Wall clock time and date at job start Tue Mar 31 2020 01:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47003 * 2 1 4 4 C 1.52995 * 109.47711 * 120.00095 * 2 1 3 5 5 C 1.53007 * 115.55814 * 32.65866 * 4 2 1 6 6 C 1.53080 * 117.51647 * 246.95972 * 4 2 1 7 7 C 1.52998 * 59.98385 * 252.51926 * 6 4 2 8 8 H 1.08997 * 117.49970 * 252.50318 * 7 6 4 9 9 C 1.50696 * 117.50007 * 107.49895 * 7 6 4 10 10 O 1.21280 * 120.00166 * 263.96619 * 9 7 6 11 11 N 1.34774 * 119.99836 * 83.96515 * 9 7 6 12 12 C 1.46929 * 120.63089 * 179.97438 * 11 9 7 13 13 C 1.53186 * 108.77794 * 233.63156 * 12 11 9 14 14 C 1.53041 * 109.31347 * 305.36446 * 13 12 11 15 15 C 1.50698 * 109.45911 * 181.38401 * 14 13 12 16 16 H 1.07996 * 120.00095 * 354.75757 * 15 14 13 17 17 C 1.37881 * 119.99844 * 174.75364 * 15 14 13 18 18 N 1.31519 * 119.99930 * 0.90215 * 17 15 14 19 19 Si 1.86795 * 120.00297 * 180.62598 * 17 15 14 20 20 H 1.48506 * 109.47070 * 265.28270 * 19 17 15 21 21 H 1.48506 * 109.46867 * 25.28169 * 19 17 15 22 22 H 1.48500 * 109.47652 * 145.28035 * 19 17 15 23 23 C 1.53044 * 109.52617 * 61.37191 * 14 13 12 24 24 C 1.46920 * 120.63301 * 0.02562 * 11 9 7 25 25 H 1.08997 * 109.47155 * 60.00194 * 1 2 3 26 26 H 1.09003 * 109.46596 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46691 * 299.99675 * 1 2 3 28 28 H 1.09004 * 109.47393 * 240.00478 * 2 1 3 29 29 H 1.08998 * 109.47432 * 180.21270 * 3 2 1 30 30 H 1.09001 * 109.47196 * 300.21689 * 3 2 1 31 31 H 1.08998 * 109.46880 * 60.21550 * 3 2 1 32 32 H 1.09002 * 109.46957 * 205.68798 * 5 4 2 33 33 H 1.09001 * 109.47309 * 325.68884 * 5 4 2 34 34 H 1.08996 * 109.46922 * 85.69330 * 5 4 2 35 35 H 1.08998 * 117.49102 * 145.03020 * 6 4 2 36 36 H 1.09006 * 117.52586 * 359.97438 * 6 4 2 37 37 H 1.09000 * 109.58369 * 113.83853 * 12 11 9 38 38 H 1.09005 * 109.58614 * 353.42004 * 12 11 9 39 39 H 1.08997 * 109.49925 * 185.41388 * 13 12 11 40 40 H 1.09001 * 109.52769 * 65.33214 * 13 12 11 41 41 H 1.08997 * 109.45860 * 301.35882 * 14 13 12 42 42 H 0.97002 * 120.00307 * 179.72262 * 18 17 15 43 43 H 1.08997 * 109.49844 * 58.57780 * 23 14 13 44 44 H 1.08999 * 109.49777 * 178.67799 * 23 14 13 45 45 H 1.08997 * 109.59192 * 246.15865 * 24 11 9 46 46 H 1.09001 * 109.58742 * 6.58914 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 1.1646 -1.8712 1.7512 6 6 2.7769 0.1159 2.2978 7 6 3.5546 -0.8619 1.4148 8 1 3.9273 -1.7740 1.8810 9 6 4.4298 -0.2796 0.3350 10 8 4.0099 -0.1812 -0.7986 11 7 5.6790 0.1320 0.6290 12 6 6.5443 0.7014 -0.4131 13 6 7.8699 -0.0662 -0.4270 14 6 8.4803 -0.0476 0.9762 15 6 9.8012 -0.7728 0.9587 16 1 10.1290 -1.2763 0.0613 17 6 10.5914 -0.7934 2.0885 18 7 10.1842 -0.1952 3.1867 19 14 12.2367 -1.6774 2.0616 20 1 12.0651 -3.0584 2.5802 21 1 12.7467 -1.7317 0.6679 22 1 13.2063 -0.9450 2.9153 23 6 7.5310 -0.7408 1.9563 24 6 6.2019 0.0189 1.9973 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0038 30 1 1.6735 1.9575 -0.8880 31 1 1.6798 1.9552 0.8919 32 1 1.3258 -2.0106 2.8202 33 1 0.1160 -1.6357 1.5696 34 1 1.4285 -2.7866 1.2216 35 1 2.6375 -0.1530 3.3449 36 1 2.8987 1.1805 2.0978 37 1 6.7331 1.7529 -0.1969 38 1 6.0574 0.6075 -1.3838 39 1 8.5568 0.4067 -1.1289 40 1 7.6907 -1.0972 -0.7321 41 1 8.6367 0.9843 1.2905 42 1 10.7382 -0.2131 3.9828 43 1 7.3545 -1.7653 1.6287 44 1 7.9767 -0.7480 2.9510 45 1 6.3628 1.0145 2.4106 46 1 5.4893 -0.5254 2.6170 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336079647.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:07 Heat of formation + Delta-G solvation = -25.530129 kcal Electronic energy + Delta-G solvation = -23153.972563 eV Core-core repulsion = 20043.768768 eV Total energy + Delta-G solvation = -3110.203795 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.53395 -38.18524 -36.44087 -33.63397 -33.02245 -31.17799 -30.14945 -29.31851 -26.62282 -26.04920 -24.14903 -22.93527 -22.52490 -21.94188 -19.75507 -18.53512 -17.96251 -16.92782 -16.19883 -15.66145 -15.44497 -14.55815 -14.43817 -14.38835 -13.81343 -13.34727 -13.14694 -13.12704 -12.89223 -12.76904 -12.55711 -12.37383 -12.18658 -11.79900 -11.61326 -11.48925 -11.31391 -10.96996 -10.95073 -10.78031 -10.65094 -10.60389 -10.39629 -10.15639 -10.11961 -9.72324 -9.56736 -9.14233 -9.10178 -8.89858 -8.39775 -7.96125 -6.05158 -4.09948 2.93972 3.27132 3.34742 3.38292 3.42014 3.79252 4.40316 4.61265 4.70958 4.83021 4.91560 5.17531 5.25848 5.26620 5.42298 5.53520 5.65377 5.69164 5.70280 5.73365 5.75078 5.82802 5.91435 5.93358 5.97293 6.03964 6.08465 6.11502 6.12291 6.16036 6.30398 6.36853 6.44710 6.52447 6.60898 6.65521 6.90091 7.03998 7.14597 7.25275 7.65219 7.89796 7.96010 7.99562 8.39007 8.62445 8.94220 9.55127 11.01947 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035314 B = 0.003966 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.701041 B = 7057.733786 C = 7401.320427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.056 4.056 3 C -0.149 4.149 4 C -0.090 4.090 5 C -0.122 4.122 6 C -0.159 4.159 7 C -0.177 4.177 8 H 0.124 0.876 9 C 0.542 3.458 10 O -0.549 6.549 11 N -0.596 5.596 12 C 0.111 3.889 13 C -0.123 4.123 14 C 0.048 3.952 15 C -0.512 4.512 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.274 1.274 22 H -0.286 1.286 23 C -0.121 4.121 24 C 0.106 3.894 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.031 0.969 42 H 0.260 0.740 43 H 0.039 0.961 44 H 0.095 0.905 45 H 0.061 0.939 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.542 0.680 -0.740 16.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.075 4.075 3 C -0.206 4.206 4 C -0.090 4.090 5 C -0.178 4.178 6 C -0.196 4.196 7 C -0.198 4.198 8 H 0.142 0.858 9 C 0.330 3.670 10 O -0.428 6.428 11 N -0.328 5.328 12 C -0.011 4.011 13 C -0.161 4.161 14 C 0.030 3.970 15 C -0.551 4.551 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.199 1.199 22 H -0.212 1.212 23 C -0.159 4.159 24 C -0.016 4.016 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.113 0.887 45 H 0.079 0.921 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.674 0.783 -1.147 16.731 hybrid contribution 1.219 -0.566 0.312 1.380 sum -15.455 0.216 -0.835 15.479 Atomic orbital electron populations 1.21947 0.95919 1.01299 1.01195 1.20594 0.94115 0.95934 0.96817 1.22086 1.02596 0.95572 1.00301 1.21598 0.90872 0.98981 0.97576 1.21499 0.99506 0.96439 1.00404 1.23379 1.02287 0.97804 0.96141 1.22264 0.93813 1.02509 1.01187 0.85837 1.19547 0.81494 0.77485 0.88438 1.90611 1.73186 1.56833 1.22210 1.48218 1.12796 1.60586 1.11191 1.21693 0.91546 0.96752 0.91078 1.22004 0.93963 0.99047 1.01106 1.18640 0.92913 0.96810 0.88653 1.21204 1.02836 1.33319 0.97703 0.92743 1.24962 0.97943 0.95393 0.95633 1.69887 1.37673 1.43741 1.01742 0.86619 0.83966 0.79661 0.77998 1.20808 1.19915 1.21228 1.21972 0.92141 0.97344 1.04465 1.21973 0.97594 1.00959 0.81054 0.93040 0.92528 0.93028 0.88930 0.91420 0.93308 0.93636 0.92494 0.91141 0.92143 0.88289 0.87910 0.92316 0.90372 0.92154 0.93065 0.95130 0.93021 0.94258 0.88689 0.92085 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.13 37.16 0.30 -1.17 16 2 C -0.06 -0.71 2.36 -90.62 -0.21 -0.93 16 3 C -0.15 -1.95 7.27 37.16 0.27 -1.68 16 4 C -0.09 -1.08 2.48 -154.47 -0.38 -1.46 16 5 C -0.12 -1.18 9.45 37.16 0.35 -0.83 16 6 C -0.16 -1.86 8.94 -26.69 -0.24 -2.10 16 7 C -0.18 -2.45 4.01 -91.77 -0.37 -2.82 16 8 H 0.12 1.64 7.89 -51.93 -0.41 1.23 16 9 C 0.54 9.24 5.67 -10.99 -0.06 9.17 16 10 O -0.55 -10.39 11.93 5.56 0.07 -10.33 16 11 N -0.60 -10.59 2.97 -172.80 -0.51 -11.11 16 12 C 0.11 2.04 6.43 -3.71 -0.02 2.01 16 13 C -0.12 -2.53 5.30 -26.61 -0.14 -2.67 16 14 C 0.05 1.14 1.97 -91.73 -0.18 0.96 16 15 C -0.51 -13.64 8.50 -34.44 -0.29 -13.93 16 16 H 0.05 1.45 7.75 -52.49 -0.41 1.05 16 17 C 0.06 1.66 5.33 -17.82 -0.09 1.56 16 18 N -0.89 -24.45 11.67 55.43 0.65 -23.81 16 19 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.12 -2.63 5.20 -26.63 -0.14 -2.77 16 24 C 0.11 1.89 6.34 -3.74 -0.02 1.86 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.51 6.49 -51.93 -0.34 0.18 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 1.40 6.67 -51.93 -0.35 1.06 16 29 H 0.07 1.05 4.49 -51.93 -0.23 0.82 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.53 7.05 -51.93 -0.37 0.17 16 32 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 33 H 0.07 0.60 5.59 -51.93 -0.29 0.31 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.98 8.05 -51.93 -0.42 0.57 16 36 H 0.10 1.25 5.84 -51.93 -0.30 0.95 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.08 1.42 7.01 -51.93 -0.36 1.06 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 2.30 6.43 -51.93 -0.33 1.96 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.07 1.07 6.12 -51.93 -0.32 0.75 16 LS Contribution 341.82 15.07 5.15 5.15 Total: -1.00 -27.98 341.82 -8.81 -36.78 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.90 Total: 2.26 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -1.24 Total: -14.77 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.13 Total: -34.91 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.07 Total: -10.33 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.98 -8.81 -36.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336079647.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.253 kcal (2) G-P(sol) polarization free energy of solvation -27.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds