300.00171 * 1 2 3 27 27 H 1.08994 * 109.46758 * 60.00137 * 1 2 3 28 28 H 1.09001 * 109.47230 * 239.99400 * 2 1 3 29 29 H 1.08998 * 109.47062 * 178.41291 * 3 2 1 30 30 H 1.09004 * 109.46394 * 298.40771 * 3 2 1 31 31 H 1.08998 * 109.47284 * 58.40427 * 3 2 1 32 32 H 1.08991 * 109.47490 * 154.29506 * 5 4 2 33 33 H 1.08997 * 109.47188 * 274.30251 * 5 4 2 34 34 H 1.08998 * 109.47049 * 34.29646 * 5 4 2 35 35 H 1.09005 * 117.50277 * 0.02562 * 6 4 2 36 36 H 1.09001 * 117.49867 * 215.00151 * 6 4 2 37 37 H 1.08997 * 109.58678 * 353.41909 * 12 11 9 38 38 H 1.09001 * 109.58881 * 113.84010 * 12 11 9 39 39 H 1.09004 * 109.55948 * 185.54921 * 13 12 11 40 40 H 1.09003 * 109.35845 * 65.50282 * 13 12 11 41 41 H 1.09000 * 109.46025 * 301.21935 * 14 13 12 42 42 H 0.97006 * 119.99630 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.49797 * 178.68697 * 23 14 13 44 44 H 1.08995 * 109.49975 * 58.58331 * 23 14 13 45 45 H 1.08998 * 109.58956 * 246.15714 * 24 11 9 46 46 H 1.09002 * 109.58492 * 6.44241 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 2.0262 0.1022 2.5388 6 6 1.7558 -2.2201 1.3652 7 6 3.1752 -1.7320 1.0684 8 1 3.9118 -1.8100 1.8681 9 6 3.7057 -1.9416 -0.3265 10 8 4.0660 -0.9906 -0.9874 11 7 3.7797 -3.1857 -0.8395 12 6 3.3526 -4.3481 -0.0488 13 6 4.4881 -5.3694 -0.0125 14 6 4.9155 -5.7047 -1.4432 15 6 6.0146 -6.7352 -1.4100 16 1 6.9795 -6.5095 -1.8396 17 6 5.7885 -7.9660 -0.8314 18 7 4.6136 -8.2406 -0.3079 19 14 7.1511 -9.2431 -0.7897 20 1 7.9439 -9.0806 0.4554 21 1 6.5560 -10.6032 -0.8237 22 1 8.0367 -9.0606 -1.9678 23 6 5.4246 -4.4383 -2.1354 24 6 4.2940 -3.4059 -2.1980 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 3.1297 1.4426 0.0285 30 1 1.7002 1.9479 -0.9040 31 1 1.6536 1.9645 0.8753 32 1 1.9556 -0.5668 3.3964 33 1 2.9446 0.6853 2.6074 34 1 1.1686 0.7748 2.5312 35 1 1.2060 -2.6926 0.5512 36 1 1.5587 -2.6196 2.3600 37 1 3.1149 -4.0317 0.9669 38 1 2.4733 -4.7995 -0.5082 39 1 4.1475 -6.2761 0.4875 40 1 5.3345 -4.9496 0.5312 41 1 4.0623 -6.1014 -1.9935 42 1 4.4546 -9.1065 0.0995 43 1 5.7506 -4.6823 -3.1465 44 1 6.2621 -4.0273 -1.5718 45 1 3.4930 -3.7790 -2.8360 46 1 4.6751 -2.4675 -2.6010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336079646.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:04 Heat of formation + Delta-G solvation = -36.555867 kcal Electronic energy + Delta-G solvation = -23098.586621 eV Core-core repulsion = 19987.904714 eV Total energy + Delta-G solvation = -3110.681907 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.35746 -38.09912 -36.53488 -33.76383 -33.20187 -31.16044 -30.10180 -28.65660 -27.05659 -26.27374 -24.11705 -22.82634 -22.35409 -22.07928 -19.91664 -18.77110 -17.70791 -16.68847 -16.05571 -15.76887 -15.65142 -14.56422 -14.35724 -14.13260 -13.89472 -13.37836 -13.14364 -13.07180 -12.82992 -12.66103 -12.57717 -12.36674 -12.22204 -12.01301 -11.74340 -11.66120 -11.26600 -11.18440 -11.10961 -10.94312 -10.65418 -10.50172 -10.38317 -10.10043 -10.06285 -9.69809 -9.62446 -9.24501 -9.16870 -8.86955 -8.38438 -7.96478 -6.04000 -4.10052 3.00566 3.27480 3.34565 3.37109 3.38283 3.75736 4.40152 4.55078 4.69560 4.78297 4.90378 5.19072 5.25698 5.29125 5.37070 5.45191 5.63285 5.64801 5.69701 5.73542 5.74867 5.84824 5.87588 5.90410 5.96622 6.00736 6.02197 6.08544 6.13315 6.16349 6.26936 6.36303 6.41928 6.47432 6.50302 6.66942 6.90712 7.04887 7.16500 7.28832 7.66078 7.91561 7.97610 8.04105 8.39685 8.62461 8.93321 9.55098 11.01463 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.033200 B = 0.004031 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.167331 B = 6944.893834 C = 7286.687258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C -0.137 4.137 4 C -0.090 4.090 5 C -0.113 4.113 6 C -0.159 4.159 7 C -0.172 4.172 8 H 0.127 0.873 9 C 0.541 3.459 10 O -0.553 6.553 11 N -0.595 5.595 12 C 0.104 3.896 13 C -0.125 4.125 14 C 0.048 3.952 15 C -0.512 4.512 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.123 4.123 24 C 0.111 3.889 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.037 0.963 41 H 0.027 0.973 42 H 0.260 0.740 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.058 0.942 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 13.382 4.469 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 C -0.194 4.194 4 C -0.090 4.090 5 C -0.170 4.170 6 C -0.196 4.196 7 C -0.193 4.193 8 H 0.144 0.856 9 C 0.329 3.671 10 O -0.432 6.432 11 N -0.327 5.327 12 C -0.018 4.018 13 C -0.163 4.163 14 C 0.030 3.970 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.161 4.161 24 C -0.011 4.011 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.161 13.711 4.195 16.498 hybrid contribution 0.853 -1.051 0.167 1.364 sum -7.309 12.659 4.362 15.255 Atomic orbital electron populations 1.21819 0.95350 1.01611 1.01281 1.20710 0.94807 0.96554 0.96113 1.21725 1.01868 0.95135 1.00694 1.21584 0.99664 0.90669 0.97127 1.21348 1.02071 0.99364 0.94208 1.23278 0.96572 0.96372 1.03379 1.22346 0.93301 1.06831 0.96790 0.85553 1.19590 0.77966 0.82635 0.86906 1.90628 1.50229 1.40836 1.61491 1.48233 1.62120 1.06279 1.16111 1.21996 0.98993 0.86305 0.94515 1.21946 0.95063 0.97818 1.01480 1.18636 0.96325 0.90518 0.91527 1.21214 0.98376 0.98084 1.37319 0.92738 1.24951 0.95473 0.98173 0.95324 1.69842 1.21631 1.22568 1.39064 0.86621 0.82220 0.80900 0.78426 1.20746 1.21244 1.19965 1.22007 0.96445 0.96749 1.00892 1.21697 0.97129 0.99984 0.82295 0.92778 0.92852 0.92915 0.90245 0.92006 0.93253 0.93139 0.92459 0.92041 0.91852 0.88322 0.87967 0.90850 0.92295 0.87786 0.94394 0.95502 0.93002 0.92215 0.93010 0.92346 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.07 37.16 0.34 -1.14 16 2 C -0.06 -0.79 2.32 -90.61 -0.21 -1.00 16 3 C -0.14 -1.60 8.66 37.16 0.32 -1.27 16 4 C -0.09 -1.06 1.78 -154.47 -0.27 -1.33 16 5 C -0.11 -1.08 8.62 37.16 0.32 -0.76 16 6 C -0.16 -1.86 7.19 -26.73 -0.19 -2.05 16 7 C -0.17 -2.39 4.69 -91.73 -0.43 -2.82 16 8 H 0.13 1.67 8.14 -51.93 -0.42 1.25 16 9 C 0.54 9.46 6.21 -10.99 -0.07 9.40 16 10 O -0.55 -10.98 14.93 5.55 0.08 -10.90 16 11 N -0.60 -10.74 2.98 -173.00 -0.52 -11.26 16 12 C 0.10 1.86 5.69 -3.93 -0.02 1.83 16 13 C -0.12 -2.74 5.14 -26.84 -0.14 -2.88 16 14 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 15 C -0.51 -13.65 8.56 -34.44 -0.29 -13.94 16 16 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 18 N -0.89 -24.34 11.30 55.43 0.63 -23.71 16 19 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 23 C -0.12 -2.54 5.30 -26.59 -0.14 -2.68 16 24 C 0.11 2.06 6.44 -3.69 -0.02 2.04 16 25 H 0.05 0.56 7.72 -51.93 -0.40 0.15 16 26 H 0.05 0.49 7.62 -51.93 -0.40 0.09 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.22 5.78 -51.93 -0.30 0.92 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.50 6.85 -51.93 -0.36 0.14 16 32 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.54 6.87 -51.93 -0.36 0.18 16 35 H 0.10 1.21 7.79 -51.93 -0.40 0.81 16 36 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 37 H 0.07 1.15 5.20 -51.93 -0.27 0.87 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.10 2.54 6.03 -51.93 -0.31 2.23 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.08 1.44 7.00 -51.93 -0.36 1.07 16 LS Contribution 349.54 15.07 5.27 5.27 Total: -1.00 -28.36 349.54 -8.84 -37.20 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -8.18 Total: 1.70 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -1.10 Total: -14.10 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.11 Total: -34.97 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.36 -8.84 -37.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336079646.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.649 kcal (2) G-P(sol) polarization free energy of solvation -28.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds