Wall clock time and date at job start Tue Mar 31 2020 02:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47173 * 2 1 4 4 H 1.08996 * 110.53836 * 52.39421 * 3 2 1 5 5 C 1.54260 * 110.48832 * 289.77600 * 3 2 1 6 6 C 1.53874 * 106.60225 * 217.71507 * 5 3 2 7 7 C 1.54272 * 106.59529 * 359.97438 * 6 5 3 8 8 C 1.54892 * 104.19641 * 23.61247 * 7 6 5 9 9 H 1.09004 * 110.91193 * 80.44247 * 8 7 6 10 10 C 1.50696 * 110.75651 * 203.74373 * 8 7 6 11 11 O 1.21281 * 120.00255 * 88.92661 * 10 8 7 12 12 N 1.34778 * 119.99620 * 268.92555 * 10 8 7 13 13 C 1.46925 * 120.63281 * 355.49681 * 12 10 8 14 14 C 1.53186 * 108.78080 * 126.39050 * 13 12 10 15 15 C 1.53046 * 109.31472 * 54.63016 * 14 13 12 16 16 C 1.50696 * 109.46101 * 178.61895 * 15 14 13 17 17 H 1.08001 * 120.00280 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99833 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00129 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99885 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46650 * 90.00184 * 20 18 16 22 22 H 1.48498 * 109.46867 * 209.99824 * 20 18 16 23 23 H 1.48496 * 109.47067 * 330.00296 * 20 18 16 24 24 C 1.53044 * 109.53616 * 298.64162 * 15 14 13 25 25 C 1.46931 * 120.63003 * 175.49301 * 12 10 8 26 26 H 1.09004 * 109.47168 * 299.99924 * 1 2 3 27 27 H 1.09002 * 109.47360 * 59.99520 * 1 2 3 28 28 H 1.08994 * 109.47453 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46766 * 239.99746 * 2 1 3 30 30 H 1.09002 * 109.47360 * 120.00480 * 2 1 3 31 31 H 1.09003 * 110.03514 * 337.00265 * 5 3 2 32 32 H 1.09001 * 110.03228 * 98.42566 * 5 3 2 33 33 H 1.08992 * 110.03389 * 119.28526 * 6 5 3 34 34 H 1.08997 * 110.03054 * 240.72003 * 6 5 3 35 35 H 1.09000 * 110.48614 * 264.93701 * 7 6 5 36 36 H 1.09002 * 110.48183 * 142.29053 * 7 6 5 37 37 H 1.08995 * 109.58942 * 6.59741 * 13 12 10 38 38 H 1.09007 * 109.58283 * 246.17924 * 13 12 10 39 39 H 1.09004 * 109.49899 * 294.68456 * 14 13 12 40 40 H 1.08999 * 109.50420 * 174.58573 * 14 13 12 41 41 H 1.09000 * 109.45403 * 58.66013 * 15 14 13 42 42 H 0.96994 * 120.00039 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.49285 * 181.31304 * 24 15 14 44 44 H 1.08996 * 109.49560 * 301.40608 * 24 15 14 45 45 H 1.08990 * 109.58768 * 113.82178 * 25 12 10 46 46 H 1.09001 * 109.58481 * 353.39557 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5803 2.0106 0.8086 5 6 1.7590 2.1145 -1.3598 6 6 2.9738 3.0073 -1.6683 7 6 3.9503 2.8470 -0.4848 8 6 3.5832 1.4723 0.1271 9 1 4.0332 0.6598 -0.4434 10 6 4.0017 1.4025 1.5731 11 8 3.2413 1.7713 2.4430 12 7 5.2210 0.9301 1.8997 13 6 6.1151 0.3884 0.8673 14 6 7.4652 1.1066 0.9579 15 6 8.0071 0.9876 2.3842 16 6 9.3512 1.6639 2.4686 17 1 9.7765 2.1312 1.5928 18 6 10.0384 1.6850 3.6638 19 7 9.5212 1.1146 4.7299 20 14 11.7048 2.5227 3.7682 21 1 11.5193 3.9496 4.1352 22 1 12.5332 1.8497 4.8008 23 1 12.3865 2.4346 2.4519 24 6 7.0363 1.6592 3.3582 25 6 5.6814 0.9472 3.2949 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6464 1.3564 -2.1348 32 1 0.8559 2.7215 -1.2968 33 1 3.4506 2.6824 -2.5930 34 1 2.6601 4.0475 -1.7549 35 1 3.7987 3.6422 0.2451 36 1 4.9812 2.8441 -0.8387 37 1 5.6786 0.5538 -0.1176 38 1 6.2577 -0.6798 1.0313 39 1 7.3353 2.1588 0.7047 40 1 8.1683 0.6487 0.2622 41 1 8.1135 -0.0652 2.6455 42 1 10.0045 1.1298 5.5707 43 1 7.4342 1.5946 4.3709 44 1 6.9105 2.7062 3.0824 45 1 5.7887 -0.0752 3.6568 46 1 4.9587 1.4815 3.9116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336202905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:46 Heat of formation + Delta-G solvation = -86.578740 kcal Electronic energy + Delta-G solvation = -23043.799384 eV Core-core repulsion = 19930.948322 eV Total energy + Delta-G solvation = -3112.851061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.50423 -39.20338 -37.99807 -35.37613 -34.08096 -32.93237 -32.09149 -30.04468 -28.47186 -27.94512 -24.98646 -24.19280 -23.51643 -22.34750 -21.21285 -20.48922 -19.55711 -18.64819 -18.11767 -17.01733 -16.54827 -16.19516 -15.98806 -15.57017 -15.07758 -14.95949 -14.72672 -14.55316 -14.22255 -13.97871 -13.96716 -13.64192 -13.38779 -13.12554 -12.93865 -12.79749 -12.70364 -12.46762 -12.17076 -12.13821 -12.00452 -11.94514 -11.59158 -11.44108 -11.43084 -11.31458 -11.22433 -11.02697 -10.84814 -10.59197 -10.40148 -9.53704 -8.08229 -6.22363 1.40857 1.42508 1.51621 1.64081 2.11775 2.43355 3.18546 3.44750 3.64403 3.70349 3.94415 4.13902 4.27979 4.29482 4.32941 4.36497 4.45837 4.46682 4.54190 4.58644 4.61750 4.69046 4.72790 4.75959 4.82592 4.90790 4.96895 4.98694 5.05991 5.15147 5.16625 5.22449 5.24174 5.28326 5.31842 5.42458 5.45596 5.47156 5.54079 5.60820 5.67786 5.97082 6.10324 6.37306 6.56840 6.89641 7.22622 7.46092 8.95309 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.032241 B = 0.004013 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.245548 B = 6974.941441 C = 7375.941298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.077 4.077 4 H 0.058 0.942 5 C -0.111 4.111 6 C -0.116 4.116 7 C -0.111 4.111 8 C -0.108 4.108 9 H 0.120 0.880 10 C 0.513 3.487 11 O -0.594 6.594 12 N -0.604 5.604 13 C 0.108 3.892 14 C -0.115 4.115 15 C 0.045 3.955 16 C -0.531 4.531 17 H 0.055 0.945 18 C 0.012 3.988 19 N -0.917 5.917 20 Si 0.951 3.049 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.265 1.265 24 C -0.109 4.109 25 C 0.119 3.881 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.002 0.998 42 H 0.260 0.740 43 H 0.070 0.930 44 H 0.021 0.979 45 H 0.058 0.942 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.986 -1.359 -15.127 20.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.096 4.096 4 H 0.077 0.923 5 C -0.149 4.149 6 C -0.153 4.153 7 C -0.149 4.149 8 C -0.129 4.129 9 H 0.138 0.862 10 C 0.303 3.697 11 O -0.476 6.476 12 N -0.336 5.336 13 C -0.013 4.013 14 C -0.153 4.153 15 C 0.026 3.974 16 C -0.569 4.569 17 H 0.073 0.927 18 C -0.187 4.187 19 N -0.557 5.557 20 Si 0.777 3.223 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.190 1.190 24 C -0.148 4.148 25 C -0.003 4.003 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.131 0.869 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.020 0.980 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.040 0.960 45 H 0.076 0.924 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.322 -1.215 -14.498 20.415 hybrid contribution 1.271 0.516 1.218 1.834 sum -13.050 -0.700 -13.280 18.632 Atomic orbital electron populations 1.21733 0.94889 1.01960 1.01871 1.21551 0.96862 0.95168 1.01613 1.21927 0.91783 0.97135 0.98714 0.92301 1.22197 0.98246 0.98980 0.95453 1.22111 0.95154 1.00525 0.97510 1.22296 1.00937 0.93826 0.97809 1.22476 0.98624 1.01347 0.90431 0.86187 1.21251 0.80397 0.75566 0.92440 1.90601 1.53224 1.51220 1.52513 1.48327 1.15747 1.60667 1.08816 1.22026 0.89935 0.97902 0.91456 1.21868 0.95501 0.99711 0.98261 1.18616 0.92675 0.94652 0.91446 1.21598 1.03937 1.35771 0.95641 0.92708 1.25729 1.01144 0.96070 0.95711 1.69983 1.39393 1.45336 1.00968 0.85666 0.80257 0.78403 0.77989 1.20653 1.21106 1.18976 1.21754 0.93052 0.96724 1.03293 1.21510 0.96132 1.00155 0.82543 0.94144 0.91184 0.92082 0.89922 0.94461 0.89560 0.91250 0.89528 0.91182 0.93576 0.90150 0.86865 0.90925 0.93255 0.90703 0.97989 0.93113 0.91133 0.96039 0.92389 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.79 71.98 0.70 -1.80 16 2 C -0.11 -2.25 5.32 30.59 0.16 -2.09 16 3 C -0.08 -1.70 2.16 -9.73 -0.02 -1.72 16 4 H 0.06 1.69 7.24 -2.39 -0.02 1.67 16 5 C -0.11 -1.74 5.69 31.32 0.18 -1.56 16 6 C -0.12 -1.82 6.80 31.32 0.21 -1.61 16 7 C -0.11 -2.46 6.26 31.67 0.20 -2.26 16 8 C -0.11 -2.62 1.87 -10.26 -0.02 -2.64 16 9 H 0.12 2.33 6.12 -2.38 -0.01 2.31 16 10 C 0.51 17.79 6.86 87.66 0.60 18.39 16 11 O -0.59 -25.24 15.26 -3.03 -0.05 -25.29 16 12 N -0.60 -21.61 2.97 -818.92 -2.43 -24.04 16 13 C 0.11 3.24 6.28 86.36 0.54 3.78 16 14 C -0.12 -4.25 5.30 30.67 0.16 -4.09 16 15 C 0.04 2.15 2.06 -11.51 -0.02 2.12 16 16 C -0.53 -28.48 8.56 25.60 0.22 -28.26 16 17 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 18 C 0.01 0.65 5.30 84.66 0.45 1.10 16 19 N -0.92 -52.56 11.31 21.45 0.24 -52.31 16 20 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 C -0.11 -5.29 5.15 30.67 0.16 -5.13 16 25 C 0.12 5.02 6.42 86.36 0.55 5.58 16 26 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.07 0.96 7.62 -2.39 -0.02 0.94 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 1.27 7.95 -2.39 -0.02 1.25 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.02 7.71 -2.39 -0.02 1.01 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 1.25 8.04 -2.39 -0.02 1.23 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.11 2.48 5.45 -2.39 -0.01 2.47 16 38 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 42 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 43 H 0.07 3.86 6.04 -2.39 -0.01 3.85 16 44 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.06 2.76 7.03 -2.39 -0.02 2.74 16 Total: -1.00 -65.29 349.33 4.79 -60.50 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.92 Total: 16.09 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 4.08 Total: -20.17 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -2.19 Total: -76.36 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.29 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -65.29 4.79 -60.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336202905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.082 kcal (2) G-P(sol) polarization free energy of solvation -65.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds