Wall clock time and date at job start Tue Mar 31 2020 02:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47266 * 2 1 4 4 H 1.08993 * 110.43576 * 307.54205 * 3 2 1 5 5 C 1.54886 * 110.48543 * 70.22795 * 3 2 1 6 6 C 1.54889 * 102.74799 * 156.62248 * 5 3 2 7 7 C 1.54263 * 104.19745 * 322.05426 * 6 5 3 8 8 C 1.53877 * 106.59828 * 23.60874 * 7 6 5 9 9 H 1.08999 * 110.03588 * 240.71517 * 8 7 6 10 10 C 1.50704 * 110.07049 * 119.30565 * 8 7 6 11 11 O 1.21283 * 120.00126 * 242.80854 * 10 8 7 12 12 N 1.34775 * 120.00040 * 62.81444 * 10 8 7 13 13 C 1.46930 * 120.62811 * 359.71851 * 12 10 8 14 14 C 1.52769 * 109.00519 * 233.58374 * 13 12 10 15 15 C 1.53039 * 109.38121 * 305.58815 * 14 13 12 16 16 C 1.50706 * 109.45644 * 181.25998 * 15 14 13 17 17 H 1.07994 * 120.00004 * 275.02162 * 16 15 14 18 18 C 1.37882 * 119.99874 * 95.01635 * 16 15 14 19 19 N 1.31512 * 120.00075 * 186.16720 * 18 16 15 20 20 Si 1.86803 * 119.99938 * 6.17085 * 18 16 15 21 21 H 1.48497 * 109.47114 * 84.76648 * 20 18 16 22 22 H 1.48499 * 109.46988 * 204.77282 * 20 18 16 23 23 H 1.48501 * 109.46984 * 324.77108 * 20 18 16 24 24 C 1.53039 * 109.53749 * 61.24502 * 15 14 13 25 25 C 1.46919 * 120.63328 * 180.02562 * 12 10 8 26 26 H 1.09000 * 109.47334 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47470 * 59.99752 * 1 2 3 28 28 H 1.09003 * 109.47388 * 300.00025 * 1 2 3 29 29 H 1.09006 * 109.47692 * 120.00164 * 2 1 3 30 30 H 1.09003 * 109.47388 * 239.99975 * 2 1 3 31 31 H 1.09005 * 110.75364 * 274.93142 * 5 3 2 32 32 H 1.08998 * 110.75703 * 38.30384 * 5 3 2 33 33 H 1.09007 * 110.48758 * 203.37585 * 6 5 3 34 34 H 1.09001 * 110.59909 * 80.79105 * 6 5 3 35 35 H 1.09002 * 110.03438 * 264.32798 * 7 6 5 36 36 H 1.09000 * 110.03509 * 142.89705 * 7 6 5 37 37 H 1.09002 * 109.58913 * 353.41632 * 13 12 10 38 38 H 1.08995 * 109.58561 * 113.84730 * 13 12 10 39 39 H 1.09002 * 109.56172 * 185.54741 * 14 13 12 40 40 H 1.09001 * 109.35722 * 65.49868 * 14 13 12 41 41 H 1.08996 * 109.46169 * 301.21437 * 15 14 13 42 42 H 0.96998 * 120.00009 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.49240 * 178.68035 * 24 15 14 44 44 H 1.09000 * 109.50090 * 58.58310 * 24 15 14 45 45 H 1.08999 * 109.58450 * 246.15468 * 25 12 10 46 46 H 1.08999 * 109.58866 * 6.57483 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5801 2.0087 -0.8098 5 6 1.7579 2.1171 1.3654 6 6 2.8153 3.2480 1.4128 7 6 4.0702 2.6196 0.7723 8 6 3.5773 1.4716 -0.1259 9 1 3.9977 0.5250 0.2134 10 6 3.9731 1.7282 -1.5572 11 8 3.1190 1.8756 -2.4056 12 7 5.2763 1.7940 -1.8945 13 6 6.3225 1.6236 -0.8770 14 6 7.2723 2.8186 -0.9350 15 6 7.8026 2.9771 -2.3618 16 6 8.7638 4.1366 -2.4143 17 1 8.3913 5.1410 -2.5513 18 6 10.1188 3.9152 -2.2872 19 7 10.9473 4.9337 -2.2110 20 14 10.7777 2.1684 -2.2232 21 1 10.9634 1.6585 -3.6055 22 1 12.0813 2.1568 -1.5120 23 1 9.8123 1.3013 -1.5013 24 6 6.6349 3.2393 -3.3156 25 6 5.6779 2.0441 -3.2855 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 0.7494 2.5300 1.3912 32 1 1.9090 1.4124 2.1830 33 1 3.0178 3.5380 2.4438 34 1 2.4820 4.1092 0.8337 35 1 4.7299 2.2301 1.5476 36 1 4.5958 3.3632 0.1732 37 1 5.8657 1.5693 0.1112 38 1 6.8793 0.7078 -1.0752 39 1 8.1066 2.6552 -0.2527 40 1 6.7353 3.7214 -0.6441 41 1 8.3182 2.0645 -2.6610 42 1 11.9004 4.7779 -2.1212 43 1 7.0156 3.3753 -4.3279 44 1 6.1040 4.1382 -3.0023 45 1 6.1810 1.1633 -3.6845 46 1 4.7960 2.2670 -3.8860 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336202901.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:36 Heat of formation + Delta-G solvation = -70.423862 kcal Electronic energy + Delta-G solvation = -23179.903621 eV Core-core repulsion = 20067.753087 eV Total energy + Delta-G solvation = -3112.150533 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.45326 -38.02759 -36.72250 -33.70048 -33.11740 -31.60246 -30.75469 -29.07534 -27.64874 -26.47072 -23.47824 -22.66012 -22.41443 -20.98041 -20.37403 -19.55205 -18.20253 -16.98839 -16.74598 -15.97832 -15.48874 -14.69864 -14.50571 -14.39810 -14.31940 -13.61644 -13.25477 -13.20300 -13.19175 -12.92476 -12.64659 -12.51176 -12.10518 -11.98306 -11.85308 -11.56226 -11.30700 -11.01327 -11.00932 -10.82701 -10.80276 -10.62575 -10.60867 -10.49492 -10.43441 -9.97682 -9.73407 -9.42657 -9.31798 -9.14146 -8.55911 -8.15038 -6.12027 -4.11081 2.89998 3.23753 3.32362 3.32983 3.34335 4.37026 4.38430 4.52103 4.59100 4.95962 5.05321 5.13373 5.15465 5.23797 5.32067 5.41343 5.50374 5.52986 5.55965 5.63356 5.67358 5.70644 5.76653 5.81803 5.86474 5.87775 5.95192 6.01146 6.03084 6.06445 6.10465 6.21336 6.23410 6.30017 6.32677 6.46198 6.67073 6.72807 6.80828 6.94385 7.27024 7.40978 7.71193 7.79708 8.47490 8.48735 8.93906 9.51170 11.01485 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.029664 B = 0.004354 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.673830 B = 6429.455368 C = 6684.324801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.079 4.079 4 H 0.094 0.906 5 C -0.118 4.118 6 C -0.124 4.124 7 C -0.118 4.118 8 C -0.109 4.109 9 H 0.094 0.906 10 C 0.518 3.482 11 O -0.553 6.553 12 N -0.601 5.601 13 C 0.095 3.905 14 C -0.124 4.124 15 C 0.015 3.985 16 C -0.512 4.512 17 H 0.072 0.928 18 C 0.070 3.930 19 N -0.900 5.900 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.265 1.265 24 C -0.117 4.117 25 C 0.107 3.893 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.031 0.969 42 H 0.264 0.736 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.893 -9.426 7.654 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.098 4.098 4 H 0.112 0.888 5 C -0.156 4.156 6 C -0.161 4.161 7 C -0.156 4.156 8 C -0.130 4.130 9 H 0.112 0.888 10 C 0.306 3.694 11 O -0.432 6.432 12 N -0.333 5.333 13 C -0.027 4.027 14 C -0.163 4.163 15 C -0.004 4.004 16 C -0.549 4.549 17 H 0.090 0.910 18 C -0.131 4.131 19 N -0.538 5.538 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.217 1.217 23 H -0.190 1.190 24 C -0.155 4.155 25 C -0.015 4.015 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.115 -9.293 7.211 19.952 hybrid contribution 0.817 -0.879 0.047 1.201 sum -15.299 -10.172 7.259 19.754 Atomic orbital electron populations 1.21747 0.95857 1.01222 1.01856 1.21530 0.95973 0.96063 1.01607 1.21987 0.92737 0.96670 0.98362 0.88795 1.22572 0.98779 0.97367 0.96833 1.22353 0.95055 0.98153 1.00587 1.22248 0.98049 0.96949 0.98364 1.21997 0.97687 1.00585 0.92738 0.88780 1.20546 0.82017 0.76225 0.90591 1.90620 1.49530 1.51326 1.51726 1.48126 1.05367 1.70014 1.09827 1.22026 0.89699 1.00070 0.90947 1.22140 0.97218 0.95538 1.01399 1.19119 0.93491 0.97443 0.90325 1.20986 0.90270 0.93843 1.49829 0.91024 1.25083 0.97013 0.96639 0.94398 1.69914 1.03344 1.30452 1.50102 0.86860 0.78157 0.85823 0.78632 1.20248 1.21674 1.19010 1.21946 0.96394 0.96003 1.01191 1.21766 0.99184 0.98865 0.81687 0.93115 0.92632 0.92770 0.92262 0.92064 0.91548 0.91499 0.91483 0.91518 0.90803 0.90633 0.90279 0.92209 0.91650 0.92339 0.95076 0.92657 0.91375 0.92581 0.92306 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.79 37.15 0.36 -0.98 16 2 C -0.11 -1.16 5.28 -26.74 -0.14 -1.30 16 3 C -0.08 -0.90 2.18 -88.96 -0.19 -1.10 16 4 H 0.09 1.31 6.87 -51.93 -0.36 0.95 16 5 C -0.12 -1.12 5.67 -24.74 -0.14 -1.26 16 6 C -0.12 -1.27 6.83 -25.07 -0.17 -1.44 16 7 C -0.12 -1.37 4.70 -25.61 -0.12 -1.49 16 8 C -0.11 -1.35 1.99 -90.65 -0.18 -1.53 16 9 H 0.09 1.05 7.60 -51.93 -0.39 0.66 16 10 C 0.52 8.40 6.85 -10.98 -0.08 8.32 16 11 O -0.55 -10.54 14.82 5.56 0.08 -10.46 16 12 N -0.60 -9.96 2.96 -173.06 -0.51 -10.47 16 13 C 0.10 1.48 5.62 -3.93 -0.02 1.46 16 14 C -0.12 -2.37 5.33 -26.83 -0.14 -2.52 16 15 C 0.02 0.34 1.75 -91.73 -0.16 0.17 16 16 C -0.51 -13.74 8.85 -34.44 -0.30 -14.05 16 17 H 0.07 2.13 8.06 -52.49 -0.42 1.70 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 19 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 20 Si 0.88 20.72 27.02 -169.99 -4.59 16.12 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.27 -5.85 6.77 56.52 0.38 -5.47 16 24 C -0.12 -2.30 5.34 -26.64 -0.14 -2.44 16 25 C 0.11 1.86 6.43 -3.74 -0.02 1.84 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.44 7.56 -51.93 -0.39 0.04 16 29 H 0.06 0.53 8.02 -51.93 -0.42 0.11 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 32 H 0.07 0.57 7.97 -51.93 -0.41 0.15 16 33 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.75 7.55 -51.93 -0.39 0.36 16 36 H 0.07 1.04 6.87 -51.93 -0.36 0.68 16 37 H 0.08 1.02 4.34 -51.93 -0.23 0.80 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.13 7.83 -51.93 -0.41 0.73 16 41 H 0.03 0.69 5.24 -51.93 -0.27 0.42 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.08 1.44 7.00 -51.93 -0.36 1.07 16 LS Contribution 344.51 15.07 5.19 5.19 Total: -1.00 -30.12 344.51 -8.82 -38.95 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.21 Total: 1.23 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -1.55 Total: -14.46 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.26 Total: -36.58 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.59 Total: 16.12 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.12 -8.82 -38.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336202901.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.478 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds