Wall clock time and date at job start Tue Mar 31 2020 02:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47222 * 2 1 4 4 H 1.08999 * 109.47470 * 54.99799 * 3 2 1 5 5 C 1.50700 * 109.47126 * 175.00344 * 3 2 1 6 6 H 1.08006 * 119.99964 * 119.99903 * 5 3 2 7 7 C 1.37870 * 120.00040 * 299.99718 * 5 3 2 8 8 N 1.31521 * 120.00406 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99984 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47105 * 89.99664 * 9 7 5 11 11 H 1.48501 * 109.47534 * 209.99769 * 9 7 5 12 12 H 1.48497 * 109.47327 * 330.00101 * 9 7 5 13 13 N 1.46508 * 109.47235 * 295.00066 * 3 2 1 14 14 C 1.34776 * 119.99673 * 85.00354 * 13 3 2 15 15 O 1.21276 * 120.00368 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99782 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.47097 * 179.97438 * 16 14 13 18 18 C 1.53781 * 113.61609 * 59.99374 * 17 16 14 19 19 C 1.53781 * 87.08070 * 139.98229 * 18 17 16 20 20 C 1.53786 * 87.17350 * 334.52830 * 19 18 17 21 21 C 1.52997 * 109.47506 * 59.99179 * 16 14 13 22 22 C 1.53779 * 113.61679 * 279.14039 * 21 16 14 23 23 C 1.53957 * 87.01813 * 220.04747 * 22 21 16 24 24 C 1.53780 * 113.61468 * 181.52885 * 21 16 14 25 25 H 1.09005 * 109.46617 * 299.99819 * 1 2 3 26 26 H 1.09001 * 109.47458 * 59.99527 * 1 2 3 27 27 H 1.08994 * 109.47557 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46617 * 240.00181 * 2 1 3 29 29 H 1.08996 * 109.47401 * 119.99992 * 2 1 3 30 30 H 0.96993 * 120.00027 * 180.02562 * 8 7 5 31 31 H 0.97000 * 119.99859 * 265.00122 * 13 3 2 32 32 H 1.09000 * 109.46867 * 299.99223 * 16 14 13 33 33 H 1.08996 * 112.84723 * 288.80194 * 17 16 14 34 34 H 1.08999 * 113.61181 * 25.43284 * 18 17 16 35 35 H 1.08998 * 113.61680 * 254.52836 * 18 17 16 36 36 H 1.09002 * 113.61445 * 89.11830 * 19 18 17 37 37 H 1.09002 * 113.61408 * 219.93560 * 19 18 17 38 38 H 1.08992 * 113.61675 * 140.02412 * 20 19 18 39 39 H 1.09000 * 113.60973 * 270.92699 * 20 19 18 40 40 H 1.09006 * 112.84935 * 50.33867 * 21 16 14 41 41 H 1.08997 * 113.61070 * 334.56737 * 22 21 16 42 42 H 1.08998 * 113.61558 * 105.46961 * 22 21 16 43 43 H 1.09003 * 113.53666 * 270.80564 * 23 22 21 44 44 H 1.08998 * 113.74355 * 139.94153 * 23 22 21 45 45 H 1.09003 * 113.61902 * 254.53223 * 24 21 16 46 46 H 1.08995 * 113.61399 * 25.43580 * 24 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1237 6 1 4.1472 1.8888 -0.6525 7 6 4.1433 0.8784 1.2278 8 7 5.4541 0.8803 1.3361 9 14 3.0965 0.1088 2.5700 10 1 2.8756 -1.3273 2.2632 11 1 3.7938 0.2347 3.8751 12 1 1.7878 0.8072 2.6386 13 7 1.6524 2.0975 -1.2519 14 6 0.4352 2.6645 -1.3669 15 8 -0.3395 2.6320 -0.4344 16 6 0.0363 3.3378 -2.6548 17 6 -1.3829 3.8937 -2.5213 18 6 -1.5353 4.9299 -1.3953 19 6 -2.4439 5.7198 -2.3521 20 6 -1.6937 5.0359 -3.5072 21 6 0.0798 2.3207 -3.7969 22 6 1.4928 2.0799 -4.3538 23 6 0.8492 2.0485 -5.7521 24 6 -0.2764 2.9186 -5.1682 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 5.8771 0.4819 2.1127 31 1 2.2719 2.1231 -1.9978 32 1 0.7276 4.1531 -2.8678 33 1 -2.1432 3.1129 -2.5019 34 1 -0.6075 5.4460 -1.1484 35 1 -2.0545 4.5469 -0.5167 36 1 -3.4951 5.4391 -2.2873 37 1 -2.2903 6.7981 -2.3095 38 1 -2.3405 4.7384 -4.3325 39 1 -0.8091 5.5810 -3.8367 40 1 -0.4612 1.4027 -3.5670 41 1 2.1703 2.9205 -4.2038 42 1 1.9254 1.1268 -4.0498 43 1 0.5197 1.0553 -6.0574 44 1 1.4384 2.5529 -6.5179 45 1 -1.2699 2.6416 -5.5207 46 1 -0.0834 3.9889 -5.2412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336785584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:33 Heat of formation + Delta-G solvation = -30.729015 kcal Electronic energy + Delta-G solvation = -23506.944274 eV Core-core repulsion = 20396.515038 eV Total energy + Delta-G solvation = -3110.429236 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.60536 -39.53509 -38.67735 -36.94574 -34.36545 -33.36127 -31.59951 -29.33745 -26.91710 -26.16337 -25.35994 -24.80086 -23.90995 -22.08569 -20.96082 -20.69495 -19.72260 -19.08655 -17.71828 -17.44369 -16.80762 -16.25713 -16.14231 -16.00005 -15.41094 -15.16764 -14.87471 -14.60710 -14.04620 -13.72138 -13.63367 -13.38056 -13.33563 -13.10872 -13.01822 -12.87192 -12.77562 -12.51116 -12.44669 -12.18193 -12.00623 -11.84966 -11.39872 -11.34350 -11.30847 -11.23534 -11.18121 -11.05723 -10.86809 -10.57306 -10.23411 -9.66596 -8.39313 -6.44113 1.24224 1.32453 1.42506 1.91946 2.24269 2.57838 2.96608 3.53267 3.70464 3.74489 3.89719 3.94361 4.06417 4.11197 4.16463 4.23527 4.30754 4.35462 4.42807 4.50729 4.63273 4.67715 4.85613 4.91602 4.92132 4.96223 4.96588 4.98879 5.00689 5.10325 5.13217 5.17230 5.18089 5.23340 5.24083 5.29220 5.41399 5.43110 5.49861 5.52407 5.68372 5.69805 5.74392 6.16334 6.57908 6.99406 7.20128 7.59249 8.76015 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019518 B = 0.005566 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.218063 B = 5029.253512 C = 5691.193270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.135 4.135 3 C 0.250 3.750 4 H 0.018 0.982 5 C -0.531 4.531 6 H 0.054 0.946 7 C 0.031 3.969 8 N -0.934 5.934 9 Si 0.936 3.064 10 H -0.260 1.260 11 H -0.293 1.293 12 H -0.263 1.263 13 N -0.703 5.703 14 C 0.504 3.496 15 O -0.577 6.577 16 C -0.079 4.079 17 C -0.083 4.083 18 C -0.135 4.135 19 C -0.138 4.138 20 C -0.116 4.116 21 C -0.101 4.101 22 C -0.152 4.152 23 C -0.134 4.134 24 C -0.116 4.116 25 H 0.034 0.966 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.270 0.730 31 H 0.401 0.599 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.044 0.956 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.093 5.304 -14.879 21.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.174 4.174 3 C 0.144 3.856 4 H 0.036 0.964 5 C -0.570 4.570 6 H 0.072 0.928 7 C -0.169 4.169 8 N -0.573 5.573 9 Si 0.763 3.237 10 H -0.186 1.186 11 H -0.220 1.220 12 H -0.187 1.187 13 N -0.353 5.353 14 C 0.292 3.708 15 O -0.458 6.458 16 C -0.100 4.100 17 C -0.102 4.102 18 C -0.173 4.173 19 C -0.176 4.176 20 C -0.153 4.153 21 C -0.120 4.120 22 C -0.190 4.190 23 C -0.171 4.171 24 C -0.153 4.153 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.237 0.763 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.473 5.227 -14.106 20.875 hybrid contribution 0.628 -0.622 1.103 1.414 sum -13.845 4.605 -13.003 19.544 Atomic orbital electron populations 1.21738 0.95192 1.00326 1.01588 1.22179 0.95844 0.98622 1.00719 1.18727 0.92998 0.89574 0.84269 0.96382 1.21305 0.90492 1.38365 1.06797 0.92772 1.25525 0.95693 0.95908 0.99774 1.69976 1.10199 1.46241 1.30859 0.86045 0.79262 0.79914 0.78439 1.18621 1.22029 1.18749 1.46131 1.16188 1.56407 1.16547 1.21253 0.81132 0.78087 0.90320 1.90627 1.52180 1.60682 1.42271 1.21423 0.98812 0.98469 0.91308 1.22274 0.94184 0.96283 0.97426 1.22796 0.99577 0.97719 0.97176 1.22847 0.98842 0.99602 0.96271 1.22984 1.00678 0.95381 0.96282 1.22472 0.98290 0.97637 0.93564 1.23153 0.96005 1.02063 0.97776 1.22792 0.97885 1.00681 0.95779 1.22902 0.99141 1.00290 0.92999 0.94634 0.92562 0.92517 0.91586 0.94072 0.92117 0.76336 0.88060 0.90089 0.92014 0.93715 0.89879 0.90849 0.89684 0.89245 0.90263 0.89619 0.92379 0.90118 0.90370 0.90520 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 8.51 71.98 0.61 -4.57 16 2 C -0.14 -5.97 5.11 30.59 0.16 -5.81 16 3 C 0.25 12.00 1.83 44.24 0.08 12.08 16 4 H 0.02 0.99 6.64 -2.39 -0.02 0.97 16 5 C -0.53 -29.46 9.31 25.60 0.24 -29.22 16 6 H 0.05 3.20 7.98 -2.91 -0.02 3.17 16 7 C 0.03 1.76 5.45 84.65 0.46 2.22 16 8 N -0.93 -56.63 13.96 21.45 0.30 -56.33 16 9 Si 0.94 45.77 24.41 68.60 1.67 47.44 16 10 H -0.26 -12.00 6.83 99.48 0.68 -11.32 16 11 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 12 H -0.26 -12.86 6.53 99.48 0.65 -12.21 16 13 N -0.70 -27.87 4.90 -446.09 -2.19 -30.05 16 14 C 0.50 18.31 5.53 87.66 0.48 18.80 16 15 O -0.58 -24.69 11.98 -3.02 -0.04 -24.73 16 16 C -0.08 -2.02 1.79 -11.54 -0.02 -2.05 16 17 C -0.08 -1.96 2.59 -10.18 -0.03 -1.98 16 18 C -0.13 -3.59 6.19 31.12 0.19 -3.40 16 19 C -0.14 -2.60 8.07 31.12 0.25 -2.35 16 20 C -0.12 -1.92 5.79 31.21 0.18 -1.74 16 21 C -0.10 -2.16 3.06 -10.27 -0.03 -2.19 16 22 C -0.15 -3.19 5.93 31.18 0.18 -3.01 16 23 C -0.13 -2.14 8.09 31.18 0.25 -1.89 16 24 C -0.12 -1.76 6.36 31.12 0.20 -1.57 16 25 H 0.03 1.50 7.85 -2.38 -0.02 1.48 16 26 H 0.06 2.17 5.64 -2.39 -0.01 2.16 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 29 H 0.04 1.90 3.21 -2.39 -0.01 1.90 16 30 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.40 14.47 6.75 -92.71 -0.63 13.85 16 32 H 0.10 2.40 7.78 -2.39 -0.02 2.38 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 1.76 8.10 -2.39 -0.02 1.74 16 35 H 0.04 1.40 7.96 -2.39 -0.02 1.38 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.09 1.32 7.68 -2.39 -0.02 1.31 16 40 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.09 1.75 7.99 -2.39 -0.02 1.73 16 42 H 0.06 1.39 8.09 -2.39 -0.02 1.37 16 43 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.09 1.25 6.99 -2.39 -0.02 1.24 16 Total: -1.00 -65.59 341.72 3.20 -62.39 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.24 Total: 27.94 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 3.22 Total: -26.66 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -1.89 Total: -86.39 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.04 Total: -24.73 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.67 Total: 47.44 kcal Total: -65.59 3.20 -62.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336785584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.662 kcal (2) G-P(sol) polarization free energy of solvation -65.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds