Wall clock time and date at job start Tue Mar 31 2020 00:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47345 * 2 1 4 4 C 1.50708 * 109.47023 * 240.00276 * 2 1 3 5 5 O 1.21287 * 119.99650 * 358.24281 * 4 2 1 6 6 N 1.34773 * 120.00011 * 178.24065 * 4 2 1 7 7 C 1.46926 * 120.63273 * 4.96242 * 6 4 2 8 8 C 1.52759 * 109.01050 * 233.58585 * 7 6 4 9 9 C 1.53040 * 109.38189 * 305.58740 * 8 7 6 10 10 C 1.50705 * 109.45051 * 181.25075 * 9 8 7 11 11 H 1.07990 * 120.00274 * 245.04517 * 10 9 8 12 12 C 1.37881 * 119.99492 * 65.04321 * 10 9 8 13 13 N 1.31512 * 119.99958 * 6.28200 * 12 10 9 14 14 Si 1.86796 * 119.99774 * 186.27698 * 12 10 9 15 15 H 1.48501 * 109.47010 * 94.99422 * 14 12 10 16 16 H 1.48494 * 109.47291 * 214.99463 * 14 12 10 17 17 H 1.48501 * 109.47225 * 334.99459 * 14 12 10 18 18 C 1.53039 * 109.53938 * 61.24033 * 9 8 7 19 19 C 1.46928 * 120.62784 * 185.24692 * 6 4 2 20 20 C 1.52997 * 109.47457 * 120.00411 * 2 1 3 21 21 C 1.53776 * 113.61342 * 36.73664 * 20 2 1 22 22 C 1.53958 * 87.02049 * 220.04748 * 21 20 2 23 23 C 1.53775 * 113.61445 * 299.12790 * 20 2 1 24 24 H 1.08993 * 109.47694 * 53.62824 * 1 2 3 25 25 H 1.08999 * 109.46842 * 293.62613 * 1 2 3 26 26 H 1.09001 * 109.47166 * 173.63059 * 1 2 3 27 27 H 1.09004 * 109.46484 * 71.08889 * 3 2 1 28 28 H 1.08993 * 109.47501 * 191.09088 * 3 2 1 29 29 H 1.09004 * 109.46981 * 311.09581 * 3 2 1 30 30 H 1.09002 * 109.58529 * 353.41640 * 7 6 4 31 31 H 1.08999 * 109.58582 * 113.84210 * 7 6 4 32 32 H 1.08996 * 109.56740 * 185.55185 * 8 7 6 33 33 H 1.08998 * 109.38644 * 65.51406 * 8 7 6 34 34 H 1.08994 * 109.46178 * 301.21917 * 9 8 7 35 35 H 0.97002 * 119.99553 * 180.02562 * 13 12 10 36 36 H 1.08996 * 109.49863 * 178.68183 * 18 9 8 37 37 H 1.09004 * 109.52378 * 58.60143 * 18 9 8 38 38 H 1.09005 * 109.57981 * 246.15217 * 19 6 4 39 39 H 1.08998 * 109.58866 * 6.43324 * 19 6 4 40 40 H 1.09000 * 112.85078 * 167.93545 * 20 2 1 41 41 H 1.08999 * 113.61987 * 334.56966 * 21 20 2 42 42 H 1.09006 * 113.61476 * 105.47565 * 21 20 2 43 43 H 1.08999 * 113.54139 * 270.81498 * 22 21 20 44 44 H 1.08995 * 113.66587 * 139.93380 * 22 21 20 45 45 H 1.08998 * 113.61750 * 254.53389 * 23 20 2 46 46 H 1.09000 * 113.61749 * 25.34919 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 1.2445 -1.1991 -2.0127 6 7 3.3568 -0.8026 -1.4619 7 6 4.3256 -0.3121 -0.4722 8 6 5.2830 0.6635 -1.1541 9 6 5.9161 -0.0137 -2.3718 10 6 6.8841 0.9370 -3.0279 11 1 6.6900 1.3022 -4.0255 12 6 8.0175 1.3405 -2.3544 13 7 8.3183 0.8030 -1.1925 14 14 9.1258 2.6506 -3.0925 15 1 8.7554 3.9794 -2.5427 16 1 10.5401 2.3512 -2.7531 17 1 8.9629 2.6627 -4.5685 18 6 4.8220 -0.3971 -3.3707 19 6 3.8593 -1.3898 -2.7115 20 6 2.0401 -0.7213 1.2491 21 6 1.1808 -1.9298 1.6566 22 6 1.3834 -1.4802 3.1151 23 6 1.5988 -0.0602 2.5655 24 1 -0.3634 0.6094 -0.8274 25 1 -0.3633 0.4119 0.9415 26 1 -0.3633 -1.0213 -0.1140 27 1 1.8471 1.8960 0.9723 28 1 3.1119 1.4489 -0.1977 29 1 1.5243 2.0103 -0.7745 30 1 3.7981 0.1987 0.3334 31 1 4.8908 -1.1515 -0.0671 32 1 6.0649 0.9573 -0.4538 33 1 4.7313 1.5471 -1.4751 34 1 6.4475 -0.9104 -2.0533 35 1 9.1155 1.0872 -0.7185 36 1 5.2756 -0.8582 -4.2480 37 1 4.2740 0.4959 -3.6714 38 1 4.3858 -2.3189 -2.4927 39 1 3.0241 -1.5923 -3.3819 40 1 3.1072 -0.9389 1.2061 41 1 0.1465 -1.8639 1.3191 42 1 1.6417 -2.8906 1.4269 43 1 2.2709 -1.9066 3.5828 44 1 0.4900 -1.5791 3.7315 45 1 2.3965 0.4863 3.0685 46 1 0.6798 0.5191 2.4767 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336202851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:00 Heat of formation + Delta-G solvation = -34.001952 kcal Electronic energy + Delta-G solvation = -23739.881049 eV Core-core repulsion = 20629.309888 eV Total energy + Delta-G solvation = -3110.571161 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -42.10813 -39.66477 -38.40772 -35.44376 -34.86485 -32.90342 -31.81450 -28.40730 -28.18586 -26.69869 -26.12361 -25.20761 -23.98203 -23.00750 -21.27726 -19.80605 -19.59558 -18.39811 -17.81384 -17.12633 -16.53195 -16.41270 -16.15461 -15.89841 -15.08088 -14.81229 -14.57839 -14.47188 -14.34623 -13.83420 -13.72600 -13.42168 -13.28613 -13.19512 -13.03465 -12.79131 -12.69528 -12.49713 -12.41565 -12.20706 -12.15042 -11.98520 -11.86262 -11.49722 -11.33758 -11.21751 -11.00279 -10.93220 -10.78138 -10.44029 -10.27033 -9.53665 -8.11113 -6.20574 1.40751 1.43446 1.52226 1.65668 2.11479 2.44271 3.18516 3.38440 3.64374 3.73495 3.91644 4.02411 4.08776 4.16477 4.21214 4.27514 4.32598 4.38887 4.45581 4.54989 4.66507 4.74099 4.79033 4.84822 4.85065 4.89864 4.93905 4.97980 5.02954 5.07482 5.14403 5.16443 5.20446 5.23477 5.30776 5.35829 5.42060 5.43080 5.53770 5.66032 5.68920 5.96679 6.05126 6.37671 6.54346 6.89193 7.20862 7.46542 8.95908 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024126 B = 0.004930 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.277480 B = 5678.320671 C = 6160.776726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 C -0.158 4.158 4 C 0.517 3.483 5 O -0.590 6.590 6 N -0.600 5.600 7 C 0.098 3.902 8 C -0.108 4.108 9 C 0.046 3.954 10 C -0.535 4.535 11 H 0.046 0.954 12 C 0.022 3.978 13 N -0.913 5.913 14 Si 0.945 3.055 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.274 1.274 18 C -0.112 4.112 19 C 0.115 3.885 20 C -0.122 4.122 21 C -0.147 4.147 22 C -0.132 4.132 23 C -0.124 4.124 24 H 0.047 0.953 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.121 0.879 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.004 0.996 35 H 0.262 0.738 36 H 0.061 0.939 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.349 -1.091 9.708 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.067 4.067 3 C -0.215 4.215 4 C 0.307 3.693 5 O -0.472 6.472 6 N -0.332 5.332 7 C -0.024 4.024 8 C -0.147 4.147 9 C 0.027 3.973 10 C -0.573 4.573 11 H 0.064 0.936 12 C -0.178 4.178 13 N -0.552 5.552 14 Si 0.772 3.228 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.150 4.150 19 C -0.008 4.008 20 C -0.141 4.141 21 C -0.184 4.184 22 C -0.170 4.170 23 C -0.161 4.161 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.139 0.861 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.022 0.978 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.603 -1.350 9.431 16.607 hybrid contribution 1.230 0.483 -0.912 1.605 sum -12.373 -0.867 8.519 15.047 Atomic orbital electron populations 1.21757 0.91459 1.02210 1.02580 1.20675 0.98084 0.96174 0.91760 1.22250 1.02094 0.93116 1.04041 1.21268 0.81274 0.78843 0.87874 1.90591 1.55776 1.50376 1.50426 1.48180 1.05775 1.59812 1.19390 1.22347 0.90648 0.97884 0.91493 1.21662 0.96797 0.96923 0.99305 1.18594 0.91637 0.94790 0.92271 1.21506 1.06651 1.27893 1.01256 0.93563 1.25597 0.98558 0.98068 0.95560 1.70022 1.26678 1.42755 1.15721 0.85738 0.78259 0.80039 0.78786 1.20087 1.20966 1.19834 1.21843 0.96563 0.97730 0.98885 1.21564 0.97284 0.95975 0.85934 1.23027 1.00424 0.97682 0.92926 1.23183 1.00757 0.96869 0.97600 1.22778 1.02490 0.96368 0.95330 1.22976 1.02446 0.96815 0.93894 0.93360 0.89149 0.92531 0.88647 0.91533 0.92677 0.86126 0.92317 0.91649 0.94375 0.97775 0.92913 0.92031 0.93831 0.91750 0.90452 0.88710 0.89017 0.93061 0.90134 0.90080 0.90477 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 6.71 71.98 0.48 -2.30 16 2 C -0.06 -1.63 0.43 -52.93 -0.02 -1.65 16 3 C -0.16 -3.78 8.03 71.98 0.58 -3.21 16 4 C 0.52 17.82 6.48 87.66 0.57 18.38 16 5 O -0.59 -23.92 15.31 -3.05 -0.05 -23.97 16 6 N -0.60 -21.39 2.97 -819.72 -2.44 -23.83 16 7 C 0.10 3.37 3.91 86.22 0.34 3.71 16 8 C -0.11 -4.65 4.86 30.53 0.15 -4.50 16 9 C 0.05 2.20 1.94 -11.51 -0.02 2.18 16 10 C -0.54 -28.80 8.49 25.60 0.22 -28.58 16 11 H 0.05 2.50 7.75 -2.92 -0.02 2.48 16 12 C 0.02 1.15 5.24 84.66 0.44 1.60 16 13 N -0.91 -50.46 11.97 21.45 0.26 -50.20 16 14 Si 0.95 42.60 29.54 68.60 2.03 44.62 16 15 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 C -0.11 -4.69 5.30 30.67 0.16 -4.52 16 19 C 0.12 4.32 6.42 86.36 0.55 4.88 16 20 C -0.12 -2.66 2.41 -10.27 -0.02 -2.69 16 21 C -0.15 -2.99 7.33 31.18 0.23 -2.76 16 22 C -0.13 -2.07 8.09 31.18 0.25 -1.82 16 23 C -0.12 -1.97 6.27 31.12 0.20 -1.77 16 24 H 0.05 1.18 8.08 -2.39 -0.02 1.16 16 25 H 0.09 1.47 6.30 -2.39 -0.02 1.46 16 26 H 0.06 1.39 6.26 -2.39 -0.01 1.38 16 27 H 0.09 1.73 7.06 -2.38 -0.02 1.71 16 28 H 0.07 1.85 3.87 -2.39 -0.01 1.84 16 29 H 0.05 1.36 8.05 -2.39 -0.02 1.34 16 30 H 0.12 3.48 2.88 -2.39 -0.01 3.47 16 31 H 0.06 2.06 8.13 -2.39 -0.02 2.04 16 32 H 0.06 3.12 6.71 -2.39 -0.02 3.11 16 33 H 0.04 1.64 7.40 -2.39 -0.02 1.62 16 34 H 0.00 0.22 8.12 -2.39 -0.02 0.20 16 35 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 36 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 39 H 0.08 2.91 7.04 -2.39 -0.02 2.90 16 40 H 0.09 2.30 5.13 -2.39 -0.01 2.29 16 41 H 0.09 1.82 5.59 -2.39 -0.01 1.81 16 42 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.10 1.30 6.36 -2.39 -0.02 1.29 16 Total: -1.00 -61.76 333.08 4.86 -56.90 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.96 Total: 19.53 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: 4.10 Total: -23.05 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -2.18 Total: -74.03 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.05 Total: -23.97 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -61.76 4.86 -56.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336202851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.895 kcal (2) G-P(sol) polarization free energy of solvation -61.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds