Wall clock time and date at job start Tue Mar 31 2020 02:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46917 * 2 1 4 4 H 1.09001 * 110.01996 * 54.06079 * 3 2 1 5 5 C 1.54263 * 110.07509 * 292.64187 * 3 2 1 6 6 C 1.54885 * 104.19936 * 217.08380 * 5 3 2 7 7 C 1.54888 * 102.74809 * 37.94578 * 6 5 3 8 8 C 1.53875 * 110.03267 * 175.45279 * 3 2 1 9 9 H 1.09000 * 110.03704 * 238.62096 * 8 3 2 10 10 C 1.50701 * 110.03134 * 0.05226 * 8 3 2 11 11 O 1.21283 * 120.00446 * 90.49138 * 10 8 3 12 12 N 1.34780 * 119.99845 * 270.49018 * 10 8 3 13 13 C 1.46934 * 120.62820 * 4.91790 * 12 10 8 14 14 C 1.52761 * 109.00558 * 233.58540 * 13 12 10 15 15 C 1.53047 * 109.38378 * 305.58423 * 14 13 12 16 16 C 1.50695 * 109.44739 * 181.25580 * 15 14 13 17 17 H 1.08001 * 119.99932 * 239.94485 * 16 15 14 18 18 C 1.37876 * 119.99884 * 59.94232 * 16 15 14 19 19 N 1.31513 * 120.00234 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99776 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47008 * 90.00344 * 20 18 16 22 22 H 1.48504 * 109.46844 * 210.00150 * 20 18 16 23 23 H 1.48496 * 109.47445 * 330.00164 * 20 18 16 24 24 C 1.53038 * 109.53295 * 61.24406 * 15 14 13 25 25 C 1.46925 * 120.63389 * 185.19724 * 12 10 8 26 26 H 1.08998 * 109.46954 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46749 * 300.00022 * 1 2 3 28 28 H 1.09000 * 109.47126 * 59.99627 * 1 2 3 29 29 H 1.08998 * 109.46959 * 240.00378 * 2 1 3 30 30 H 1.08998 * 109.47269 * 119.99849 * 2 1 3 31 31 H 1.09005 * 110.48949 * 335.76364 * 5 3 2 32 32 H 1.09007 * 110.48719 * 98.40712 * 5 3 2 33 33 H 1.08999 * 110.76078 * 279.62988 * 6 5 3 34 34 H 1.09008 * 110.91779 * 156.32933 * 6 5 3 35 35 H 1.09004 * 110.48924 * 203.38210 * 7 6 5 36 36 H 1.09000 * 110.48846 * 80.73486 * 7 6 5 37 37 H 1.08993 * 109.58564 * 353.41943 * 13 12 10 38 38 H 1.09001 * 109.58131 * 113.84134 * 13 12 10 39 39 H 1.09003 * 109.55914 * 185.55354 * 14 13 12 40 40 H 1.08995 * 109.39020 * 65.52097 * 14 13 12 41 41 H 1.08992 * 109.46122 * 301.22786 * 15 14 13 42 42 H 0.96994 * 120.00275 * 180.02562 * 19 18 16 43 43 H 1.08992 * 109.49932 * 178.68074 * 24 15 14 44 44 H 1.09004 * 109.52673 * 58.60381 * 24 15 14 45 45 H 1.08996 * 109.58833 * 246.15817 * 25 12 10 46 46 H 1.09002 * 109.57893 * 6.44130 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9947 0.8292 5 6 1.6906 2.1276 -1.3372 6 6 2.9166 3.0258 -1.6357 7 6 4.1038 2.1538 -1.1571 8 6 3.5744 1.4591 0.1146 9 1 3.8767 2.0193 0.9994 10 6 4.1017 0.0494 0.1902 11 8 4.4008 -0.5415 -0.8258 12 7 4.2409 -0.5547 1.3870 13 6 3.7833 0.1062 2.6169 14 6 4.9356 0.1454 3.6190 15 6 5.4741 -1.2716 3.8295 16 6 6.5907 -1.2389 4.8410 17 1 7.5792 -1.5755 4.5652 18 6 6.3503 -0.7792 6.1185 19 7 5.1466 -0.3698 6.4544 20 14 7.7343 -0.7394 7.3725 21 1 8.4308 0.5701 7.2995 22 1 7.1734 -0.9265 8.7347 23 1 8.6988 -1.8300 7.0802 24 6 6.0040 -1.8200 2.5027 25 6 4.8587 -1.8840 1.4873 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5614 1.3846 -2.1243 32 1 0.7905 2.7334 -1.2318 33 1 2.8640 3.9533 -1.0654 34 1 2.9959 3.2342 -2.7027 35 1 4.9649 2.7785 -0.9200 36 1 4.3644 1.4150 -1.9150 37 1 3.4648 1.1232 2.3884 38 1 2.9503 -0.4525 3.0436 39 1 4.5798 0.5443 4.5689 40 1 5.7304 0.7829 3.2317 41 1 4.6727 -1.9142 4.1938 42 1 4.9776 -0.0460 7.3530 43 1 6.4086 -2.8201 2.6580 44 1 6.7889 -1.1647 2.1250 45 1 4.1153 -2.6083 1.8201 46 1 5.2474 -2.1806 0.5130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336202903.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:39 Heat of formation + Delta-G solvation = -80.783781 kcal Electronic energy + Delta-G solvation = -23420.246067 eV Core-core repulsion = 20307.646294 eV Total energy + Delta-G solvation = -3112.599773 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.75709 -39.15428 -37.92710 -35.34344 -34.03768 -33.14787 -31.85848 -30.14447 -28.47718 -27.90273 -24.94810 -24.01898 -23.72264 -22.34692 -21.41119 -20.73111 -19.18515 -18.52665 -17.89680 -16.98023 -16.85010 -16.48246 -15.90696 -15.52383 -15.19608 -14.91410 -14.81540 -14.57524 -14.21447 -14.11197 -13.86488 -13.40743 -13.35571 -13.09387 -12.94226 -12.80132 -12.50619 -12.38919 -12.20268 -12.13836 -11.90293 -11.85975 -11.75046 -11.53015 -11.44363 -11.39939 -11.30326 -11.01507 -10.88763 -10.55207 -10.37647 -9.51157 -8.08076 -6.21331 1.41169 1.43379 1.52148 1.68300 2.12763 2.44042 3.18455 3.45122 3.64415 3.66513 3.91344 4.14500 4.23659 4.24635 4.32857 4.39646 4.44753 4.47885 4.51538 4.58119 4.63012 4.69889 4.76375 4.80374 4.81366 4.87701 4.91400 4.97806 5.06628 5.15603 5.17497 5.20216 5.23262 5.26695 5.28534 5.39676 5.43321 5.45016 5.55684 5.58132 5.66245 5.98051 6.13318 6.38986 6.56248 6.87790 7.23983 7.46448 8.95402 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025805 B = 0.004380 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.787636 B = 6391.514919 C = 6440.020231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C -0.073 4.073 4 H 0.096 0.904 5 C -0.112 4.112 6 C -0.115 4.115 7 C -0.115 4.115 8 C -0.116 4.116 9 H 0.101 0.899 10 C 0.525 3.475 11 O -0.588 6.588 12 N -0.604 5.604 13 C 0.117 3.883 14 C -0.116 4.116 15 C 0.047 3.953 16 C -0.536 4.536 17 H 0.046 0.954 18 C 0.020 3.980 19 N -0.911 5.911 20 Si 0.948 3.052 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.274 1.274 24 C -0.112 4.112 25 C 0.118 3.882 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.028 0.972 41 H 0.002 0.998 42 H 0.262 0.738 43 H 0.061 0.939 44 H 0.041 0.959 45 H 0.065 0.935 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.171 6.934 -12.156 16.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C -0.092 4.092 4 H 0.114 0.886 5 C -0.149 4.149 6 C -0.152 4.152 7 C -0.153 4.153 8 C -0.137 4.137 9 H 0.119 0.881 10 C 0.315 3.685 11 O -0.470 6.470 12 N -0.336 5.336 13 C -0.005 4.005 14 C -0.154 4.154 15 C 0.028 3.972 16 C -0.574 4.574 17 H 0.064 0.936 18 C -0.179 4.179 19 N -0.550 5.550 20 Si 0.774 3.226 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.151 4.151 25 C -0.005 4.005 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.046 0.954 41 H 0.020 0.980 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.083 0.917 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.114 6.674 -12.507 16.853 hybrid contribution 1.136 -0.458 1.150 1.680 sum -7.978 6.216 -11.357 15.207 Atomic orbital electron populations 1.21711 0.93867 1.01726 1.02657 1.21788 0.97673 0.96269 1.00953 1.21770 0.90810 0.96360 1.00265 0.88556 1.22423 0.98770 0.98355 0.95385 1.22470 0.93085 0.97971 1.01719 1.22366 0.99057 0.98532 0.95341 1.22214 0.98104 0.91642 1.01712 0.88111 1.20935 0.76218 0.89225 0.82096 1.90586 1.53526 1.67526 1.35352 1.48294 1.59402 1.18765 1.07105 1.21803 0.96982 0.97999 0.83721 1.21724 0.95955 0.99221 0.98536 1.18589 0.94634 0.92982 0.90981 1.21536 0.96482 1.42586 0.96818 0.93594 1.25606 0.97539 0.94957 0.99811 1.69938 1.21337 1.43770 1.19989 0.85717 0.79856 0.78386 0.78632 1.20250 1.20776 1.19864 1.21844 0.96696 1.00519 0.96006 1.21526 0.95358 0.84065 0.99562 0.93203 0.91787 0.91499 0.93724 0.93117 0.92282 0.89329 0.89868 0.90448 0.91119 0.92058 0.88381 0.91844 0.90101 0.95363 0.97954 0.92877 0.92004 0.94035 0.91666 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.76 71.98 0.70 -2.01 16 2 C -0.13 -3.17 4.12 30.59 0.13 -3.05 16 3 C -0.07 -1.56 2.87 -10.07 -0.03 -1.59 16 4 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 5 C -0.11 -1.97 5.51 31.67 0.17 -1.80 16 6 C -0.12 -1.98 6.91 31.88 0.22 -1.76 16 7 C -0.12 -2.75 6.31 31.67 0.20 -2.55 16 8 C -0.12 -3.01 2.40 -10.81 -0.03 -3.04 16 9 H 0.10 2.49 6.33 -2.39 -0.02 2.48 16 10 C 0.52 17.84 4.62 87.66 0.41 18.25 16 11 O -0.59 -23.46 14.59 -3.04 -0.04 -23.51 16 12 N -0.60 -21.32 2.41 -819.72 -1.97 -23.29 16 13 C 0.12 4.04 5.47 86.22 0.47 4.52 16 14 C -0.12 -5.08 5.14 30.53 0.16 -4.92 16 15 C 0.05 2.25 2.07 -11.51 -0.02 2.23 16 16 C -0.54 -28.96 8.56 25.60 0.22 -28.74 16 17 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 18 C 0.02 1.07 5.30 84.65 0.45 1.52 16 19 N -0.91 -49.94 11.31 21.45 0.24 -49.69 16 20 Si 0.95 42.65 29.54 68.60 2.03 44.68 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 C -0.11 -4.70 5.30 30.67 0.16 -4.54 16 25 C 0.12 4.37 6.42 86.36 0.55 4.92 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.07 1.09 7.50 -2.39 -0.02 1.07 16 29 H 0.04 1.30 7.27 -2.39 -0.02 1.29 16 30 H 0.05 1.43 5.97 -2.39 -0.01 1.42 16 31 H 0.06 1.16 7.77 -2.38 -0.02 1.14 16 32 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 1.77 6.83 -2.39 -0.02 1.75 16 37 H 0.10 2.82 5.42 -2.39 -0.01 2.81 16 38 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 39 H 0.08 3.96 6.03 -2.39 -0.01 3.95 16 40 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 43 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 45 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.08 2.87 7.04 -2.39 -0.02 2.85 16 Total: -1.00 -60.99 341.96 4.95 -56.04 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.93 Total: 18.33 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 3.76 Total: -22.56 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -1.73 Total: -72.99 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.04 Total: -23.51 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -60.99 4.95 -56.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336202903.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.740 kcal (2) G-P(sol) polarization free energy of solvation -60.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds