Wall clock time and date at job start Tue Mar 31 2020 00:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47267 * 2 1 4 4 C 1.53004 * 109.46966 * 120.00492 * 2 1 3 5 5 C 1.53000 * 109.47279 * 59.99911 * 4 2 1 6 6 C 1.52996 * 109.46876 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.47623 * 299.99863 * 6 5 4 8 8 C 1.50702 * 109.46677 * 300.00294 * 7 6 5 9 9 O 1.21293 * 119.99770 * 119.99719 * 8 7 6 10 10 N 1.34774 * 120.00121 * 299.99171 * 8 7 6 11 11 C 1.37098 * 120.00069 * 179.97438 * 10 8 7 12 12 H 1.07996 * 120.00299 * 224.22102 * 11 10 8 13 13 C 1.38949 * 119.99387 * 44.22983 * 11 10 8 14 14 N 1.31408 * 120.00724 * 18.04098 * 13 11 10 15 15 Si 1.86810 * 119.99717 * 198.04601 * 13 11 10 16 16 H 1.48502 * 109.46789 * 59.99836 * 15 13 11 17 17 H 1.48493 * 109.47016 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46693 * 299.99928 * 15 13 11 19 19 C 1.46506 * 119.99946 * 0.02562 * 10 8 7 20 20 C 1.53000 * 117.49480 * 189.17318 * 19 10 8 21 21 C 1.52997 * 117.49752 * 120.55138 * 19 10 8 22 22 C 1.52996 * 109.46955 * 59.99790 * 7 6 5 23 23 C 1.53000 * 109.46767 * 179.97438 * 4 2 1 24 24 H 1.09002 * 109.46971 * 299.99809 * 1 2 3 25 25 H 1.09004 * 109.47053 * 59.99826 * 1 2 3 26 26 H 1.09001 * 109.46940 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46971 * 240.00191 * 2 1 3 28 28 H 1.09002 * 109.46969 * 60.00190 * 3 2 1 29 29 H 1.09008 * 109.46925 * 179.97438 * 3 2 1 30 30 H 1.08990 * 109.47338 * 300.00255 * 3 2 1 31 31 H 1.08992 * 109.46936 * 299.99795 * 4 2 1 32 32 H 1.08995 * 109.47132 * 300.00145 * 5 4 2 33 33 H 1.09002 * 109.47291 * 59.99912 * 5 4 2 34 34 H 1.09002 * 109.47079 * 59.99969 * 6 5 4 35 35 H 1.09007 * 109.46889 * 179.97438 * 6 5 4 36 36 H 1.08990 * 109.47453 * 180.02562 * 7 6 5 37 37 H 0.96997 * 120.00693 * 174.91539 * 14 13 11 38 38 H 1.08999 * 115.54754 * 334.88046 * 19 10 8 39 39 H 1.08993 * 117.50244 * 359.97438 * 20 19 10 40 40 H 1.09007 * 117.49362 * 145.02078 * 20 19 10 41 41 H 1.08997 * 117.49708 * 214.97562 * 21 19 10 42 42 H 1.08998 * 117.50098 * 359.97400 * 21 19 10 43 43 H 1.08995 * 109.47204 * 179.97438 * 22 7 6 44 44 H 1.09002 * 109.46969 * 60.00370 * 22 7 6 45 45 H 1.08992 * 109.47500 * 299.99786 * 23 4 2 46 46 H 1.09000 * 109.47486 * 60.00226 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5300 -2.1639 1.2491 6 6 2.0405 -2.8853 2.4980 7 6 3.5705 -2.8854 2.4974 8 6 4.0723 -3.5956 1.2666 9 8 4.7693 -3.0060 0.4680 10 7 3.7466 -4.8859 1.0532 11 6 4.2026 -5.5318 -0.0668 12 1 3.5336 -6.1565 -0.6399 13 6 5.5257 -5.3827 -0.4643 14 7 6.4210 -4.9344 0.3867 15 14 6.0316 -5.8195 -2.2087 16 1 5.2715 -4.9801 -3.1694 17 1 7.4859 -5.5723 -2.3789 18 1 5.7393 -7.2529 -2.4646 19 6 2.9044 -5.5979 2.0176 20 6 2.7458 -7.1089 1.8366 21 6 1.5805 -6.1728 1.5101 22 6 4.0805 -1.4430 2.4974 23 6 3.5700 -0.7219 1.2489 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 -0.2076 2.1392 32 1 0.4400 -2.1639 1.2491 33 1 1.8933 -2.6777 0.3591 34 1 1.6775 -2.3716 3.3882 35 1 1.6767 -3.9129 2.4982 36 1 3.9342 -3.3997 3.3869 37 1 7.3567 -4.8999 0.1331 38 1 2.9279 -5.2124 3.0369 39 1 3.2677 -7.5731 1.0000 40 1 2.6651 -7.7178 2.7372 41 1 0.7331 -6.1660 2.1956 42 1 1.3359 -6.0209 0.4588 43 1 5.1705 -1.4430 2.4975 44 1 3.7176 -0.9293 3.3877 45 1 3.9330 -1.2359 0.3589 46 1 3.9337 0.3056 1.2487 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337911820.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:36 Heat of formation + Delta-G solvation = -23.615485 kcal Electronic energy + Delta-G solvation = -24103.820040 eV Core-core repulsion = 20993.699270 eV Total energy + Delta-G solvation = -3110.120770 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -39.74103 -37.64931 -36.00333 -34.32641 -32.62438 -31.01372 -30.12364 -29.11861 -26.94812 -25.10436 -22.97387 -21.97706 -21.65684 -21.21142 -20.22435 -19.40100 -18.53895 -16.08946 -15.83574 -15.50082 -14.69864 -14.37610 -14.13343 -13.92655 -13.77524 -13.43511 -12.97572 -12.88604 -12.79517 -12.34930 -12.09565 -11.90402 -11.85458 -11.35875 -11.16573 -11.03874 -10.87968 -10.87099 -10.76260 -10.73316 -10.52092 -10.47914 -10.30637 -10.15830 -9.94477 -9.77791 -9.66643 -9.37829 -9.21826 -8.61673 -7.75175 -6.88913 -6.05012 -3.79869 3.32587 3.39537 3.42843 4.21986 4.32427 4.83808 4.89615 5.04063 5.10122 5.17718 5.30825 5.38826 5.52938 5.60837 5.63683 5.73253 5.75954 5.80980 5.85692 5.92332 5.92708 5.98946 6.04046 6.12343 6.14672 6.18085 6.21225 6.26141 6.29761 6.37316 6.40728 6.44863 6.54525 6.62502 6.64749 6.80660 6.81533 6.84315 6.93533 6.98927 7.00026 7.32677 7.67375 8.34911 9.15736 9.26727 9.76299 10.42360 11.04038 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.006934 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.876941 B = 4037.205176 C = 4675.909140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.075 4.075 5 C -0.112 4.112 6 C -0.116 4.116 7 C -0.106 4.106 8 C 0.498 3.502 9 O -0.527 6.527 10 N -0.429 5.429 11 C -0.348 4.348 12 H 0.074 0.926 13 C 0.075 3.925 14 N -0.835 5.835 15 Si 0.909 3.091 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.279 1.279 19 C 0.081 3.919 20 C -0.180 4.180 21 C -0.208 4.208 22 C -0.089 4.089 23 C -0.126 4.126 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.263 0.737 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.100 0.900 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.937 5.631 4.380 12.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.094 4.094 5 C -0.149 4.149 6 C -0.154 4.154 7 C -0.128 4.128 8 C 0.286 3.714 9 O -0.405 6.405 10 N -0.150 5.150 11 C -0.475 4.475 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.468 5.468 15 Si 0.737 3.263 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.205 1.205 19 C -0.026 4.026 20 C -0.218 4.218 21 C -0.247 4.247 22 C -0.127 4.127 23 C -0.163 4.163 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.118 0.882 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.345 6.072 3.958 11.826 hybrid contribution 0.327 -0.403 -0.609 0.801 sum -9.018 5.669 3.349 11.165 Atomic orbital electron populations 1.21881 0.95943 1.01662 1.00845 1.21140 0.95032 0.95909 0.99135 1.21869 1.01513 0.96182 1.00757 1.21147 0.96350 0.95369 0.96500 1.21577 0.99057 0.95274 0.99008 1.21720 0.94423 1.01496 0.97722 1.21266 0.95911 0.96924 0.98723 1.19615 0.83014 0.81481 0.87276 1.90431 1.37847 1.64684 1.47534 1.42766 1.45527 1.07491 1.19191 1.18757 0.94002 1.32080 1.02630 0.90876 1.25196 0.95654 0.94856 0.97810 1.69811 1.01316 1.41148 1.34529 0.86328 0.77421 0.78106 0.84452 1.20042 1.21290 1.20505 1.21701 0.94098 0.93160 0.93616 1.23112 1.01979 0.93521 1.03176 1.23296 0.92398 1.07055 1.01943 1.21172 1.00594 0.93779 0.97131 1.21870 0.93837 0.99405 1.01229 0.93184 0.93406 0.92391 0.91163 0.93229 0.92224 0.93434 0.92477 0.92690 0.91260 0.92798 0.90494 0.90998 0.92690 0.87869 0.87579 0.90046 0.89981 0.89142 0.91919 0.93409 0.88193 0.93355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.84 37.16 0.33 -1.43 16 2 C -0.09 -1.31 2.51 -90.62 -0.23 -1.54 16 3 C -0.15 -1.83 8.84 37.16 0.33 -1.50 16 4 C -0.08 -1.15 1.78 -90.62 -0.16 -1.31 16 5 C -0.11 -1.82 4.63 -26.73 -0.12 -1.95 16 6 C -0.12 -1.88 5.07 -26.73 -0.14 -2.02 16 7 C -0.11 -2.06 2.22 -91.77 -0.20 -2.26 16 8 C 0.50 12.20 4.85 -10.99 -0.05 12.15 16 9 O -0.53 -14.87 11.40 5.55 0.06 -14.81 16 10 N -0.43 -10.52 2.85 -107.73 -0.31 -10.83 16 11 C -0.35 -9.42 7.72 -14.93 -0.12 -9.53 16 12 H 0.07 1.94 7.53 -52.49 -0.40 1.54 16 13 C 0.08 2.11 4.39 -17.47 -0.08 2.03 16 14 N -0.83 -24.71 11.72 55.50 0.65 -24.06 16 15 Si 0.91 22.08 29.59 -169.99 -5.03 17.05 16 16 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.08 1.60 4.32 -67.93 -0.29 1.31 16 20 C -0.18 -3.29 9.82 -26.73 -0.26 -3.55 16 21 C -0.21 -3.55 9.47 -26.73 -0.25 -3.80 16 22 C -0.09 -1.62 5.09 -26.76 -0.14 -1.75 16 23 C -0.13 -2.25 4.55 -26.75 -0.12 -2.38 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.71 6.43 -51.93 -0.33 0.37 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.79 6.43 -51.92 -0.33 0.45 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.79 6.43 -51.93 -0.33 0.45 16 33 H 0.07 1.37 7.22 -51.93 -0.37 1.00 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.24 4.43 -51.93 -0.23 1.01 16 36 H 0.07 1.36 7.57 -51.93 -0.39 0.97 16 37 H 0.26 7.52 8.32 -40.82 -0.34 7.18 16 38 H 0.10 1.87 6.13 -51.93 -0.32 1.55 16 39 H 0.11 2.17 6.91 -51.93 -0.36 1.81 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 43 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.10 2.20 5.51 -51.93 -0.29 1.91 16 46 H 0.05 0.79 6.43 -51.93 -0.33 0.45 16 LS Contribution 337.98 15.07 5.09 5.09 Total: -1.00 -30.55 337.98 -8.93 -39.48 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -7.90 Total: 5.60 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -1.51 Total: -17.53 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.34 Total: -34.89 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.06 Total: -14.81 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.55 -8.93 -39.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337911820.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.868 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds