Wall clock time and date at job start Tue Mar 31 2020 01:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 5 5 C 1.52998 * 115.55101 * 325.71972 * 4 2 1 6 6 C 1.53002 * 117.49831 * 111.38996 * 4 2 1 7 7 C 1.52999 * 59.99973 * 107.48494 * 6 4 2 8 8 H 1.08998 * 117.50011 * 252.50757 * 7 6 4 9 9 C 1.50704 * 117.49765 * 107.48802 * 7 6 4 10 10 O 1.21280 * 120.00106 * 291.37920 * 9 7 6 11 11 N 1.34769 * 119.99837 * 111.37702 * 9 7 6 12 12 C 1.46931 * 120.63368 * 359.72231 * 11 9 7 13 13 C 1.53625 * 108.54037 * 126.36712 * 12 11 9 14 14 C 1.53043 * 109.24448 * 54.86109 * 13 12 11 15 15 C 1.50700 * 109.44910 * 178.49513 * 14 13 12 16 16 H 1.08001 * 119.99780 * 120.05781 * 15 14 13 17 17 C 1.37876 * 119.99720 * 300.05670 * 15 14 13 18 18 N 1.31514 * 120.00092 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99780 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46873 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46896 * 120.00038 * 19 17 15 22 22 H 1.48495 * 109.47321 * 240.00193 * 19 17 15 23 23 C 1.53042 * 109.53621 * 298.50523 * 14 13 12 24 24 C 1.46935 * 120.63086 * 180.02562 * 11 9 7 25 25 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 26 26 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 27 27 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47160 * 239.99666 * 2 1 3 29 29 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 30 30 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 31 31 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47081 * 34.41569 * 5 4 2 33 33 H 1.08994 * 109.47276 * 154.41796 * 5 4 2 34 34 H 1.09005 * 109.46657 * 274.41858 * 5 4 2 35 35 H 1.08995 * 117.50025 * 214.97721 * 6 4 2 36 36 H 1.09002 * 117.49792 * 0.02562 * 6 4 2 37 37 H 1.09003 * 109.58489 * 246.19935 * 12 11 9 38 38 H 1.08992 * 109.58147 * 6.62545 * 12 11 9 39 39 H 1.08994 * 109.63632 * 294.86450 * 13 12 11 40 40 H 1.09007 * 109.45477 * 174.73835 * 13 12 11 41 41 H 1.08996 * 109.45918 * 58.52242 * 14 13 12 42 42 H 0.96997 * 119.99643 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.49948 * 301.42212 * 23 14 13 44 44 H 1.08996 * 109.52627 * 181.32978 * 23 14 13 45 45 H 1.09002 * 109.58120 * 353.37526 * 24 11 9 46 46 H 1.09001 * 109.58556 * 113.79669 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.1844 -0.5491 2.5061 6 6 2.7420 -2.0662 1.0515 7 6 3.5549 -0.8280 1.4345 8 1 4.1883 -0.3843 0.6664 9 6 4.0908 -0.7552 2.8412 10 8 3.3283 -0.6169 3.7742 11 7 5.4172 -0.8437 3.0623 12 6 6.3529 -1.0174 1.9429 13 6 7.4209 0.0839 2.0235 14 6 8.0799 0.0475 3.4043 15 6 9.1540 1.1021 3.4756 16 1 9.0918 1.8870 4.2149 17 6 10.2160 1.0649 2.5972 18 7 10.2914 0.1094 1.6967 19 14 11.5478 2.3718 2.6861 20 1 11.2320 3.3268 3.7785 21 1 12.8574 1.7262 2.9568 22 1 11.6130 3.1009 1.3941 23 6 7.0268 0.3187 4.4812 24 6 5.9547 -0.7750 4.4281 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1301 1.4424 0.0005 32 1 0.1331 -0.4898 2.2246 33 1 1.3357 -1.4016 3.1682 34 1 1.4750 0.3668 3.0207 35 1 2.5948 -2.8282 1.8168 36 1 2.8410 -2.4370 0.0312 37 1 6.8275 -1.9963 2.0119 38 1 5.8130 -0.9365 0.9996 39 1 6.9558 1.0573 1.8679 40 1 8.1758 -0.0855 1.2556 41 1 8.5234 -0.9344 3.5692 42 1 11.0384 0.0835 1.0785 43 1 6.5652 1.2898 4.3024 44 1 7.5006 0.3161 5.4628 45 1 5.1519 -0.5340 5.1249 46 1 6.3976 -1.7345 4.6952 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336079648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:11 Heat of formation + Delta-G solvation = -44.605277 kcal Electronic energy + Delta-G solvation = -22949.957963 eV Core-core repulsion = 19838.927007 eV Total energy + Delta-G solvation = -3111.030956 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55579 -39.50408 -37.99137 -35.32706 -34.32521 -33.01936 -31.70400 -29.62397 -28.14595 -27.66525 -25.83184 -24.29764 -23.55558 -23.37008 -21.31006 -19.89807 -19.08056 -18.65250 -18.00922 -16.77733 -16.49819 -16.44666 -15.85630 -15.43019 -14.96343 -14.77671 -14.71042 -14.38586 -14.23658 -13.94824 -13.71791 -13.59090 -13.28411 -13.24753 -13.22157 -13.05223 -12.82524 -12.45372 -12.33664 -12.16102 -12.06161 -11.99847 -11.95194 -11.48369 -11.42433 -11.02348 -10.99527 -10.92419 -10.61567 -10.42775 -10.34264 -9.50938 -8.08894 -6.22242 1.39407 1.42682 1.52711 1.55639 2.09108 2.43319 2.81791 3.17539 3.47637 3.69954 3.80686 4.00106 4.02398 4.22383 4.25412 4.34162 4.37720 4.45523 4.49179 4.55951 4.60170 4.71497 4.82763 4.84735 4.86872 4.89743 4.97030 4.99449 5.05406 5.07440 5.11302 5.16956 5.21115 5.24736 5.27084 5.42020 5.45691 5.48656 5.56274 5.64089 5.67634 5.97303 6.12206 6.38249 6.55454 6.87059 7.24767 7.45580 8.94677 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025701 B = 0.004104 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.176124 B = 6820.530244 C = 7270.951088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.147 4.147 4 C -0.083 4.083 5 C -0.099 4.099 6 C -0.129 4.129 7 C -0.200 4.200 8 H 0.130 0.870 9 C 0.536 3.464 10 O -0.578 6.578 11 N -0.603 5.603 12 C 0.116 3.884 13 C -0.114 4.114 14 C 0.046 3.954 15 C -0.536 4.536 16 H 0.045 0.955 17 C 0.019 3.981 18 N -0.911 5.911 19 Si 0.949 3.051 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.279 1.279 23 C -0.113 4.113 24 C 0.118 3.882 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.091 0.909 36 H 0.129 0.871 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.026 0.974 40 H 0.080 0.920 41 H 0.003 0.997 42 H 0.262 0.738 43 H 0.039 0.961 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.672 -3.464 -5.982 18.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.204 4.204 4 C -0.084 4.084 5 C -0.156 4.156 6 C -0.167 4.167 7 C -0.220 4.220 8 H 0.148 0.852 9 C 0.326 3.674 10 O -0.459 6.459 11 N -0.334 5.334 12 C -0.006 4.006 13 C -0.153 4.153 14 C 0.027 3.973 15 C -0.574 4.574 16 H 0.064 0.936 17 C -0.180 4.180 18 N -0.550 5.550 19 Si 0.775 3.225 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.151 4.151 24 C -0.005 4.005 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.147 0.853 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.045 0.955 40 H 0.098 0.902 41 H 0.021 0.979 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.931 -3.450 -5.620 18.170 hybrid contribution 1.530 0.826 0.363 1.776 sum -15.401 -2.625 -5.257 16.484 Atomic orbital electron populations 1.21876 0.93636 1.02395 1.02159 1.20719 0.96788 0.95304 0.94602 1.21830 1.00610 0.96182 1.01808 1.21681 0.89718 0.99089 0.97875 1.21331 0.98656 1.01337 0.94283 1.23281 0.99716 0.89841 1.03816 1.22348 0.96763 1.08434 0.94490 0.85184 1.20211 0.81322 0.75071 0.90810 1.90618 1.56947 1.52180 1.46202 1.48252 1.06070 1.70801 1.08317 1.21988 0.90617 0.99138 0.88859 1.21861 0.96427 0.95511 1.01462 1.18603 0.91793 0.95262 0.91607 1.21568 1.07348 1.11950 1.16509 0.93620 1.25621 0.99746 0.97534 0.95105 1.69950 1.31635 1.33542 1.19918 0.85651 0.79384 0.79582 0.77895 1.19791 1.20588 1.20496 1.21854 0.96129 0.97051 1.00055 1.21563 0.96411 0.99083 0.83419 0.92553 0.91496 0.91828 0.89587 0.91152 0.93739 0.93711 0.90674 0.93721 0.94141 0.89077 0.85277 0.91721 0.88368 0.95545 0.90195 0.97853 0.92880 0.94238 0.91911 0.90281 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.20 71.98 0.59 -1.48 16 2 C -0.06 -0.98 2.99 -10.79 -0.03 -1.01 16 3 C -0.15 -2.86 9.03 71.98 0.65 -2.21 16 4 C -0.08 -1.85 1.91 -52.18 -0.10 -1.95 16 5 C -0.10 -2.52 7.73 71.98 0.56 -1.96 16 6 C -0.13 -2.66 9.52 30.59 0.29 -2.37 16 7 C -0.20 -5.25 4.32 -11.54 -0.05 -5.30 16 8 H 0.13 3.22 6.04 -2.39 -0.01 3.21 16 9 C 0.54 18.45 7.46 87.66 0.65 19.10 16 10 O -0.58 -22.59 12.52 -3.03 -0.04 -22.62 16 11 N -0.60 -21.68 2.97 -817.94 -2.43 -24.11 16 12 C 0.12 4.09 6.37 86.51 0.55 4.64 16 13 C -0.11 -5.08 5.17 30.82 0.16 -4.92 16 14 C 0.05 2.23 2.06 -11.51 -0.02 2.21 16 15 C -0.54 -29.17 8.56 25.60 0.22 -28.95 16 16 H 0.05 2.50 7.74 -2.91 -0.02 2.48 16 17 C 0.02 1.02 5.30 84.65 0.45 1.47 16 18 N -0.91 -50.24 11.30 21.45 0.24 -49.99 16 19 Si 0.95 42.92 29.54 68.60 2.03 44.95 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 C -0.11 -4.76 5.30 30.69 0.16 -4.59 16 24 C 0.12 4.39 6.43 86.38 0.56 4.94 16 25 H 0.06 0.88 6.45 -2.39 -0.02 0.86 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 1.28 7.90 -2.39 -0.02 1.26 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 0.97 7.29 -2.39 -0.02 0.96 16 32 H 0.07 1.52 5.59 -2.39 -0.01 1.51 16 33 H 0.04 1.27 7.01 -2.39 -0.02 1.26 16 34 H 0.04 1.22 7.27 -2.38 -0.02 1.21 16 35 H 0.09 2.01 8.05 -2.39 -0.02 1.99 16 36 H 0.13 1.94 8.05 -2.39 -0.02 1.92 16 37 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.10 2.88 5.51 -2.39 -0.01 2.87 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 3.97 6.03 -2.38 -0.01 3.96 16 41 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 43 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.08 2.94 7.01 -2.39 -0.02 2.92 16 46 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -61.23 347.67 5.38 -55.86 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.94 Total: 18.30 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 4.63 Total: -22.38 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -2.18 Total: -74.10 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.04 Total: -22.62 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -61.23 5.38 -55.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336079648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.251 kcal (2) G-P(sol) polarization free energy of solvation -61.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds