Wall clock time and date at job start Tue Mar 31 2020 00:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47345 * 2 1 4 4 C 1.50708 * 109.47023 * 240.00276 * 2 1 3 5 5 O 1.21287 * 119.99650 * 358.24281 * 4 2 1 6 6 N 1.34773 * 120.00011 * 178.24065 * 4 2 1 7 7 C 1.46926 * 120.63273 * 4.96242 * 6 4 2 8 8 C 1.52759 * 109.01050 * 233.58585 * 7 6 4 9 9 C 1.53040 * 109.38189 * 305.58740 * 8 7 6 10 10 C 1.50705 * 109.45051 * 181.25075 * 9 8 7 11 11 H 1.07990 * 120.00274 * 245.04517 * 10 9 8 12 12 C 1.37881 * 119.99492 * 65.04321 * 10 9 8 13 13 N 1.31512 * 119.99958 * 6.28200 * 12 10 9 14 14 Si 1.86796 * 119.99774 * 186.27698 * 12 10 9 15 15 H 1.48501 * 109.47010 * 94.99422 * 14 12 10 16 16 H 1.48494 * 109.47291 * 214.99463 * 14 12 10 17 17 H 1.48501 * 109.47225 * 334.99459 * 14 12 10 18 18 C 1.53039 * 109.53938 * 61.24033 * 9 8 7 19 19 C 1.46928 * 120.62784 * 185.24692 * 6 4 2 20 20 C 1.52997 * 109.47457 * 120.00411 * 2 1 3 21 21 C 1.53776 * 113.61342 * 36.73664 * 20 2 1 22 22 C 1.53958 * 87.02049 * 220.04748 * 21 20 2 23 23 C 1.53775 * 113.61445 * 299.12790 * 20 2 1 24 24 H 1.08993 * 109.47694 * 53.62824 * 1 2 3 25 25 H 1.08999 * 109.46842 * 293.62613 * 1 2 3 26 26 H 1.09001 * 109.47166 * 173.63059 * 1 2 3 27 27 H 1.09004 * 109.46484 * 71.08889 * 3 2 1 28 28 H 1.08993 * 109.47501 * 191.09088 * 3 2 1 29 29 H 1.09004 * 109.46981 * 311.09581 * 3 2 1 30 30 H 1.09002 * 109.58529 * 353.41640 * 7 6 4 31 31 H 1.08999 * 109.58582 * 113.84210 * 7 6 4 32 32 H 1.08996 * 109.56740 * 185.55185 * 8 7 6 33 33 H 1.08998 * 109.38644 * 65.51406 * 8 7 6 34 34 H 1.08994 * 109.46178 * 301.21917 * 9 8 7 35 35 H 0.97002 * 119.99553 * 180.02562 * 13 12 10 36 36 H 1.08996 * 109.49863 * 178.68183 * 18 9 8 37 37 H 1.09004 * 109.52378 * 58.60143 * 18 9 8 38 38 H 1.09005 * 109.57981 * 246.15217 * 19 6 4 39 39 H 1.08998 * 109.58866 * 6.43324 * 19 6 4 40 40 H 1.09000 * 112.85078 * 167.93545 * 20 2 1 41 41 H 1.08999 * 113.61987 * 334.56966 * 21 20 2 42 42 H 1.09006 * 113.61476 * 105.47565 * 21 20 2 43 43 H 1.08999 * 113.54139 * 270.81498 * 22 21 20 44 44 H 1.08995 * 113.66587 * 139.93380 * 22 21 20 45 45 H 1.08998 * 113.61750 * 254.53389 * 23 20 2 46 46 H 1.09000 * 113.61749 * 25.34919 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 1.2445 -1.1991 -2.0127 6 7 3.3568 -0.8026 -1.4619 7 6 4.3256 -0.3121 -0.4722 8 6 5.2830 0.6635 -1.1541 9 6 5.9161 -0.0137 -2.3718 10 6 6.8841 0.9370 -3.0279 11 1 6.6900 1.3022 -4.0255 12 6 8.0175 1.3405 -2.3544 13 7 8.3183 0.8030 -1.1925 14 14 9.1258 2.6506 -3.0925 15 1 8.7554 3.9794 -2.5427 16 1 10.5401 2.3512 -2.7531 17 1 8.9629 2.6627 -4.5685 18 6 4.8220 -0.3971 -3.3707 19 6 3.8593 -1.3898 -2.7115 20 6 2.0401 -0.7213 1.2491 21 6 1.1808 -1.9298 1.6566 22 6 1.3834 -1.4802 3.1151 23 6 1.5988 -0.0602 2.5655 24 1 -0.3634 0.6094 -0.8274 25 1 -0.3633 0.4119 0.9415 26 1 -0.3633 -1.0213 -0.1140 27 1 1.8471 1.8960 0.9723 28 1 3.1119 1.4489 -0.1977 29 1 1.5243 2.0103 -0.7745 30 1 3.7981 0.1987 0.3334 31 1 4.8908 -1.1515 -0.0671 32 1 6.0649 0.9573 -0.4538 33 1 4.7313 1.5471 -1.4751 34 1 6.4475 -0.9104 -2.0533 35 1 9.1155 1.0872 -0.7185 36 1 5.2756 -0.8582 -4.2480 37 1 4.2740 0.4959 -3.6714 38 1 4.3858 -2.3189 -2.4927 39 1 3.0241 -1.5923 -3.3819 40 1 3.1072 -0.9389 1.2061 41 1 0.1465 -1.8639 1.3191 42 1 1.6417 -2.8906 1.4269 43 1 2.2709 -1.9066 3.5828 44 1 0.4900 -1.5791 3.7315 45 1 2.3965 0.4863 3.0685 46 1 0.6798 0.5191 2.4767 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336202851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:02 Heat of formation + Delta-G solvation = -19.691976 kcal Electronic energy + Delta-G solvation = -23739.260522 eV Core-core repulsion = 20629.309888 eV Total energy + Delta-G solvation = -3109.950634 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.89031 -38.49460 -36.82079 -34.02622 -33.34144 -31.13311 -30.21843 -27.38415 -26.44456 -25.68325 -25.27177 -23.59282 -22.43153 -21.62146 -19.79986 -18.74638 -18.14908 -16.78423 -16.25303 -15.77578 -15.25015 -15.18102 -14.53722 -14.52797 -13.67557 -13.37014 -13.18233 -12.99261 -12.77819 -12.67050 -12.57049 -12.19972 -12.06903 -11.68222 -11.61438 -11.50351 -11.42346 -11.18099 -10.94631 -10.93035 -10.65362 -10.44281 -10.36402 -10.19863 -10.16515 -10.02304 -9.64335 -9.20447 -9.11153 -8.82851 -8.38474 -7.97557 -6.06801 -4.09656 3.04241 3.26831 3.34685 3.38059 3.51997 4.40176 4.48672 4.55760 4.65427 4.78804 4.96632 5.12864 5.24163 5.26224 5.30795 5.57725 5.62307 5.66998 5.70193 5.76203 5.82131 5.84857 5.91753 5.92546 5.94583 6.03836 6.05094 6.10039 6.16210 6.23023 6.27186 6.30452 6.34288 6.47269 6.54901 6.64584 6.88982 7.03098 7.12146 7.19932 7.63689 7.88096 7.94894 7.98451 8.38235 8.63055 8.94323 9.54828 11.01427 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024126 B = 0.004930 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.277480 B = 5678.320671 C = 6160.776726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.069 4.069 3 C -0.160 4.160 4 C 0.523 3.477 5 O -0.560 6.560 6 N -0.597 5.597 7 C 0.084 3.916 8 C -0.120 4.120 9 C 0.048 3.952 10 C -0.513 4.513 11 H 0.054 0.946 12 C 0.063 3.937 13 N -0.890 5.890 14 Si 0.887 3.113 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.123 4.123 19 C 0.111 3.889 20 C -0.114 4.114 21 C -0.142 4.142 22 C -0.141 4.141 23 C -0.134 4.134 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.033 0.967 35 H 0.260 0.740 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.267 -1.936 8.152 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.072 4.072 3 C -0.217 4.217 4 C 0.311 3.689 5 O -0.439 6.439 6 N -0.328 5.328 7 C -0.038 4.038 8 C -0.158 4.158 9 C 0.030 3.970 10 C -0.551 4.551 11 H 0.073 0.927 12 C -0.138 4.138 13 N -0.529 5.529 14 Si 0.715 3.285 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.161 4.161 19 C -0.011 4.011 20 C -0.132 4.132 21 C -0.179 4.179 22 C -0.179 4.179 23 C -0.171 4.171 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.518 -2.196 7.870 14.949 hybrid contribution 0.888 0.786 -0.375 1.244 sum -11.630 -1.410 7.496 13.908 Atomic orbital electron populations 1.21762 0.92651 1.02687 1.01310 1.20613 0.97211 0.96250 0.93139 1.22263 1.03528 0.93470 1.02458 1.20459 0.81999 0.79444 0.86995 1.90611 1.55242 1.49053 1.49012 1.48123 1.05227 1.59806 1.19684 1.22448 0.91207 0.98720 0.91414 1.21902 0.96887 0.96404 1.00655 1.18631 0.91259 0.96354 0.90794 1.21191 1.05537 1.27120 1.01300 0.92733 1.24948 0.97309 0.96398 0.95131 1.69927 1.26247 1.41877 1.14851 0.86653 0.79970 0.82264 0.79578 1.20751 1.21293 1.19929 1.22002 0.97132 0.97550 0.99390 1.21689 0.97758 0.96294 0.85378 1.22996 1.01006 0.96640 0.92581 1.23143 1.00966 0.97841 0.95995 1.22810 1.01654 0.96959 0.96431 1.22967 1.01684 0.96477 0.95970 0.92406 0.92207 0.91614 0.91570 0.89720 0.92307 0.89080 0.92133 0.89318 0.93940 0.94915 0.93028 0.92127 0.93097 0.92366 0.90512 0.87508 0.89290 0.91778 0.90302 0.91689 0.91300 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 6.71 37.16 0.25 -1.33 16 2 C -0.07 -0.94 0.43 -155.66 -0.07 -1.01 16 3 C -0.16 -2.10 8.03 37.16 0.30 -1.80 16 4 C 0.52 9.17 6.48 -10.98 -0.07 9.10 16 5 O -0.56 -11.40 15.31 5.55 0.09 -11.31 16 6 N -0.60 -10.68 2.97 -173.02 -0.51 -11.20 16 7 C 0.08 1.45 3.91 -3.93 -0.02 1.44 16 8 C -0.12 -2.54 4.86 -26.83 -0.13 -2.67 16 9 C 0.05 1.13 1.94 -91.73 -0.18 0.95 16 10 C -0.51 -13.56 8.49 -34.44 -0.29 -13.85 16 11 H 0.05 1.45 7.75 -52.49 -0.41 1.04 16 12 C 0.06 1.69 5.24 -17.82 -0.09 1.60 16 13 N -0.89 -24.33 11.97 55.43 0.66 -23.67 16 14 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 18 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 19 C 0.11 2.07 6.42 -3.71 -0.02 2.04 16 20 C -0.11 -1.37 2.41 -89.81 -0.22 -1.59 16 21 C -0.14 -1.59 7.33 -25.83 -0.19 -1.78 16 22 C -0.14 -1.33 8.09 -25.82 -0.21 -1.54 16 23 C -0.13 -1.31 6.27 -25.92 -0.16 -1.47 16 24 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 25 H 0.06 0.60 6.30 -51.93 -0.33 0.27 16 26 H 0.06 0.86 6.26 -51.93 -0.33 0.54 16 27 H 0.07 0.72 7.06 -51.93 -0.37 0.35 16 28 H 0.08 1.24 3.87 -51.93 -0.20 1.04 16 29 H 0.06 0.78 8.05 -51.93 -0.42 0.36 16 30 H 0.09 1.37 2.88 -51.93 -0.15 1.22 16 31 H 0.06 1.06 8.13 -51.93 -0.42 0.64 16 32 H 0.09 2.08 6.71 -51.93 -0.35 1.73 16 33 H 0.04 0.90 7.40 -51.93 -0.38 0.52 16 34 H 0.03 0.84 8.12 -51.93 -0.42 0.42 16 35 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.08 1.44 7.04 -51.93 -0.37 1.07 16 40 H 0.11 1.39 5.13 -51.93 -0.27 1.12 16 41 H 0.09 0.98 5.59 -51.93 -0.29 0.69 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.76 6.36 -51.93 -0.33 0.43 16 LS Contribution 333.08 15.07 5.02 5.02 Total: -1.00 -28.56 333.08 -8.55 -37.11 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.54 Total: 2.92 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -1.24 Total: -14.57 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.15 Total: -34.86 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.56 -8.55 -37.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336202851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.419 kcal (2) G-P(sol) polarization free energy of solvation -28.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds