Wall clock time and date at job start Tue Mar 31 2020 01:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47174 * 2 1 4 4 C 1.53003 * 109.47017 * 119.99314 * 2 1 3 5 5 C 1.52998 * 115.54809 * 34.33266 * 4 2 1 6 6 C 1.52999 * 117.50339 * 248.62363 * 4 2 1 7 7 C 1.52999 * 117.49872 * 179.97438 * 4 2 1 8 8 H 1.08998 * 117.50207 * 359.97438 * 7 4 2 9 9 C 1.50703 * 117.49785 * 214.98085 * 7 4 2 10 10 O 1.21284 * 120.00028 * 0.02562 * 9 7 4 11 11 N 1.34771 * 119.99788 * 180.02562 * 9 7 4 12 12 C 1.46932 * 120.63056 * 180.02562 * 11 9 7 13 13 C 1.53202 * 108.77270 * 233.63043 * 12 11 9 14 14 C 1.53038 * 109.31185 * 305.36251 * 13 12 11 15 15 C 1.50701 * 109.46023 * 181.38834 * 14 13 12 16 16 H 1.08000 * 119.99670 * 335.18316 * 15 14 13 17 17 C 1.37869 * 120.00052 * 155.18405 * 15 14 13 18 18 N 1.31513 * 120.00394 * 355.16498 * 17 15 14 19 19 Si 1.86802 * 120.00004 * 175.16663 * 17 15 14 20 20 H 1.48499 * 109.47354 * 59.99771 * 19 17 15 21 21 H 1.48500 * 109.47005 * 300.00202 * 19 17 15 22 22 H 1.48495 * 109.47326 * 179.97438 * 19 17 15 23 23 C 1.53036 * 109.53032 * 61.37281 * 14 13 12 24 24 C 1.46926 * 120.63298 * 0.02562 * 11 9 7 25 25 H 1.08997 * 109.47557 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47823 * 300.00641 * 1 2 3 27 27 H 1.09006 * 109.47447 * 60.00276 * 1 2 3 28 28 H 1.08993 * 109.47511 * 239.99660 * 2 1 3 29 29 H 1.08999 * 109.46744 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46464 * 299.99455 * 3 2 1 31 31 H 1.08993 * 109.47179 * 59.99456 * 3 2 1 32 32 H 1.09005 * 109.47501 * 205.66781 * 5 4 2 33 33 H 1.09004 * 109.47182 * 325.66686 * 5 4 2 34 34 H 1.09003 * 109.47454 * 85.66833 * 5 4 2 35 35 H 1.08995 * 117.49928 * 145.01752 * 6 4 2 36 36 H 1.09003 * 117.49563 * 359.97438 * 6 4 2 37 37 H 1.08995 * 109.58856 * 113.84621 * 12 11 9 38 38 H 1.08997 * 109.58545 * 353.41287 * 12 11 9 39 39 H 1.08995 * 109.49231 * 185.41264 * 13 12 11 40 40 H 1.08994 * 109.52224 * 65.33082 * 13 12 11 41 41 H 1.09006 * 109.46055 * 301.36326 * 14 13 12 42 42 H 0.97006 * 119.99910 * 5.18650 * 18 17 15 43 43 H 1.09007 * 109.49661 * 58.57457 * 23 14 13 44 44 H 1.09000 * 109.50408 * 178.67347 * 23 14 13 45 45 H 1.09001 * 109.58996 * 246.15816 * 24 11 9 46 46 H 1.08994 * 109.58828 * 6.44566 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.1851 -1.8963 1.7280 6 6 2.7418 0.1228 2.3152 7 6 3.5549 -0.8285 1.4341 8 1 4.1883 -0.3858 0.6655 9 6 4.0906 -2.0831 2.0746 10 8 3.3280 -2.9602 2.4212 11 7 5.4170 -2.2303 2.2621 12 6 5.9545 -3.4480 2.8846 13 6 6.8387 -3.0468 4.0697 14 6 7.9073 -2.0605 3.5928 15 6 8.8001 -1.6899 4.7488 16 1 8.4313 -1.7637 5.7612 17 6 10.0877 -1.2566 4.5141 18 7 10.5688 -1.2568 3.2901 19 14 11.1491 -0.6691 5.9346 20 1 11.3147 -1.7701 6.9172 21 1 10.4955 0.4894 6.5948 22 1 12.4811 -0.2601 5.4212 23 6 7.2328 -0.8007 3.0452 24 6 6.3532 -1.1764 1.8480 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3635 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.3350 -2.0427 2.7978 33 1 0.1338 -1.6836 1.5342 34 1 1.4776 -2.8000 1.1932 35 1 2.5945 -0.1590 3.3578 36 1 2.8406 1.1917 2.1262 37 1 6.5484 -3.9994 2.1558 38 1 5.1327 -4.0716 3.2365 39 1 7.3200 -3.9340 4.4810 40 1 6.2260 -2.5758 4.8383 41 1 8.5040 -2.5236 2.8069 42 1 9.9950 -1.4899 2.5435 43 1 6.6158 -0.3508 3.8232 44 1 7.9946 -0.0888 2.7274 45 1 6.9796 -1.5429 1.0347 46 1 5.7947 -0.3022 1.5136 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336079649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:17 Heat of formation + Delta-G solvation = -48.059738 kcal Electronic energy + Delta-G solvation = -22885.703577 eV Core-core repulsion = 19774.522825 eV Total energy + Delta-G solvation = -3111.180752 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.68314 -39.71615 -38.19516 -35.57659 -34.09761 -32.94408 -31.92938 -30.21371 -27.97598 -27.07976 -25.57223 -24.49658 -23.95873 -23.49449 -21.61469 -19.90631 -19.08447 -18.96732 -18.23546 -16.79454 -16.58231 -16.14739 -15.67665 -15.64381 -15.39757 -15.12327 -14.57666 -14.52307 -14.35480 -14.14771 -13.87950 -13.58864 -13.35016 -13.31902 -13.03033 -12.67948 -12.60668 -12.56037 -12.46941 -12.26372 -12.18184 -11.96309 -11.93884 -11.56755 -11.54051 -11.16097 -10.99849 -10.75666 -10.56072 -10.43452 -10.40133 -9.60674 -8.57250 -6.29086 1.47324 1.53990 1.60008 1.79761 1.96423 2.57628 2.78290 3.20628 3.40310 3.66372 3.80085 3.90866 3.95885 4.07191 4.12549 4.22176 4.26527 4.29659 4.41453 4.42756 4.55226 4.66900 4.73068 4.73903 4.76028 4.83737 4.89628 4.96233 4.96351 4.99916 5.05819 5.08343 5.10343 5.11878 5.21005 5.24605 5.39895 5.45703 5.50626 5.54846 5.60067 5.74845 6.12859 6.24132 6.44721 6.69374 7.15808 7.49129 8.81738 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.030056 B = 0.003866 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.380457 B = 7240.266360 C = 7702.809145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.058 4.058 3 C -0.151 4.151 4 C -0.080 4.080 5 C -0.102 4.102 6 C -0.141 4.141 7 C -0.197 4.197 8 H 0.139 0.861 9 C 0.536 3.464 10 O -0.576 6.576 11 N -0.603 5.603 12 C 0.117 3.883 13 C -0.106 4.106 14 C 0.026 3.974 15 C -0.608 4.608 16 H 0.037 0.963 17 C -0.025 4.025 18 N -0.936 5.936 19 Si 1.108 2.892 20 H -0.276 1.276 21 H -0.273 1.273 22 H -0.284 1.284 23 C -0.110 4.110 24 C 0.114 3.886 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.132 0.868 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.040 0.960 41 H 0.010 0.990 42 H 0.261 0.739 43 H 0.043 0.957 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.718 5.339 -7.644 20.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 C -0.208 4.208 4 C -0.080 4.080 5 C -0.159 4.159 6 C -0.178 4.178 7 C -0.217 4.217 8 H 0.157 0.843 9 C 0.326 3.674 10 O -0.457 6.457 11 N -0.335 5.335 12 C -0.005 4.005 13 C -0.145 4.145 14 C 0.007 3.993 15 C -0.646 4.646 16 H 0.055 0.945 17 C -0.224 4.224 18 N -0.573 5.573 19 Si 0.930 3.070 20 H -0.202 1.202 21 H -0.198 1.198 22 H -0.209 1.209 23 C -0.148 4.148 24 C -0.009 4.009 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.150 0.850 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.587 5.396 -7.077 18.824 hybrid contribution -0.841 -0.943 -0.113 1.268 sum -17.428 4.453 -7.189 19.372 Atomic orbital electron populations 1.21883 0.93803 1.02090 1.02390 1.20639 0.96675 0.95863 0.94421 1.21992 1.01142 0.94983 1.02713 1.21711 0.89616 0.98611 0.98075 1.21365 0.98814 0.95560 1.00142 1.23372 1.00522 0.98197 0.95709 1.22402 0.96843 0.97093 1.05396 0.84347 1.20288 0.81158 0.88113 0.77830 1.90631 1.56813 1.44699 1.53545 1.48174 1.06182 1.19336 1.59772 1.21558 0.97230 0.86733 0.95012 1.21762 0.96694 0.99483 0.96511 1.18825 0.92712 0.92415 0.95357 1.22292 1.00733 1.48043 0.93527 0.94457 1.27047 0.98130 0.94234 1.02981 1.70919 1.38746 1.47793 0.99858 0.83038 0.74681 0.76938 0.72297 1.20201 1.19806 1.20942 1.21871 0.97289 0.99323 0.96358 1.21901 0.91562 0.90674 0.96715 0.92371 0.92272 0.91405 0.90904 0.92570 0.91361 0.91681 0.94181 0.90570 0.93600 0.90034 0.84974 0.91572 0.90123 0.92340 0.94083 0.97190 0.92864 0.93794 0.93419 0.91572 0.87563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.20 71.98 0.59 -1.35 16 2 C -0.06 -0.92 3.15 -10.79 -0.03 -0.95 16 3 C -0.15 -1.97 7.79 71.98 0.56 -1.41 16 4 C -0.08 -1.71 2.46 -52.18 -0.13 -1.84 16 5 C -0.10 -2.52 7.73 71.98 0.56 -1.97 16 6 C -0.14 -3.05 8.92 30.61 0.27 -2.78 16 7 C -0.20 -4.88 4.33 -11.52 -0.05 -4.93 16 8 H 0.14 2.92 6.28 -2.39 -0.02 2.90 16 9 C 0.54 17.83 7.46 87.66 0.65 18.49 16 10 O -0.58 -22.08 12.52 -3.04 -0.04 -22.12 16 11 N -0.60 -20.88 2.97 -818.81 -2.43 -23.31 16 12 C 0.12 4.34 6.43 86.36 0.56 4.89 16 13 C -0.11 -4.51 5.34 30.67 0.16 -4.34 16 14 C 0.03 1.24 1.79 -11.51 -0.02 1.22 16 15 C -0.61 -33.44 8.31 25.60 0.21 -33.22 16 16 H 0.04 2.08 7.81 -2.91 -0.02 2.05 16 17 C -0.03 -1.41 5.45 84.65 0.46 -0.94 16 18 N -0.94 -55.03 13.63 21.44 0.29 -54.74 16 19 Si 1.11 49.49 29.91 68.60 2.05 51.54 16 20 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 C -0.11 -4.58 5.34 30.68 0.16 -4.42 16 24 C 0.11 3.73 6.30 86.38 0.54 4.28 16 25 H 0.06 0.82 6.44 -2.39 -0.02 0.81 16 26 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 0.75 7.07 -2.39 -0.02 0.74 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.80 6.98 -2.39 -0.02 0.79 16 32 H 0.04 1.16 7.01 -2.38 -0.02 1.14 16 33 H 0.08 1.49 5.58 -2.38 -0.01 1.48 16 34 H 0.04 1.31 7.26 -2.39 -0.02 1.29 16 35 H 0.08 2.04 8.05 -2.39 -0.02 2.02 16 36 H 0.13 2.21 5.85 -2.39 -0.01 2.19 16 37 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.08 2.98 7.00 -2.39 -0.02 2.97 16 39 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.01 0.52 6.67 -2.38 -0.02 0.51 16 42 H 0.26 15.27 6.66 -92.70 -0.62 14.66 16 43 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.11 2.78 5.67 -2.39 -0.01 2.77 16 Total: -1.00 -64.74 345.13 5.47 -59.27 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 1.10 Total: 18.65 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 4.50 Total: -29.28 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -2.14 Total: -78.05 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.04 Total: -22.12 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 2.05 Total: 51.54 kcal Total: -64.74 5.47 -59.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336079649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.212 kcal (2) G-P(sol) polarization free energy of solvation -64.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds