Wall clock time and date at job start Tue Mar 31 2020 00:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47267 * 2 1 4 4 C 1.53004 * 109.46966 * 120.00492 * 2 1 3 5 5 C 1.53000 * 109.47279 * 59.99911 * 4 2 1 6 6 C 1.52996 * 109.46876 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.47623 * 299.99863 * 6 5 4 8 8 C 1.50702 * 109.46677 * 300.00294 * 7 6 5 9 9 O 1.21293 * 119.99770 * 119.99719 * 8 7 6 10 10 N 1.34774 * 120.00121 * 299.99171 * 8 7 6 11 11 C 1.37098 * 120.00069 * 179.97438 * 10 8 7 12 12 H 1.07996 * 120.00299 * 224.22102 * 11 10 8 13 13 C 1.38949 * 119.99387 * 44.22983 * 11 10 8 14 14 N 1.31408 * 120.00724 * 18.04098 * 13 11 10 15 15 Si 1.86810 * 119.99717 * 198.04601 * 13 11 10 16 16 H 1.48502 * 109.46789 * 59.99836 * 15 13 11 17 17 H 1.48493 * 109.47016 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46693 * 299.99928 * 15 13 11 19 19 C 1.46506 * 119.99946 * 0.02562 * 10 8 7 20 20 C 1.53000 * 117.49480 * 189.17318 * 19 10 8 21 21 C 1.52997 * 117.49752 * 120.55138 * 19 10 8 22 22 C 1.52996 * 109.46955 * 59.99790 * 7 6 5 23 23 C 1.53000 * 109.46767 * 179.97438 * 4 2 1 24 24 H 1.09002 * 109.46971 * 299.99809 * 1 2 3 25 25 H 1.09004 * 109.47053 * 59.99826 * 1 2 3 26 26 H 1.09001 * 109.46940 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46971 * 240.00191 * 2 1 3 28 28 H 1.09002 * 109.46969 * 60.00190 * 3 2 1 29 29 H 1.09008 * 109.46925 * 179.97438 * 3 2 1 30 30 H 1.08990 * 109.47338 * 300.00255 * 3 2 1 31 31 H 1.08992 * 109.46936 * 299.99795 * 4 2 1 32 32 H 1.08995 * 109.47132 * 300.00145 * 5 4 2 33 33 H 1.09002 * 109.47291 * 59.99912 * 5 4 2 34 34 H 1.09002 * 109.47079 * 59.99969 * 6 5 4 35 35 H 1.09007 * 109.46889 * 179.97438 * 6 5 4 36 36 H 1.08990 * 109.47453 * 180.02562 * 7 6 5 37 37 H 0.96997 * 120.00693 * 174.91539 * 14 13 11 38 38 H 1.08999 * 115.54754 * 334.88046 * 19 10 8 39 39 H 1.08993 * 117.50244 * 359.97438 * 20 19 10 40 40 H 1.09007 * 117.49362 * 145.02078 * 20 19 10 41 41 H 1.08997 * 117.49708 * 214.97562 * 21 19 10 42 42 H 1.08998 * 117.50098 * 359.97400 * 21 19 10 43 43 H 1.08995 * 109.47204 * 179.97438 * 22 7 6 44 44 H 1.09002 * 109.46969 * 60.00370 * 22 7 6 45 45 H 1.08992 * 109.47500 * 299.99786 * 23 4 2 46 46 H 1.09000 * 109.47486 * 60.00226 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5300 -2.1639 1.2491 6 6 2.0405 -2.8853 2.4980 7 6 3.5705 -2.8854 2.4974 8 6 4.0723 -3.5956 1.2666 9 8 4.7693 -3.0060 0.4680 10 7 3.7466 -4.8859 1.0532 11 6 4.2026 -5.5318 -0.0668 12 1 3.5336 -6.1565 -0.6399 13 6 5.5257 -5.3827 -0.4643 14 7 6.4210 -4.9344 0.3867 15 14 6.0316 -5.8195 -2.2087 16 1 5.2715 -4.9801 -3.1694 17 1 7.4859 -5.5723 -2.3789 18 1 5.7393 -7.2529 -2.4646 19 6 2.9044 -5.5979 2.0176 20 6 2.7458 -7.1089 1.8366 21 6 1.5805 -6.1728 1.5101 22 6 4.0805 -1.4430 2.4974 23 6 3.5700 -0.7219 1.2489 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 -0.2076 2.1392 32 1 0.4400 -2.1639 1.2491 33 1 1.8933 -2.6777 0.3591 34 1 1.6775 -2.3716 3.3882 35 1 1.6767 -3.9129 2.4982 36 1 3.9342 -3.3997 3.3869 37 1 7.3567 -4.8999 0.1331 38 1 2.9279 -5.2124 3.0369 39 1 3.2677 -7.5731 1.0000 40 1 2.6651 -7.7178 2.7372 41 1 0.7331 -6.1660 2.1956 42 1 1.3359 -6.0209 0.4588 43 1 5.1705 -1.4430 2.4975 44 1 3.7176 -0.9293 3.3877 45 1 3.9330 -1.2359 0.3589 46 1 3.9337 0.3056 1.2487 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337911820.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:32 Heat of formation + Delta-G solvation = -40.007523 kcal Electronic energy + Delta-G solvation = -24104.530852 eV Core-core repulsion = 20993.699270 eV Total energy + Delta-G solvation = -3110.831582 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 3.57 seconds Orbital eigenvalues (eV) -41.31860 -39.12294 -37.63998 -35.73929 -34.54535 -32.84207 -31.56015 -30.51107 -27.95812 -27.04338 -24.44015 -23.37736 -23.11602 -22.70186 -21.82307 -20.59382 -20.26895 -17.96138 -17.50338 -16.91838 -16.63237 -15.89083 -15.58733 -15.50998 -15.08378 -14.87400 -14.38719 -14.25977 -14.19120 -13.95894 -13.56448 -13.17187 -13.07222 -12.97985 -12.82637 -12.77541 -12.51326 -12.40570 -12.22829 -12.12033 -11.99484 -11.88250 -11.72323 -11.65695 -11.52914 -11.21764 -11.12970 -10.69960 -10.67382 -10.54736 -9.62407 -8.82525 -8.16468 -5.93105 1.32537 1.41135 1.44031 2.29668 2.52588 3.13304 3.20018 3.43089 3.82757 3.85606 3.94615 4.09347 4.15471 4.26310 4.28237 4.31251 4.44022 4.49180 4.58783 4.61040 4.76488 4.77854 4.80180 4.85802 4.88801 4.91868 4.96084 5.05871 5.07022 5.11849 5.17127 5.18869 5.23727 5.33058 5.42458 5.45428 5.46378 5.50925 5.51242 5.52242 5.62633 5.65425 5.88375 6.24922 7.10960 7.32467 7.82368 8.51954 8.91933 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.006934 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.876941 B = 4037.205176 C = 4675.909140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 C -0.142 4.142 4 C -0.068 4.068 5 C -0.107 4.107 6 C -0.109 4.109 7 C -0.101 4.101 8 C 0.486 3.514 9 O -0.578 6.578 10 N -0.447 5.447 11 C -0.351 4.351 12 H 0.070 0.930 13 C 0.024 3.976 14 N -0.873 5.873 15 Si 0.963 3.037 16 H -0.284 1.284 17 H -0.289 1.289 18 H -0.257 1.257 19 C 0.053 3.947 20 C -0.180 4.180 21 C -0.178 4.178 22 C -0.087 4.087 23 C -0.122 4.122 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.021 0.979 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.257 0.743 38 H 0.127 0.873 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.125 0.875 42 H 0.071 0.929 43 H 0.029 0.971 44 H 0.088 0.912 45 H 0.049 0.951 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.051 6.147 6.398 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 C -0.200 4.200 4 C -0.086 4.086 5 C -0.145 4.145 6 C -0.146 4.146 7 C -0.123 4.123 8 C 0.276 3.724 9 O -0.459 6.459 10 N -0.168 5.168 11 C -0.479 4.479 12 H 0.088 0.912 13 C -0.182 4.182 14 N -0.509 5.509 15 Si 0.788 3.212 16 H -0.210 1.210 17 H -0.214 1.214 18 H -0.182 1.182 19 C -0.052 4.052 20 C -0.218 4.218 21 C -0.217 4.217 22 C -0.125 4.125 23 C -0.159 4.159 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.040 0.960 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.144 0.856 39 H 0.094 0.906 40 H 0.133 0.867 41 H 0.143 0.857 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.106 0.894 45 H 0.067 0.933 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.493 6.545 5.982 15.320 hybrid contribution 1.242 -0.569 -1.256 1.856 sum -11.250 5.976 4.727 13.588 Atomic orbital electron populations 1.21827 0.93782 1.01858 1.02266 1.21125 0.96804 0.96331 0.97145 1.21833 1.00539 0.95356 1.02235 1.21112 0.94016 0.95276 0.98196 1.21538 1.00506 0.95343 0.97105 1.21726 0.91457 1.02374 0.99076 1.21269 0.98446 0.96713 0.95873 1.20575 0.81985 0.81491 0.88350 1.90411 1.39956 1.65855 1.49652 1.42980 1.46096 1.08034 1.19657 1.18954 0.93759 1.31210 1.03950 0.91204 1.25947 0.96014 0.95323 1.00917 1.69926 1.01112 1.43728 1.36110 0.85489 0.76645 0.78758 0.80275 1.21049 1.21438 1.18197 1.21983 0.95369 0.94028 0.93792 1.23154 1.02262 0.92819 1.03573 1.23289 0.92433 1.04217 1.01715 1.21192 0.98726 0.93749 0.98854 1.21741 0.96125 0.99182 0.98881 0.91222 0.92550 0.92780 0.94625 0.91271 0.93768 0.92421 0.89592 0.89987 0.96030 0.88900 0.90109 0.90359 0.93434 0.85603 0.90579 0.86666 0.85658 0.91076 0.95185 0.89403 0.93285 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.84 71.98 0.64 -2.33 16 2 C -0.10 -2.57 2.51 -10.79 -0.03 -2.60 16 3 C -0.14 -3.33 8.84 71.98 0.64 -2.69 16 4 C -0.07 -1.94 1.78 -10.79 -0.02 -1.96 16 5 C -0.11 -3.31 4.63 30.59 0.14 -3.17 16 6 C -0.11 -3.20 5.07 30.59 0.16 -3.04 16 7 C -0.10 -3.84 2.22 -11.54 -0.03 -3.87 16 8 C 0.49 24.62 4.85 87.66 0.43 25.04 16 9 O -0.58 -34.70 11.40 -3.07 -0.04 -34.73 16 10 N -0.45 -22.43 2.85 -613.13 -1.75 -24.18 16 11 C -0.35 -19.72 7.72 84.04 0.65 -19.07 16 12 H 0.07 3.84 7.53 -2.91 -0.02 3.82 16 13 C 0.02 1.39 4.39 84.93 0.37 1.76 16 14 N -0.87 -54.32 11.72 21.66 0.25 -54.07 16 15 Si 0.96 47.23 29.59 68.60 2.03 49.26 16 16 H -0.28 -14.21 7.11 99.48 0.71 -13.50 16 17 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 18 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 19 C 0.05 2.05 4.32 44.99 0.19 2.25 16 20 C -0.18 -6.28 9.82 30.59 0.30 -5.98 16 21 C -0.18 -5.61 9.47 30.59 0.29 -5.32 16 22 C -0.09 -3.13 5.09 30.58 0.16 -2.98 16 23 C -0.12 -4.39 4.55 30.58 0.14 -4.25 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.05 1.18 6.43 -2.39 -0.02 1.16 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.04 1.15 6.43 -2.38 -0.02 1.13 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.08 2.08 6.43 -2.39 -0.02 2.06 16 33 H 0.02 0.86 7.22 -2.39 -0.02 0.84 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.08 2.31 4.43 -2.38 -0.01 2.30 16 36 H 0.08 2.85 7.57 -2.39 -0.02 2.83 16 37 H 0.26 15.51 8.32 -92.71 -0.77 14.74 16 38 H 0.13 4.22 6.13 -2.39 -0.01 4.20 16 39 H 0.08 3.12 6.91 -2.39 -0.02 3.11 16 40 H 0.12 3.21 8.14 -2.38 -0.02 3.19 16 41 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 42 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.03 1.24 8.10 -2.39 -0.02 1.22 16 44 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.05 2.31 5.51 -2.39 -0.01 2.29 16 46 H 0.06 1.95 6.43 -2.39 -0.02 1.93 16 Total: -1.00 -72.44 337.98 5.47 -66.97 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.94 Total: 24.97 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 4.02 Total: -28.22 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -1.49 Total: -78.25 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.04 Total: -34.73 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -72.44 5.47 -66.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337911820.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.963 kcal (2) G-P(sol) polarization free energy of solvation -72.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.57 seconds