Wall clock time and date at job start Tue Mar 31 2020 02:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47173 * 2 1 4 4 H 1.08996 * 110.53836 * 52.39421 * 3 2 1 5 5 C 1.54260 * 110.48832 * 289.77600 * 3 2 1 6 6 C 1.53874 * 106.60225 * 217.71507 * 5 3 2 7 7 C 1.54272 * 106.59529 * 359.97438 * 6 5 3 8 8 C 1.54892 * 104.19641 * 23.61247 * 7 6 5 9 9 H 1.09004 * 110.91193 * 80.44247 * 8 7 6 10 10 C 1.50696 * 110.75651 * 203.74373 * 8 7 6 11 11 O 1.21281 * 120.00255 * 88.92661 * 10 8 7 12 12 N 1.34778 * 119.99620 * 268.92555 * 10 8 7 13 13 C 1.46925 * 120.63281 * 355.49681 * 12 10 8 14 14 C 1.53186 * 108.78080 * 126.39050 * 13 12 10 15 15 C 1.53046 * 109.31472 * 54.63016 * 14 13 12 16 16 C 1.50696 * 109.46101 * 178.61895 * 15 14 13 17 17 H 1.08001 * 120.00280 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99833 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00129 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99885 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46650 * 90.00184 * 20 18 16 22 22 H 1.48498 * 109.46867 * 209.99824 * 20 18 16 23 23 H 1.48496 * 109.47067 * 330.00296 * 20 18 16 24 24 C 1.53044 * 109.53616 * 298.64162 * 15 14 13 25 25 C 1.46931 * 120.63003 * 175.49301 * 12 10 8 26 26 H 1.09004 * 109.47168 * 299.99924 * 1 2 3 27 27 H 1.09002 * 109.47360 * 59.99520 * 1 2 3 28 28 H 1.08994 * 109.47453 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46766 * 239.99746 * 2 1 3 30 30 H 1.09002 * 109.47360 * 120.00480 * 2 1 3 31 31 H 1.09003 * 110.03514 * 337.00265 * 5 3 2 32 32 H 1.09001 * 110.03228 * 98.42566 * 5 3 2 33 33 H 1.08992 * 110.03389 * 119.28526 * 6 5 3 34 34 H 1.08997 * 110.03054 * 240.72003 * 6 5 3 35 35 H 1.09000 * 110.48614 * 264.93701 * 7 6 5 36 36 H 1.09002 * 110.48183 * 142.29053 * 7 6 5 37 37 H 1.08995 * 109.58942 * 6.59741 * 13 12 10 38 38 H 1.09007 * 109.58283 * 246.17924 * 13 12 10 39 39 H 1.09004 * 109.49899 * 294.68456 * 14 13 12 40 40 H 1.08999 * 109.50420 * 174.58573 * 14 13 12 41 41 H 1.09000 * 109.45403 * 58.66013 * 15 14 13 42 42 H 0.96994 * 120.00039 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.49285 * 181.31304 * 24 15 14 44 44 H 1.08996 * 109.49560 * 301.40608 * 24 15 14 45 45 H 1.08990 * 109.58768 * 113.82178 * 25 12 10 46 46 H 1.09001 * 109.58481 * 353.39557 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5803 2.0106 0.8086 5 6 1.7590 2.1145 -1.3598 6 6 2.9738 3.0073 -1.6683 7 6 3.9503 2.8470 -0.4848 8 6 3.5832 1.4723 0.1271 9 1 4.0332 0.6598 -0.4434 10 6 4.0017 1.4025 1.5731 11 8 3.2413 1.7713 2.4430 12 7 5.2210 0.9301 1.8997 13 6 6.1151 0.3884 0.8673 14 6 7.4652 1.1066 0.9579 15 6 8.0071 0.9876 2.3842 16 6 9.3512 1.6639 2.4686 17 1 9.7765 2.1312 1.5928 18 6 10.0384 1.6850 3.6638 19 7 9.5212 1.1146 4.7299 20 14 11.7048 2.5227 3.7682 21 1 11.5193 3.9496 4.1352 22 1 12.5332 1.8497 4.8008 23 1 12.3865 2.4346 2.4519 24 6 7.0363 1.6592 3.3582 25 6 5.6814 0.9472 3.2949 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6464 1.3564 -2.1348 32 1 0.8559 2.7215 -1.2968 33 1 3.4506 2.6824 -2.5930 34 1 2.6601 4.0475 -1.7549 35 1 3.7987 3.6422 0.2451 36 1 4.9812 2.8441 -0.8387 37 1 5.6786 0.5538 -0.1176 38 1 6.2577 -0.6798 1.0313 39 1 7.3353 2.1588 0.7047 40 1 8.1683 0.6487 0.2622 41 1 8.1135 -0.0652 2.6455 42 1 10.0045 1.1298 5.5707 43 1 7.4342 1.5946 4.3709 44 1 6.9105 2.7062 3.0824 45 1 5.7887 -0.0752 3.6568 46 1 4.9587 1.4815 3.9116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336202905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:47 Heat of formation + Delta-G solvation = -72.250994 kcal Electronic energy + Delta-G solvation = -23043.178086 eV Core-core repulsion = 19930.948322 eV Total energy + Delta-G solvation = -3112.229764 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.19282 -37.97082 -36.51055 -33.58512 -33.18922 -31.11964 -30.56826 -28.89628 -27.63612 -26.13369 -23.44821 -22.79205 -22.30220 -21.10374 -19.94709 -19.34450 -18.14328 -17.13028 -16.31921 -15.64766 -15.26604 -14.61019 -14.52617 -14.46825 -14.10678 -13.55396 -13.26239 -13.10214 -12.97216 -12.78866 -12.45790 -12.26584 -12.10332 -11.83829 -11.73164 -11.30771 -11.21875 -11.11908 -10.93789 -10.68300 -10.61942 -10.54164 -10.47535 -10.43905 -10.36004 -10.06623 -9.57016 -9.41019 -9.05943 -8.91063 -8.37609 -7.95503 -6.02312 -4.09191 3.01877 3.28303 3.35518 3.37855 3.52910 4.40670 4.44127 4.59732 4.64346 5.03849 5.08350 5.16979 5.27288 5.27770 5.30314 5.48424 5.50796 5.53959 5.61579 5.65801 5.78726 5.79669 5.87220 5.89944 5.93585 5.99239 6.05714 6.10709 6.14608 6.22758 6.27311 6.32703 6.42811 6.46382 6.48676 6.62918 6.87534 6.97312 7.20665 7.34872 7.69411 7.91679 7.98221 8.07117 8.39743 8.64641 8.94243 9.55984 11.03075 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.032241 B = 0.004013 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.245548 B = 6974.941441 C = 7375.941298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.077 4.077 4 H 0.090 0.910 5 C -0.118 4.118 6 C -0.122 4.122 7 C -0.109 4.109 8 C -0.113 4.113 9 H 0.095 0.905 10 C 0.518 3.482 11 O -0.556 6.556 12 N -0.600 5.600 13 C 0.104 3.896 14 C -0.124 4.124 15 C 0.049 3.951 16 C -0.514 4.514 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.122 4.122 25 C 0.109 3.891 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.027 0.973 42 H 0.261 0.739 43 H 0.103 0.897 44 H 0.037 0.963 45 H 0.057 0.943 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.537 -1.064 -11.874 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.095 4.095 4 H 0.109 0.891 5 C -0.156 4.156 6 C -0.159 4.159 7 C -0.147 4.147 8 C -0.134 4.134 9 H 0.113 0.887 10 C 0.306 3.694 11 O -0.435 6.435 12 N -0.332 5.332 13 C -0.019 4.019 14 C -0.162 4.162 15 C 0.030 3.970 16 C -0.552 4.552 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.160 4.160 25 C -0.013 4.013 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.045 0.955 42 H 0.071 0.929 43 H 0.121 0.879 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.875 -0.918 -11.214 17.864 hybrid contribution 1.138 0.410 0.145 1.218 sum -12.737 -0.508 -11.069 16.883 Atomic orbital electron populations 1.21749 0.95856 1.01269 1.01788 1.21550 0.95955 0.96066 1.01784 1.21948 0.93028 0.96492 0.98078 0.89148 1.22214 0.98010 0.98576 0.96764 1.22114 0.95848 0.99923 0.98055 1.22261 0.99622 0.95455 0.97351 1.22375 0.97452 0.99861 0.93718 0.88660 1.20388 0.81283 0.77036 0.90700 1.90620 1.52183 1.49850 1.50847 1.48254 1.14973 1.60328 1.09597 1.21906 0.91819 0.97933 0.90205 1.22010 0.93566 0.99259 1.01338 1.18634 0.93293 0.96655 0.88390 1.21185 1.02587 1.35785 0.95627 0.92734 1.24967 0.97776 0.95349 0.95869 1.69842 1.38185 1.44238 1.00629 0.86622 0.84167 0.79610 0.77764 1.20742 1.21248 1.19968 1.22004 0.91500 0.97395 1.05149 1.21868 0.98080 1.00810 0.80530 0.92659 0.92817 0.93058 0.92139 0.92020 0.91742 0.91855 0.91708 0.91750 0.91044 0.90870 0.90996 0.91985 0.92878 0.92153 0.95518 0.92949 0.87917 0.94436 0.92478 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.79 37.16 0.36 -1.05 16 2 C -0.12 -1.27 5.32 -26.73 -0.14 -1.41 16 3 C -0.08 -0.92 2.16 -88.97 -0.19 -1.11 16 4 H 0.09 1.29 7.24 -51.93 -0.38 0.91 16 5 C -0.12 -1.13 5.69 -25.62 -0.15 -1.28 16 6 C -0.12 -1.18 6.80 -25.61 -0.17 -1.36 16 7 C -0.11 -1.33 6.26 -25.07 -0.16 -1.49 16 8 C -0.11 -1.49 1.87 -89.79 -0.17 -1.66 16 9 H 0.10 1.13 6.12 -51.93 -0.32 0.81 16 10 C 0.52 9.07 6.86 -10.99 -0.08 8.99 16 11 O -0.56 -11.48 15.26 5.56 0.08 -11.39 16 12 N -0.60 -10.86 2.97 -172.77 -0.51 -11.38 16 13 C 0.10 1.68 6.28 -3.71 -0.02 1.65 16 14 C -0.12 -2.36 5.30 -26.61 -0.14 -2.50 16 15 C 0.05 1.15 2.06 -91.73 -0.19 0.97 16 16 C -0.51 -13.63 8.56 -34.44 -0.29 -13.93 16 17 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 19 N -0.89 -24.81 11.31 55.43 0.63 -24.18 16 20 Si 0.89 20.92 29.54 -169.99 -5.02 15.89 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.12 -2.84 5.15 -26.61 -0.14 -2.97 16 25 C 0.11 2.21 6.42 -3.71 -0.02 2.19 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.45 7.62 -51.93 -0.40 0.05 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.58 7.95 -51.93 -0.41 0.17 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.55 7.71 -51.93 -0.40 0.15 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.94 5.45 -51.93 -0.28 0.66 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.10 2.67 6.04 -51.93 -0.31 2.36 16 44 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.07 1.55 7.03 -51.93 -0.37 1.19 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -28.98 349.33 -9.47 -38.45 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -8.32 Total: 0.73 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -1.59 Total: -13.39 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.11 Total: -35.55 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.98 -9.47 -38.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336202905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.803 kcal (2) G-P(sol) polarization free energy of solvation -28.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds