Wall clock time and date at job start Tue Mar 31 2020 02:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47290 * 2 1 4 4 H 1.08998 * 110.05767 * 304.03631 * 3 2 1 5 5 C 1.54269 * 110.03408 * 65.45274 * 3 2 1 6 6 C 1.54885 * 104.31572 * 142.82712 * 5 3 2 7 7 C 1.55027 * 102.68506 * 322.22798 * 6 5 3 8 8 C 1.53876 * 110.03168 * 182.61734 * 3 2 1 9 9 H 1.09004 * 110.03584 * 121.43432 * 8 3 2 10 10 C 1.50695 * 110.03433 * 0.04786 * 8 3 2 11 11 O 1.21279 * 120.00102 * 271.32727 * 10 8 3 12 12 N 1.34772 * 120.00038 * 91.32666 * 10 8 3 13 13 C 1.46927 * 120.63242 * 359.72287 * 12 10 8 14 14 C 1.52766 * 109.01016 * 233.58780 * 13 12 10 15 15 C 1.53048 * 109.37753 * 305.58598 * 14 13 12 16 16 C 1.50698 * 109.44389 * 181.25681 * 15 14 13 17 17 H 1.08000 * 119.99553 * 239.93522 * 16 15 14 18 18 C 1.37876 * 120.00256 * 59.93608 * 16 15 14 19 19 N 1.31512 * 120.00150 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99838 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47021 * 90.00114 * 20 18 16 22 22 H 1.48493 * 109.46817 * 210.00014 * 20 18 16 23 23 H 1.48496 * 109.47155 * 329.99957 * 20 18 16 24 24 C 1.53037 * 109.54131 * 61.24085 * 15 14 13 25 25 C 1.46930 * 120.63205 * 180.02562 * 12 10 8 26 26 H 1.08993 * 109.47158 * 300.00447 * 1 2 3 27 27 H 1.09007 * 109.46642 * 60.00375 * 1 2 3 28 28 H 1.09000 * 109.47219 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47234 * 239.99367 * 2 1 3 30 30 H 1.09007 * 109.46886 * 120.00119 * 2 1 3 31 31 H 1.09002 * 110.48166 * 261.57277 * 5 3 2 32 32 H 1.08998 * 110.48484 * 24.08100 * 5 3 2 33 33 H 1.09005 * 110.75393 * 80.43756 * 6 5 3 34 34 H 1.08999 * 110.75888 * 203.80917 * 6 5 3 35 35 H 1.08996 * 110.36921 * 279.09984 * 7 6 5 36 36 H 1.09003 * 110.52543 * 156.51271 * 7 6 5 37 37 H 1.09010 * 109.58333 * 353.41721 * 13 12 10 38 38 H 1.08993 * 109.59275 * 113.84225 * 13 12 10 39 39 H 1.08994 * 109.56503 * 185.54770 * 14 13 12 40 40 H 1.09000 * 109.38630 * 65.50565 * 14 13 12 41 41 H 1.09000 * 109.45347 * 301.21483 * 15 14 13 42 42 H 0.96998 * 120.00229 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.49838 * 178.68426 * 24 15 14 44 44 H 1.09002 * 109.52134 * 58.59637 * 24 15 14 45 45 H 1.09007 * 109.58324 * 246.15562 * 25 12 10 46 46 H 1.08996 * 109.58708 * 6.43306 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6243 1.9859 -0.8485 5 6 1.6485 2.1414 1.3183 6 6 2.8640 3.0424 1.6497 7 6 4.0663 2.1658 1.2145 8 6 3.5773 1.4579 -0.0660 9 1 3.9077 2.0090 -0.9465 10 6 4.1063 0.0476 -0.1115 11 8 4.3417 -0.5453 0.9200 12 7 4.3179 -0.5548 -1.2984 13 6 4.0319 0.1484 -2.5563 14 6 3.1039 -0.7150 -3.4091 15 6 3.7254 -2.1018 -3.5910 16 6 2.8260 -2.9448 -4.4577 17 1 2.4139 -3.8660 -4.0729 18 6 2.5291 -2.5402 -5.7419 19 7 3.0304 -1.4183 -6.2104 20 14 1.4146 -3.5858 -6.8165 21 1 0.0038 -3.1648 -6.6234 22 1 1.7933 -3.4092 -8.2414 23 1 1.5610 -5.0144 -6.4388 24 6 3.8913 -2.7715 -2.2250 25 6 4.8328 -1.9296 -1.3589 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 0.7524 2.7460 1.1780 32 1 1.4920 1.4065 2.1079 33 1 2.8302 3.9651 1.0703 34 1 2.9061 3.2570 2.7175 35 1 4.3025 1.4350 1.9878 36 1 4.9347 2.7882 0.9985 37 1 3.5469 1.1005 -2.3406 38 1 4.9620 0.3240 -3.0966 39 1 2.9645 -0.2480 -4.3841 40 1 2.1395 -0.8112 -2.9105 41 1 4.7006 -2.0028 -4.0679 42 1 2.8212 -1.1335 -7.1137 43 1 4.3123 -3.7682 -2.3572 44 1 2.9198 -2.8486 -1.7368 45 1 5.8299 -1.9272 -1.7994 46 1 4.8787 -2.3472 -0.3532 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336202904.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:44 Heat of formation + Delta-G solvation = -67.874564 kcal Electronic energy + Delta-G solvation = -23719.400675 eV Core-core repulsion = 20607.360687 eV Total energy + Delta-G solvation = -3112.039988 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.45442 -37.79373 -36.48065 -33.51210 -32.96211 -31.43701 -30.21518 -28.98197 -27.47521 -26.11518 -23.27255 -22.81005 -22.24017 -21.03302 -20.38179 -19.10815 -17.82168 -16.94265 -16.21794 -15.74637 -15.47855 -14.60609 -14.56453 -14.30516 -14.23257 -13.34627 -13.13281 -13.10713 -12.82264 -12.63355 -12.53742 -12.13423 -11.93003 -11.68660 -11.36333 -11.31541 -11.07481 -10.99927 -10.93069 -10.73092 -10.65106 -10.54764 -10.39562 -10.36212 -10.25897 -10.05524 -9.62621 -9.23246 -9.16580 -8.89572 -8.38177 -7.94909 -6.04461 -4.10431 3.05230 3.27030 3.34309 3.37725 3.53002 4.39752 4.53592 4.64063 4.72848 5.11489 5.25063 5.26361 5.33952 5.42706 5.46206 5.62609 5.64439 5.69757 5.71573 5.80724 5.82708 5.90197 5.92435 5.96766 6.06654 6.12358 6.14150 6.17243 6.25702 6.32680 6.33625 6.40420 6.47595 6.48652 6.58237 6.68792 6.91008 7.05584 7.16778 7.28137 7.65677 7.91469 7.98463 8.03725 8.39245 8.64815 8.92980 9.54793 11.01002 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.005087 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.044539 B = 5502.633629 C = 5918.140808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C -0.073 4.073 4 H 0.078 0.922 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.112 4.112 8 C -0.114 4.114 9 H 0.091 0.909 10 C 0.525 3.475 11 O -0.560 6.560 12 N -0.601 5.601 13 C 0.101 3.899 14 C -0.123 4.123 15 C 0.049 3.951 16 C -0.511 4.511 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.123 4.123 25 C 0.111 3.889 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.040 0.960 41 H 0.026 0.974 42 H 0.260 0.740 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 8.661 10.989 14.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.092 4.092 4 H 0.096 0.904 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.150 4.150 8 C -0.135 4.135 9 H 0.109 0.891 10 C 0.314 3.686 11 O -0.440 6.440 12 N -0.332 5.332 13 C -0.021 4.021 14 C -0.162 4.162 15 C 0.031 3.969 16 C -0.549 4.549 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.161 4.161 25 C -0.011 4.011 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.680 8.438 11.333 14.146 hybrid contribution -0.632 -0.531 -0.938 1.250 sum -1.313 7.907 10.394 13.126 Atomic orbital electron populations 1.21724 0.95842 1.01533 1.01249 1.21911 0.96113 0.95714 1.03575 1.21667 0.92107 0.96994 0.98440 0.90401 1.22437 0.97587 0.98303 0.97058 1.22497 0.94884 0.97945 1.00723 1.22374 0.97487 0.98493 0.96666 1.22079 0.96937 0.94015 1.00501 0.89063 1.20316 0.76813 0.88326 0.83169 1.90600 1.53671 1.66558 1.33174 1.48261 1.63702 1.15195 1.06090 1.21988 1.00258 0.95666 0.84150 1.21954 0.96116 0.98231 0.99877 1.18626 0.96636 0.91708 0.89957 1.21202 1.29190 1.06906 0.97610 0.92761 1.24943 0.96004 0.95130 0.97788 1.69831 1.44748 1.21746 1.16773 0.86636 0.80976 0.80893 0.79762 1.20744 1.21258 1.19973 1.21991 0.97963 0.98111 0.98007 1.21664 0.97061 0.81508 1.00879 0.93139 0.92803 0.92886 0.90356 0.91397 0.91750 0.91360 0.91641 0.91588 0.89736 0.91794 0.91303 0.92165 0.87815 0.94112 0.95541 0.93001 0.92285 0.93021 0.92424 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.74 37.16 0.36 -1.55 16 2 C -0.14 -2.03 4.11 -26.73 -0.11 -2.14 16 3 C -0.07 -0.95 2.90 -89.50 -0.26 -1.21 16 4 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 5 C -0.12 -1.29 5.41 -25.07 -0.14 -1.43 16 6 C -0.12 -1.26 6.92 -24.67 -0.17 -1.43 16 7 C -0.11 -1.39 6.31 -24.99 -0.16 -1.55 16 8 C -0.11 -1.58 2.44 -90.65 -0.22 -1.80 16 9 H 0.09 1.17 6.25 -51.93 -0.32 0.85 16 10 C 0.53 9.04 4.60 -10.99 -0.05 8.99 16 11 O -0.56 -11.10 14.45 5.56 0.08 -11.02 16 12 N -0.60 -10.67 2.40 -173.05 -0.42 -11.08 16 13 C 0.10 1.79 5.88 -3.93 -0.02 1.76 16 14 C -0.12 -2.65 5.07 -26.83 -0.14 -2.79 16 15 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 16 C -0.51 -13.46 8.56 -34.44 -0.29 -13.76 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 19 N -0.89 -24.17 11.30 55.43 0.63 -23.54 16 20 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.12 -2.50 5.30 -26.63 -0.14 -2.64 16 25 C 0.11 2.04 6.43 -3.73 -0.02 2.02 16 26 H 0.05 0.58 7.42 -51.93 -0.39 0.19 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.37 5.26 -51.93 -0.27 1.10 16 30 H 0.07 1.13 7.11 -51.92 -0.37 0.76 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.80 7.80 -51.93 -0.40 0.40 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.21 6.86 -51.93 -0.36 0.86 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.05 5.49 -51.92 -0.29 0.77 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.10 2.50 6.03 -51.93 -0.31 2.18 16 40 H 0.04 0.89 6.89 -51.93 -0.36 0.53 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.08 1.43 7.00 -51.93 -0.36 1.06 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -27.88 339.92 -9.30 -37.18 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -8.05 Total: 2.64 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.65 Total: -14.99 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.21 Total: -34.63 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.88 -9.30 -37.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336202904.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.692 kcal (2) G-P(sol) polarization free energy of solvation -27.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds