Wall clock time and date at job start Tue Mar 31 2020 01:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 5 5 C 1.50698 * 109.47184 * 299.99369 * 4 2 1 6 6 O 1.21282 * 120.00025 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00035 * 179.97438 * 5 4 2 8 8 C 1.46496 * 119.99846 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47212 * 90.00427 * 8 7 5 10 10 H 1.07999 * 119.99752 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00202 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99568 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99968 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47013 * 60.00505 * 13 11 9 15 15 H 1.48503 * 109.47021 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47718 * 300.00216 * 13 11 9 17 17 C 1.46497 * 119.99801 * 0.02562 * 7 5 4 18 18 C 1.52995 * 109.47580 * 89.99777 * 17 7 5 19 19 C 1.53002 * 117.50065 * 243.62335 * 18 17 7 20 20 C 1.52994 * 117.50530 * 174.99788 * 18 17 7 21 21 C 1.52997 * 109.46991 * 239.99657 * 2 1 3 22 22 C 1.52998 * 117.49757 * 128.75336 * 21 2 1 23 23 C 1.53003 * 117.49978 * 60.09150 * 21 2 1 24 24 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 25 25 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 26 26 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 29 29 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 30 30 H 1.09001 * 109.46801 * 59.99811 * 4 2 1 31 31 H 1.09001 * 109.46998 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.46870 * 210.00004 * 8 7 5 33 33 H 1.08996 * 109.47490 * 330.00312 * 8 7 5 34 34 H 0.97001 * 119.99819 * 179.97438 * 12 11 9 35 35 H 1.09010 * 109.46976 * 209.99920 * 17 7 5 36 36 H 1.09007 * 109.47283 * 329.99472 * 17 7 5 37 37 H 1.09001 * 115.54767 * 29.32789 * 18 17 7 38 38 H 1.08999 * 117.49473 * 359.97438 * 19 18 17 39 39 H 1.09000 * 117.49943 * 145.02056 * 19 18 17 40 40 H 1.08996 * 117.50588 * 214.98097 * 20 18 17 41 41 H 1.09007 * 117.49835 * 0.02562 * 20 18 17 42 42 H 1.09001 * 115.55272 * 274.42036 * 21 2 1 43 43 H 1.09004 * 117.50171 * 359.97438 * 22 21 2 44 44 H 1.09001 * 117.50114 * 145.02267 * 22 21 2 45 45 H 1.08997 * 117.49922 * 214.97679 * 23 21 2 46 46 H 1.08998 * 117.49430 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.5376 -0.0108 2.4797 6 8 0.8401 0.9751 2.3684 7 7 1.8627 -0.4716 3.7039 8 6 1.3740 0.2188 4.8999 9 6 0.0463 -0.3647 5.3095 10 1 -0.3900 -1.1691 4.7359 11 6 -0.6115 0.1283 6.4165 12 7 -0.0798 1.1075 7.1152 13 14 -2.2575 -0.5946 6.9237 14 1 -2.0933 -2.0407 7.2186 15 1 -2.7529 0.1052 8.1363 16 1 -3.2352 -0.4225 5.8194 17 6 2.7048 -1.6628 3.8383 18 6 4.1758 -1.2449 3.8857 19 6 5.0825 -1.7210 2.7489 20 6 5.2134 -2.3396 4.1421 21 6 2.0399 -0.7213 -1.2492 22 6 3.0763 0.0038 -2.1100 23 6 1.6374 -0.1484 -2.6096 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6764 -1.7489 1.2493 31 1 3.1299 -0.7217 1.2492 32 1 2.0917 0.0931 5.7107 33 1 1.2530 1.2801 4.6830 34 1 -0.5427 1.4546 7.8938 35 1 2.4466 -2.1884 4.7577 36 1 2.5415 -2.3214 2.9852 37 1 4.3709 -0.2582 4.3058 38 1 4.6310 -2.3323 1.9675 39 1 5.8743 -1.0475 2.4209 40 1 6.0913 -2.0732 4.7307 41 1 4.8481 -3.3578 4.2767 42 1 2.1252 -1.8047 -1.1647 43 1 3.3946 0.9949 -1.7866 44 1 3.8432 -0.6026 -2.5921 45 1 1.4582 -0.8548 -3.4201 46 1 1.0089 0.7421 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339932994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:07 Heat of formation + Delta-G solvation = 4.661312 kcal Electronic energy + Delta-G solvation = -23081.502127 eV Core-core repulsion = 19972.607531 eV Total energy + Delta-G solvation = -3108.894596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.89394 -38.20292 -37.08141 -34.53473 -33.17573 -32.49473 -28.64894 -27.28515 -27.01219 -25.73005 -23.55020 -22.28242 -22.25139 -22.16851 -20.62953 -18.57046 -17.93118 -16.66825 -16.43472 -15.84094 -15.19758 -15.04146 -14.80670 -14.34042 -14.08477 -13.86781 -13.36712 -13.15621 -12.77277 -12.41548 -12.28903 -11.93231 -11.65817 -11.48595 -11.42628 -11.37467 -11.19386 -10.99013 -10.87942 -10.71688 -10.69786 -10.55958 -10.46473 -10.29405 -10.13152 -10.04420 -9.77413 -9.70418 -9.57449 -8.55148 -8.40648 -7.59580 -6.01741 -4.06199 3.33088 3.37595 3.39834 3.51101 3.80044 3.87642 4.07080 4.46676 4.71412 4.92049 4.93500 4.98678 5.05534 5.06684 5.18960 5.32258 5.36521 5.42944 5.52959 5.59705 5.63243 5.70123 5.72753 5.87135 5.89442 5.90381 5.98282 6.04794 6.09350 6.12518 6.14581 6.16709 6.19568 6.34601 6.44173 6.46683 6.54923 6.85612 6.94096 7.12647 7.49034 7.61852 7.95228 8.27061 8.50174 8.94076 9.19527 9.58978 11.06210 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014924 B = 0.005588 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.740918 B = 5009.747633 C = 6320.921199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.013 4.013 3 C -0.154 4.154 4 C -0.130 4.130 5 C 0.510 3.490 6 O -0.533 6.533 7 N -0.596 5.596 8 C 0.247 3.753 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.062 3.938 12 N -0.895 5.895 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.143 3.857 18 C -0.163 4.163 19 C -0.184 4.184 20 C -0.178 4.178 21 C -0.139 4.139 22 C -0.186 4.186 23 C -0.179 4.179 24 H 0.091 0.909 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.286 -6.159 -13.835 17.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 C -0.211 4.211 4 C -0.170 4.170 5 C 0.297 3.703 6 O -0.412 6.412 7 N -0.327 5.327 8 C 0.127 3.873 9 C -0.563 4.563 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.534 5.534 13 Si 0.724 3.276 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 C 0.018 3.982 18 C -0.183 4.183 19 C -0.221 4.221 20 C -0.215 4.215 21 C -0.158 4.158 22 C -0.223 4.223 23 C -0.216 4.216 24 H 0.110 0.890 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.868 -5.508 -13.697 17.221 hybrid contribution -0.748 -0.593 0.348 1.016 sum 8.119 -6.100 -13.349 16.773 Atomic orbital electron populations 1.22080 0.93891 1.01281 1.03474 1.19726 0.96048 0.94809 0.90720 1.22204 0.99708 0.95735 1.03435 1.21789 1.02026 0.99929 0.93278 1.20299 0.80667 0.84917 0.84396 1.90525 1.37946 1.26885 1.85829 1.48206 1.48872 1.28090 1.07499 1.19244 0.93995 0.93637 0.80379 1.21396 1.04853 1.19011 1.11077 0.92605 1.24919 0.97837 0.94975 0.96291 1.69925 1.39001 1.26140 1.18356 0.86590 0.84074 0.79033 0.77900 1.20304 1.21221 1.20218 1.20993 0.86723 0.87947 1.02522 1.22932 0.92990 0.99586 1.02783 1.23036 1.03117 1.04037 0.91937 1.22896 1.01195 0.98262 0.99163 1.22391 1.03199 0.98604 0.91563 1.23136 0.92240 1.02708 1.04229 1.22900 0.98170 1.03309 0.97252 0.89037 0.93609 0.93849 0.93526 0.93582 0.89202 0.90048 0.89403 0.95190 0.93919 0.92733 0.89673 0.91508 0.87475 0.88907 0.89239 0.89058 0.88810 0.88292 0.88135 0.89508 0.89394 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.02 37.16 0.30 -2.06 16 2 C -0.01 -0.18 0.62 -154.51 -0.10 -0.27 16 3 C -0.15 -2.28 6.77 37.16 0.25 -2.02 16 4 C -0.13 -1.94 3.30 -27.88 -0.09 -2.03 16 5 C 0.51 10.19 7.09 -10.99 -0.08 10.11 16 6 O -0.53 -12.54 10.93 5.56 0.06 -12.48 16 7 N -0.60 -12.31 2.46 -175.06 -0.43 -12.74 16 8 C 0.25 6.36 5.16 -5.20 -0.03 6.34 16 9 C -0.52 -14.75 9.39 -34.44 -0.32 -15.08 16 10 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 13 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 C 0.14 2.31 5.49 -4.05 -0.02 2.28 16 18 C -0.16 -2.28 5.95 -90.62 -0.54 -2.82 16 19 C -0.18 -2.05 9.18 -26.73 -0.25 -2.29 16 20 C -0.18 -2.00 10.25 -26.74 -0.27 -2.28 16 21 C -0.14 -1.61 5.14 -90.62 -0.47 -2.08 16 22 C -0.19 -1.93 9.57 -26.69 -0.26 -2.18 16 23 C -0.18 -1.89 9.39 -26.69 -0.25 -2.14 16 24 H 0.09 1.77 5.51 -51.93 -0.29 1.48 16 25 H 0.04 0.65 7.29 -51.93 -0.38 0.27 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.63 6.97 -51.93 -0.36 0.27 16 28 H 0.05 0.62 7.07 -51.93 -0.37 0.25 16 29 H 0.09 1.63 5.51 -51.93 -0.29 1.35 16 30 H 0.08 1.12 7.40 -51.93 -0.38 0.74 16 31 H 0.09 1.18 6.84 -51.93 -0.36 0.82 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.08 1.45 8.07 -51.92 -0.42 1.03 16 36 H 0.07 0.92 6.17 -51.93 -0.32 0.60 16 37 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 38 H 0.09 0.94 7.87 -51.93 -0.41 0.53 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.10 1.07 8.11 -51.93 -0.42 0.65 16 43 H 0.10 1.07 5.85 -51.93 -0.30 0.77 16 44 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.09 1.03 7.07 -51.93 -0.37 0.66 16 LS Contribution 356.68 15.07 5.38 5.38 Total: -1.00 -30.55 356.68 -9.47 -40.01 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.97 Total: 3.67 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -2.22 Total: -14.86 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.31 Total: -38.57 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.06 Total: -12.48 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.55 -9.47 -40.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339932994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.676 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds