Wall clock time and date at job start Tue Mar 31 2020 01:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47240 * 2 1 4 4 C 1.53008 * 109.46871 * 119.99552 * 2 1 3 5 5 C 1.52996 * 115.56372 * 280.35149 * 4 2 1 6 6 C 1.52998 * 117.49617 * 66.04172 * 4 2 1 7 7 C 1.53001 * 60.03185 * 107.49854 * 6 4 2 8 8 H 1.09003 * 117.50007 * 107.47662 * 7 6 4 9 9 C 1.50701 * 117.49810 * 252.47114 * 7 6 4 10 10 O 1.21285 * 119.99652 * 121.43055 * 9 7 6 11 11 N 1.34772 * 120.00245 * 301.43242 * 9 7 6 12 12 C 1.46927 * 120.63007 * 359.72260 * 11 9 7 13 13 C 1.52764 * 109.00593 * 233.58024 * 12 11 9 14 14 C 1.53033 * 109.38552 * 305.58686 * 13 12 11 15 15 C 1.50704 * 109.44870 * 181.25486 * 14 13 12 16 16 H 1.08004 * 119.99715 * 239.93983 * 15 14 13 17 17 C 1.37869 * 120.00116 * 59.94046 * 15 14 13 18 18 N 1.31522 * 119.99918 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00070 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47363 * 89.99864 * 19 17 15 21 21 H 1.48503 * 109.46813 * 209.99931 * 19 17 15 22 22 H 1.48503 * 109.46852 * 329.99417 * 19 17 15 23 23 C 1.53045 * 109.53683 * 61.24280 * 14 13 12 24 24 C 1.46924 * 120.63169 * 179.97438 * 11 9 7 25 25 H 1.09004 * 109.46760 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46942 * 300.00171 * 1 2 3 27 27 H 1.08994 * 109.46758 * 60.00137 * 1 2 3 28 28 H 1.09001 * 109.47230 * 239.99400 * 2 1 3 29 29 H 1.08998 * 109.47062 * 178.41291 * 3 2 1 30 30 H 1.09004 * 109.46394 * 298.40771 * 3 2 1 31 31 H 1.08998 * 109.47284 * 58.40427 * 3 2 1 32 32 H 1.08991 * 109.47490 * 154.29506 * 5 4 2 33 33 H 1.08997 * 109.47188 * 274.30251 * 5 4 2 34 34 H 1.08998 * 109.47049 * 34.29646 * 5 4 2 35 35 H 1.09005 * 117.50277 * 0.02562 * 6 4 2 36 36 H 1.09001 * 117.49867 * 215.00151 * 6 4 2 37 37 H 1.08997 * 109.58678 * 353.41909 * 12 11 9 38 38 H 1.09001 * 109.58881 * 113.84010 * 12 11 9 39 39 H 1.09004 * 109.55948 * 185.54921 * 13 12 11 40 40 H 1.09003 * 109.35845 * 65.50282 * 13 12 11 41 41 H 1.09000 * 109.46025 * 301.21935 * 14 13 12 42 42 H 0.97006 * 119.99630 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.49797 * 178.68697 * 23 14 13 44 44 H 1.08995 * 109.49975 * 58.58331 * 23 14 13 45 45 H 1.08998 * 109.58956 * 246.15714 * 24 11 9 46 46 H 1.09002 * 109.58492 * 6.44241 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 2.0262 0.1022 2.5388 6 6 1.7558 -2.2201 1.3652 7 6 3.1752 -1.7320 1.0684 8 1 3.9118 -1.8100 1.8681 9 6 3.7057 -1.9416 -0.3265 10 8 4.0660 -0.9906 -0.9874 11 7 3.7797 -3.1857 -0.8395 12 6 3.3526 -4.3481 -0.0488 13 6 4.4881 -5.3694 -0.0125 14 6 4.9155 -5.7047 -1.4432 15 6 6.0146 -6.7352 -1.4100 16 1 6.9795 -6.5095 -1.8396 17 6 5.7885 -7.9660 -0.8314 18 7 4.6136 -8.2406 -0.3079 19 14 7.1511 -9.2431 -0.7897 20 1 7.9439 -9.0806 0.4554 21 1 6.5560 -10.6032 -0.8237 22 1 8.0367 -9.0606 -1.9678 23 6 5.4246 -4.4383 -2.1354 24 6 4.2940 -3.4059 -2.1980 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 3.1297 1.4426 0.0285 30 1 1.7002 1.9479 -0.9040 31 1 1.6536 1.9645 0.8753 32 1 1.9556 -0.5668 3.3964 33 1 2.9446 0.6853 2.6074 34 1 1.1686 0.7748 2.5312 35 1 1.2060 -2.6926 0.5512 36 1 1.5587 -2.6196 2.3600 37 1 3.1149 -4.0317 0.9669 38 1 2.4733 -4.7995 -0.5082 39 1 4.1475 -6.2761 0.4875 40 1 5.3345 -4.9496 0.5312 41 1 4.0623 -6.1014 -1.9935 42 1 4.4546 -9.1065 0.0995 43 1 5.7506 -4.6823 -3.1465 44 1 6.2621 -4.0273 -1.5718 45 1 3.4930 -3.7790 -2.8360 46 1 4.6751 -2.4675 -2.6010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336079646.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:03 Heat of formation + Delta-G solvation = -50.127130 kcal Electronic energy + Delta-G solvation = -23099.175115 eV Core-core repulsion = 19987.904714 eV Total energy + Delta-G solvation = -3111.270401 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61876 -39.36606 -38.06059 -35.37115 -34.43616 -32.89749 -31.74708 -29.52395 -28.19065 -27.78381 -25.58729 -24.11937 -23.72642 -23.44880 -21.41215 -20.18116 -18.86908 -18.48853 -17.65281 -17.02536 -16.84850 -16.49403 -15.58796 -15.36051 -14.91494 -14.85742 -14.68206 -14.42829 -14.27221 -13.98720 -13.84228 -13.46055 -13.32989 -13.08207 -13.07959 -12.96981 -12.80437 -12.60431 -12.46765 -12.16169 -12.10277 -12.02173 -11.93051 -11.49458 -11.43941 -11.08873 -11.02259 -10.93109 -10.64037 -10.47466 -10.32372 -9.52429 -8.08302 -6.21616 1.40981 1.43033 1.51931 1.64290 2.06405 2.43813 2.71696 3.18181 3.48292 3.67183 3.83559 3.95899 4.10253 4.17981 4.28415 4.37505 4.41373 4.47100 4.50190 4.56283 4.59214 4.76034 4.80286 4.84133 4.85838 4.90435 4.95076 4.98324 5.03748 5.05026 5.11361 5.17079 5.21651 5.24628 5.25239 5.39035 5.42989 5.51423 5.56248 5.61264 5.65802 5.97631 6.12854 6.38699 6.54912 6.87370 7.22322 7.46090 8.95170 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.033200 B = 0.004031 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.167331 B = 6944.893834 C = 7286.687258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.067 4.067 3 C -0.133 4.133 4 C -0.081 4.081 5 C -0.111 4.111 6 C -0.146 4.146 7 C -0.195 4.195 8 H 0.136 0.864 9 C 0.539 3.461 10 O -0.580 6.580 11 N -0.601 5.601 12 C 0.118 3.882 13 C -0.115 4.115 14 C 0.046 3.954 15 C -0.537 4.537 16 H 0.046 0.954 17 C 0.020 3.980 18 N -0.911 5.911 19 Si 0.948 3.052 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.274 1.274 23 C -0.112 4.112 24 C 0.116 3.884 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.025 0.975 41 H 0.003 0.997 42 H 0.262 0.738 43 H 0.062 0.938 44 H 0.040 0.960 45 H 0.068 0.932 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.366 14.108 5.962 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.086 4.086 3 C -0.190 4.190 4 C -0.081 4.081 5 C -0.168 4.168 6 C -0.183 4.183 7 C -0.216 4.216 8 H 0.154 0.846 9 C 0.329 3.671 10 O -0.461 6.461 11 N -0.332 5.332 12 C -0.004 4.004 13 C -0.154 4.154 14 C 0.027 3.973 15 C -0.575 4.575 16 H 0.064 0.936 17 C -0.179 4.179 18 N -0.550 5.550 19 Si 0.775 3.225 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.198 1.198 23 C -0.151 4.151 24 C -0.006 4.006 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.146 0.854 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.044 0.956 41 H 0.021 0.979 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.277 14.442 5.692 18.084 hybrid contribution 1.215 -1.260 -0.351 1.785 sum -8.063 13.182 5.341 16.349 Atomic orbital electron populations 1.21771 0.93489 1.01925 1.02321 1.20703 0.96343 0.96516 0.95030 1.21687 1.00323 0.95123 1.01861 1.21725 0.97509 0.91002 0.97881 1.21383 1.02627 0.99543 0.93209 1.23386 0.94045 0.96420 1.04421 1.22364 0.94667 1.10057 0.94473 0.84645 1.20216 0.77052 0.81733 0.88080 1.90608 1.51317 1.41515 1.62658 1.48284 1.62363 1.06751 1.15841 1.21828 0.97125 0.85258 0.96165 1.21719 0.95983 0.97985 0.99675 1.18607 0.94809 0.91183 0.92692 1.21539 0.98820 0.99413 1.37715 0.93613 1.25613 0.97496 0.99829 0.95010 1.69947 1.22861 1.22972 1.39226 0.85707 0.79754 0.78696 0.78386 1.20283 1.20709 1.19848 1.21850 0.96769 0.95994 1.00459 1.21567 0.96642 0.99162 0.83244 0.92835 0.91023 0.92683 0.93774 0.94340 0.93141 0.90856 0.90952 0.92296 0.90352 0.88964 0.85433 0.88057 0.91961 0.90094 0.95626 0.97865 0.92871 0.91917 0.94158 0.91412 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.07 71.98 0.65 -1.86 16 2 C -0.07 -1.57 2.32 -10.79 -0.03 -1.60 16 3 C -0.13 -2.92 8.66 71.98 0.62 -2.29 16 4 C -0.08 -1.71 1.78 -52.16 -0.09 -1.81 16 5 C -0.11 -1.74 8.62 71.98 0.62 -1.12 16 6 C -0.15 -3.01 7.19 30.59 0.22 -2.79 16 7 C -0.19 -5.11 4.69 -11.51 -0.05 -5.17 16 8 H 0.14 3.32 8.14 -2.39 -0.02 3.30 16 9 C 0.54 18.66 6.21 87.66 0.54 19.21 16 10 O -0.58 -23.27 14.93 -3.05 -0.05 -23.32 16 11 N -0.60 -21.52 2.98 -819.65 -2.44 -23.96 16 12 C 0.12 4.14 5.69 86.22 0.49 4.63 16 13 C -0.11 -5.12 5.14 30.53 0.16 -4.96 16 14 C 0.05 2.22 2.07 -11.51 -0.02 2.20 16 15 C -0.54 -29.19 8.56 25.60 0.22 -28.97 16 16 H 0.05 2.50 7.74 -2.91 -0.02 2.47 16 17 C 0.02 1.06 5.30 84.65 0.45 1.51 16 18 N -0.91 -50.11 11.30 21.45 0.24 -49.87 16 19 Si 0.95 42.83 29.54 68.60 2.03 44.86 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 23 C -0.11 -4.75 5.30 30.69 0.16 -4.58 16 24 C 0.12 4.35 6.44 86.38 0.56 4.90 16 25 H 0.05 0.98 7.72 -2.39 -0.02 0.96 16 26 H 0.07 1.05 7.62 -2.38 -0.02 1.03 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.04 1.35 5.78 -2.39 -0.01 1.34 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.07 1.25 6.85 -2.39 -0.02 1.23 16 32 H 0.07 0.94 7.90 -2.39 -0.02 0.92 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.01 6.87 -2.39 -0.02 1.00 16 35 H 0.09 2.06 7.79 -2.38 -0.02 2.04 16 36 H 0.13 2.01 8.05 -2.39 -0.02 2.00 16 37 H 0.10 2.98 5.20 -2.39 -0.01 2.97 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.08 4.01 6.03 -2.38 -0.01 4.00 16 40 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.26 13.73 8.31 -92.70 -0.77 12.96 16 43 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.08 2.92 7.00 -2.39 -0.02 2.90 16 Total: -1.00 -61.83 349.54 5.21 -56.62 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.93 Total: 18.38 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 4.50 Total: -22.70 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -2.20 Total: -73.83 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -61.83 5.21 -56.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336079646.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.491 kcal (2) G-P(sol) polarization free energy of solvation -61.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds