Wall clock time and date at job start Tue Mar 31 2020 02:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47290 * 2 1 4 4 H 1.08998 * 110.05767 * 304.03631 * 3 2 1 5 5 C 1.54269 * 110.03408 * 65.45274 * 3 2 1 6 6 C 1.54885 * 104.31572 * 142.82712 * 5 3 2 7 7 C 1.55027 * 102.68506 * 322.22798 * 6 5 3 8 8 C 1.53876 * 110.03168 * 182.61734 * 3 2 1 9 9 H 1.09004 * 110.03584 * 121.43432 * 8 3 2 10 10 C 1.50695 * 110.03433 * 0.04786 * 8 3 2 11 11 O 1.21279 * 120.00102 * 271.32727 * 10 8 3 12 12 N 1.34772 * 120.00038 * 91.32666 * 10 8 3 13 13 C 1.46927 * 120.63242 * 359.72287 * 12 10 8 14 14 C 1.52766 * 109.01016 * 233.58780 * 13 12 10 15 15 C 1.53048 * 109.37753 * 305.58598 * 14 13 12 16 16 C 1.50698 * 109.44389 * 181.25681 * 15 14 13 17 17 H 1.08000 * 119.99553 * 239.93522 * 16 15 14 18 18 C 1.37876 * 120.00256 * 59.93608 * 16 15 14 19 19 N 1.31512 * 120.00150 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99838 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47021 * 90.00114 * 20 18 16 22 22 H 1.48493 * 109.46817 * 210.00014 * 20 18 16 23 23 H 1.48496 * 109.47155 * 329.99957 * 20 18 16 24 24 C 1.53037 * 109.54131 * 61.24085 * 15 14 13 25 25 C 1.46930 * 120.63205 * 180.02562 * 12 10 8 26 26 H 1.08993 * 109.47158 * 300.00447 * 1 2 3 27 27 H 1.09007 * 109.46642 * 60.00375 * 1 2 3 28 28 H 1.09000 * 109.47219 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47234 * 239.99367 * 2 1 3 30 30 H 1.09007 * 109.46886 * 120.00119 * 2 1 3 31 31 H 1.09002 * 110.48166 * 261.57277 * 5 3 2 32 32 H 1.08998 * 110.48484 * 24.08100 * 5 3 2 33 33 H 1.09005 * 110.75393 * 80.43756 * 6 5 3 34 34 H 1.08999 * 110.75888 * 203.80917 * 6 5 3 35 35 H 1.08996 * 110.36921 * 279.09984 * 7 6 5 36 36 H 1.09003 * 110.52543 * 156.51271 * 7 6 5 37 37 H 1.09010 * 109.58333 * 353.41721 * 13 12 10 38 38 H 1.08993 * 109.59275 * 113.84225 * 13 12 10 39 39 H 1.08994 * 109.56503 * 185.54770 * 14 13 12 40 40 H 1.09000 * 109.38630 * 65.50565 * 14 13 12 41 41 H 1.09000 * 109.45347 * 301.21483 * 15 14 13 42 42 H 0.96998 * 120.00229 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.49838 * 178.68426 * 24 15 14 44 44 H 1.09002 * 109.52134 * 58.59637 * 24 15 14 45 45 H 1.09007 * 109.58324 * 246.15562 * 25 12 10 46 46 H 1.08996 * 109.58708 * 6.43306 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6243 1.9859 -0.8485 5 6 1.6485 2.1414 1.3183 6 6 2.8640 3.0424 1.6497 7 6 4.0663 2.1658 1.2145 8 6 3.5773 1.4579 -0.0660 9 1 3.9077 2.0090 -0.9465 10 6 4.1063 0.0476 -0.1115 11 8 4.3417 -0.5453 0.9200 12 7 4.3179 -0.5548 -1.2984 13 6 4.0319 0.1484 -2.5563 14 6 3.1039 -0.7150 -3.4091 15 6 3.7254 -2.1018 -3.5910 16 6 2.8260 -2.9448 -4.4577 17 1 2.4139 -3.8660 -4.0729 18 6 2.5291 -2.5402 -5.7419 19 7 3.0304 -1.4183 -6.2104 20 14 1.4146 -3.5858 -6.8165 21 1 0.0038 -3.1648 -6.6234 22 1 1.7933 -3.4092 -8.2414 23 1 1.5610 -5.0144 -6.4388 24 6 3.8913 -2.7715 -2.2250 25 6 4.8328 -1.9296 -1.3589 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 0.7524 2.7460 1.1780 32 1 1.4920 1.4065 2.1079 33 1 2.8302 3.9651 1.0703 34 1 2.9061 3.2570 2.7175 35 1 4.3025 1.4350 1.9878 36 1 4.9347 2.7882 0.9985 37 1 3.5469 1.1005 -2.3406 38 1 4.9620 0.3240 -3.0966 39 1 2.9645 -0.2480 -4.3841 40 1 2.1395 -0.8112 -2.9105 41 1 4.7006 -2.0028 -4.0679 42 1 2.8212 -1.1335 -7.1137 43 1 4.3123 -3.7682 -2.3572 44 1 2.9198 -2.8486 -1.7368 45 1 5.8299 -1.9272 -1.7994 46 1 4.8787 -2.3472 -0.3532 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336202904.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:43 Heat of formation + Delta-G solvation = -80.747327 kcal Electronic energy + Delta-G solvation = -23719.958879 eV Core-core repulsion = 20607.360687 eV Total energy + Delta-G solvation = -3112.598192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.76196 -39.11487 -37.93845 -35.32052 -34.02568 -33.16126 -31.84656 -30.14662 -28.46446 -27.90306 -24.91738 -24.15435 -23.61423 -22.40877 -21.38630 -20.63920 -19.23122 -18.53107 -17.90955 -16.94583 -16.77362 -16.45050 -15.95924 -15.48389 -15.33935 -14.85690 -14.76939 -14.51228 -14.22084 -14.07476 -14.00881 -13.36291 -13.32486 -13.10181 -12.95419 -12.81743 -12.46435 -12.41312 -12.19024 -12.15017 -11.90602 -11.84341 -11.75988 -11.53329 -11.45269 -11.37300 -11.27998 -11.00133 -10.87733 -10.54300 -10.35294 -9.49124 -8.07511 -6.20408 1.40839 1.43242 1.51774 1.69283 2.13705 2.44175 3.19149 3.45274 3.66076 3.67617 3.92719 4.15653 4.20642 4.26339 4.33579 4.40954 4.44436 4.48187 4.52130 4.58218 4.62468 4.70576 4.77408 4.80535 4.82680 4.87068 4.88923 4.98236 5.06962 5.15347 5.17894 5.18971 5.23952 5.26425 5.31126 5.39737 5.43673 5.46745 5.56184 5.59093 5.67456 6.00127 6.14886 6.40130 6.57337 6.88486 7.25426 7.47202 8.95888 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.005087 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.044539 B = 5502.633629 C = 5918.140808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C -0.072 4.072 4 H 0.091 0.909 5 C -0.114 4.114 6 C -0.114 4.114 7 C -0.112 4.112 8 C -0.114 4.114 9 H 0.107 0.893 10 C 0.524 3.476 11 O -0.589 6.589 12 N -0.604 5.604 13 C 0.113 3.887 14 C -0.111 4.111 15 C 0.047 3.953 16 C -0.534 4.534 17 H 0.044 0.956 18 C 0.021 3.979 19 N -0.910 5.910 20 Si 0.946 3.054 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.274 1.274 24 C -0.111 4.111 25 C 0.116 3.884 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.031 0.969 41 H 0.002 0.998 42 H 0.262 0.738 43 H 0.060 0.940 44 H 0.039 0.961 45 H 0.067 0.933 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.489 10.563 11.471 15.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C -0.091 4.091 4 H 0.110 0.890 5 C -0.151 4.151 6 C -0.151 4.151 7 C -0.150 4.150 8 C -0.135 4.135 9 H 0.125 0.875 10 C 0.314 3.686 11 O -0.470 6.470 12 N -0.335 5.335 13 C -0.009 4.009 14 C -0.150 4.150 15 C 0.029 3.971 16 C -0.572 4.572 17 H 0.063 0.937 18 C -0.178 4.178 19 N -0.550 5.550 20 Si 0.772 3.228 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.150 4.150 25 C -0.006 4.006 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.049 0.951 41 H 0.020 0.980 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.350 10.346 11.820 15.766 hybrid contribution -0.412 -1.190 -1.079 1.658 sum -1.762 9.156 10.741 14.224 Atomic orbital electron populations 1.21695 0.94393 1.01392 1.02453 1.21813 0.97422 0.96773 1.00920 1.21728 0.91336 0.95770 1.00296 0.89025 1.22428 0.98975 0.98304 0.95390 1.22493 0.92884 0.97910 1.01859 1.22379 0.99180 0.98361 0.95076 1.22211 0.97546 0.91646 1.02130 0.87475 1.20959 0.75810 0.89544 0.82239 1.90586 1.54742 1.67651 1.34038 1.48293 1.63838 1.14886 1.06519 1.21848 0.99678 0.95885 0.83485 1.21689 0.96454 0.97543 0.99285 1.18588 0.94853 0.92924 0.90765 1.21512 1.29938 1.07142 0.98621 0.93723 1.25580 0.97194 0.96179 0.98845 1.69937 1.45408 1.22620 1.17019 0.85748 0.79418 0.79395 0.78230 1.20258 1.20792 1.19922 1.21821 0.97949 0.98443 0.96739 1.21530 0.96898 0.81939 1.00273 0.91129 0.92279 0.93803 0.93286 0.93694 0.89631 0.92474 0.89648 0.90369 0.92174 0.90289 0.88353 0.91837 0.90222 0.95064 0.98026 0.92904 0.92169 0.94173 0.91497 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.74 71.98 0.70 -2.85 16 2 C -0.13 -3.87 4.11 30.59 0.13 -3.75 16 3 C -0.07 -1.72 2.90 -10.07 -0.03 -1.75 16 4 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 5 C -0.11 -2.18 5.41 31.67 0.17 -2.00 16 6 C -0.11 -1.93 6.92 31.93 0.22 -1.70 16 7 C -0.11 -2.50 6.31 31.72 0.20 -2.30 16 8 C -0.11 -2.92 2.44 -10.82 -0.03 -2.95 16 9 H 0.11 2.40 6.25 -2.39 -0.01 2.39 16 10 C 0.52 17.70 4.60 87.66 0.40 18.10 16 11 O -0.59 -23.40 14.45 -3.03 -0.04 -23.45 16 12 N -0.60 -21.22 2.40 -819.79 -1.97 -23.19 16 13 C 0.11 3.89 5.88 86.22 0.51 4.40 16 14 C -0.11 -4.83 5.07 30.53 0.15 -4.67 16 15 C 0.05 2.27 2.07 -11.51 -0.02 2.24 16 16 C -0.53 -28.76 8.56 25.60 0.22 -28.54 16 17 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 18 C 0.02 1.13 5.30 84.65 0.45 1.58 16 19 N -0.91 -49.77 11.30 21.45 0.24 -49.53 16 20 Si 0.95 42.64 29.54 68.60 2.03 44.66 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 C -0.11 -4.65 5.30 30.66 0.16 -4.49 16 25 C 0.12 4.31 6.43 86.35 0.56 4.87 16 26 H 0.07 1.46 7.42 -2.39 -0.02 1.45 16 27 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.72 5.26 -2.39 -0.01 1.71 16 30 H 0.04 1.51 7.11 -2.38 -0.02 1.49 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.23 7.80 -2.39 -0.02 1.21 16 33 H 0.08 1.15 8.14 -2.38 -0.02 1.14 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.66 6.86 -2.39 -0.02 1.64 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.10 2.80 5.49 -2.38 -0.01 2.79 16 38 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.08 3.88 6.03 -2.39 -0.01 3.87 16 40 H 0.03 1.38 6.89 -2.39 -0.02 1.37 16 41 H 0.00 0.08 8.14 -2.39 -0.02 0.07 16 42 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 43 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 46 H 0.08 2.86 7.00 -2.39 -0.02 2.84 16 Total: -1.00 -60.86 339.92 4.98 -55.88 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.94 Total: 19.45 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 3.79 Total: -23.82 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -1.73 Total: -72.72 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.04 Total: -23.45 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -60.86 4.98 -55.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336202904.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.869 kcal (2) G-P(sol) polarization free energy of solvation -60.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds