Wall clock time and date at job start Tue Mar 31 2020 01:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 5 5 C 1.50698 * 109.47184 * 299.99369 * 4 2 1 6 6 O 1.21282 * 120.00025 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00035 * 179.97438 * 5 4 2 8 8 C 1.46496 * 119.99846 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47212 * 90.00427 * 8 7 5 10 10 H 1.07999 * 119.99752 * 359.97438 * 9 8 7 11 11 C 1.37882 * 120.00202 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99568 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99968 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47013 * 60.00505 * 13 11 9 15 15 H 1.48503 * 109.47021 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47718 * 300.00216 * 13 11 9 17 17 C 1.46497 * 119.99801 * 0.02562 * 7 5 4 18 18 C 1.52995 * 109.47580 * 89.99777 * 17 7 5 19 19 C 1.53002 * 117.50065 * 243.62335 * 18 17 7 20 20 C 1.52994 * 117.50530 * 174.99788 * 18 17 7 21 21 C 1.52997 * 109.46991 * 239.99657 * 2 1 3 22 22 C 1.52998 * 117.49757 * 128.75336 * 21 2 1 23 23 C 1.53003 * 117.49978 * 60.09150 * 21 2 1 24 24 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 25 25 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 26 26 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 29 29 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 30 30 H 1.09001 * 109.46801 * 59.99811 * 4 2 1 31 31 H 1.09001 * 109.46998 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.46870 * 210.00004 * 8 7 5 33 33 H 1.08996 * 109.47490 * 330.00312 * 8 7 5 34 34 H 0.97001 * 119.99819 * 179.97438 * 12 11 9 35 35 H 1.09010 * 109.46976 * 209.99920 * 17 7 5 36 36 H 1.09007 * 109.47283 * 329.99472 * 17 7 5 37 37 H 1.09001 * 115.54767 * 29.32789 * 18 17 7 38 38 H 1.08999 * 117.49473 * 359.97438 * 19 18 17 39 39 H 1.09000 * 117.49943 * 145.02056 * 19 18 17 40 40 H 1.08996 * 117.50588 * 214.98097 * 20 18 17 41 41 H 1.09007 * 117.49835 * 0.02562 * 20 18 17 42 42 H 1.09001 * 115.55272 * 274.42036 * 21 2 1 43 43 H 1.09004 * 117.50171 * 359.97438 * 22 21 2 44 44 H 1.09001 * 117.50114 * 145.02267 * 22 21 2 45 45 H 1.08997 * 117.49922 * 214.97679 * 23 21 2 46 46 H 1.08998 * 117.49430 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.5376 -0.0108 2.4797 6 8 0.8401 0.9751 2.3684 7 7 1.8627 -0.4716 3.7039 8 6 1.3740 0.2188 4.8999 9 6 0.0463 -0.3647 5.3095 10 1 -0.3900 -1.1691 4.7359 11 6 -0.6115 0.1283 6.4165 12 7 -0.0798 1.1075 7.1152 13 14 -2.2575 -0.5946 6.9237 14 1 -2.0933 -2.0407 7.2186 15 1 -2.7529 0.1052 8.1363 16 1 -3.2352 -0.4225 5.8194 17 6 2.7048 -1.6628 3.8383 18 6 4.1758 -1.2449 3.8857 19 6 5.0825 -1.7210 2.7489 20 6 5.2134 -2.3396 4.1421 21 6 2.0399 -0.7213 -1.2492 22 6 3.0763 0.0038 -2.1100 23 6 1.6374 -0.1484 -2.6096 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6764 -1.7489 1.2493 31 1 3.1299 -0.7217 1.2492 32 1 2.0917 0.0931 5.7107 33 1 1.2530 1.2801 4.6830 34 1 -0.5427 1.4546 7.8938 35 1 2.4466 -2.1884 4.7577 36 1 2.5415 -2.3214 2.9852 37 1 4.3709 -0.2582 4.3058 38 1 4.6310 -2.3323 1.9675 39 1 5.8743 -1.0475 2.4209 40 1 6.0913 -2.0732 4.7307 41 1 4.8481 -3.3578 4.2767 42 1 2.1252 -1.8047 -1.1647 43 1 3.3946 0.9949 -1.7866 44 1 3.8432 -0.6026 -2.5921 45 1 1.4582 -0.8548 -3.4201 46 1 1.0089 0.7421 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339932994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:06 Heat of formation + Delta-G solvation = -10.912640 kcal Electronic energy + Delta-G solvation = -23082.177464 eV Core-core repulsion = 19972.607531 eV Total energy + Delta-G solvation = -3109.569933 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.28042 -39.34465 -38.25472 -36.15278 -34.57622 -34.32037 -30.38816 -28.73056 -28.22797 -27.33550 -25.09128 -23.76096 -23.14882 -22.96979 -21.78926 -19.98452 -19.12489 -18.58186 -18.03744 -17.13819 -16.65809 -16.44068 -16.08817 -15.89354 -15.32092 -14.95686 -14.69940 -14.46213 -14.23810 -14.10464 -13.70223 -13.38660 -13.21437 -12.91463 -12.73538 -12.58058 -12.53809 -12.42599 -12.26966 -12.18880 -12.13185 -11.82681 -11.81975 -11.64687 -11.57343 -11.22069 -11.04295 -10.80187 -10.66223 -10.62809 -10.13027 -9.33609 -8.20829 -6.35722 1.35764 1.40071 1.47263 1.95330 2.31404 2.47395 2.98924 3.03622 3.08246 3.65276 3.79997 3.92154 4.02527 4.07166 4.12308 4.22411 4.27877 4.35544 4.36877 4.42602 4.65745 4.70824 4.78035 4.80942 4.86371 4.87549 4.90045 4.92051 5.04532 5.09610 5.09826 5.16156 5.18031 5.20859 5.26450 5.35229 5.35714 5.39373 5.46920 5.57082 5.60634 5.69778 5.92510 6.09307 6.72483 6.89730 7.31179 7.62407 8.85717 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014924 B = 0.005588 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.740918 B = 5009.747633 C = 6320.921199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.011 4.011 3 C -0.149 4.149 4 C -0.115 4.115 5 C 0.498 3.502 6 O -0.578 6.578 7 N -0.603 5.603 8 C 0.266 3.734 9 C -0.540 4.540 10 H 0.053 0.947 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.966 3.034 14 H -0.260 1.260 15 H -0.279 1.279 16 H -0.278 1.278 17 C 0.143 3.857 18 C -0.193 4.193 19 C -0.162 4.162 20 C -0.164 4.164 21 C -0.144 4.144 22 C -0.177 4.177 23 C -0.178 4.178 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.015 0.985 33 H -0.005 1.005 34 H 0.266 0.734 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.117 0.883 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.315 -8.997 -16.018 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.011 4.011 3 C -0.206 4.206 4 C -0.155 4.155 5 C 0.288 3.712 6 O -0.459 6.459 7 N -0.334 5.334 8 C 0.144 3.856 9 C -0.578 4.578 10 H 0.071 0.929 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.790 3.210 14 H -0.185 1.185 15 H -0.204 1.204 16 H -0.203 1.203 17 C 0.021 3.979 18 C -0.213 4.213 19 C -0.199 4.199 20 C -0.201 4.201 21 C -0.162 4.162 22 C -0.214 4.214 23 C -0.215 4.215 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.033 0.967 33 H 0.013 0.987 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.135 0.865 43 H 0.112 0.888 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.931 -8.378 -15.894 20.529 hybrid contribution -1.044 0.365 1.022 1.506 sum 8.886 -8.013 -14.873 19.089 Atomic orbital electron populations 1.21995 0.95409 1.01243 1.01771 1.19690 0.94846 0.94578 0.91996 1.22109 1.00456 0.96216 1.01770 1.21783 1.03180 1.00136 0.90401 1.21323 0.79851 0.84595 0.85432 1.90532 1.39816 1.28955 1.86550 1.48202 1.49634 1.29228 1.06294 1.18620 0.93300 0.91565 0.82117 1.21676 1.05825 1.19023 1.11289 0.92922 1.25844 1.01727 0.95260 0.96254 1.70055 1.40694 1.27355 1.18823 0.85501 0.78974 0.79086 0.77456 1.18463 1.20399 1.20347 1.21181 0.87298 0.86373 1.03098 1.22643 0.92363 0.99464 1.06788 1.23166 1.01577 1.03275 0.91839 1.23012 0.99799 0.97804 0.99505 1.22256 1.04482 0.99206 0.90288 1.23193 0.92495 1.02478 1.03240 1.22969 0.98334 1.03225 0.97009 0.93407 0.92579 0.92964 0.92134 0.92663 0.93375 0.87851 0.87091 0.96733 0.98662 0.92506 0.91306 0.88304 0.90443 0.86803 0.88300 0.88349 0.87391 0.86509 0.88773 0.87468 0.87663 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.58 8.02 71.98 0.58 -4.00 16 2 C -0.01 -0.29 0.62 -52.18 -0.03 -0.32 16 3 C -0.15 -4.37 6.77 71.98 0.49 -3.88 16 4 C -0.12 -3.24 3.30 29.85 0.10 -3.14 16 5 C 0.50 20.52 7.09 87.66 0.62 21.14 16 6 O -0.58 -29.03 10.93 -3.04 -0.03 -29.06 16 7 N -0.60 -25.89 2.46 -826.16 -2.03 -27.92 16 8 C 0.27 14.65 5.16 85.63 0.44 15.09 16 9 C -0.54 -31.59 9.39 25.60 0.24 -31.35 16 10 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 11 C 0.01 0.46 5.46 84.66 0.46 0.93 16 12 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 13 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 14 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 17 C 0.14 4.57 5.49 86.38 0.47 5.04 16 18 C -0.19 -5.24 5.95 -10.80 -0.06 -5.30 16 19 C -0.16 -3.03 9.18 30.59 0.28 -2.75 16 20 C -0.16 -3.26 10.25 30.59 0.31 -2.95 16 21 C -0.14 -2.81 5.14 -10.79 -0.06 -2.87 16 22 C -0.18 -2.99 9.57 30.62 0.29 -2.69 16 23 C -0.18 -3.17 9.39 30.62 0.29 -2.88 16 24 H 0.05 1.93 5.51 -2.39 -0.01 1.92 16 25 H 0.06 1.57 7.29 -2.39 -0.02 1.55 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 27 H 0.06 1.57 6.97 -2.39 -0.02 1.55 16 28 H 0.05 1.47 7.07 -2.39 -0.02 1.46 16 29 H 0.05 1.85 5.51 -2.39 -0.01 1.83 16 30 H 0.10 2.49 7.40 -2.39 -0.02 2.47 16 31 H 0.11 2.62 6.84 -2.39 -0.02 2.60 16 32 H 0.01 0.83 8.07 -2.38 -0.02 0.81 16 33 H 0.00 -0.30 7.42 -2.39 -0.02 -0.32 16 34 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.07 2.38 8.07 -2.38 -0.02 2.36 16 36 H 0.10 2.47 6.17 -2.38 -0.01 2.45 16 37 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.11 1.70 7.87 -2.39 -0.02 1.68 16 39 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.12 1.93 8.11 -2.39 -0.02 1.91 16 43 H 0.09 1.72 5.85 -2.38 -0.01 1.71 16 44 H 0.11 1.41 8.14 -2.39 -0.02 1.40 16 45 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.08 1.66 7.07 -2.39 -0.02 1.64 16 Total: -1.00 -71.58 356.68 5.61 -65.96 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.94 Total: 20.33 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 4.43 Total: -19.94 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -1.74 Total: -84.90 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.03 Total: -29.06 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -71.58 5.61 -65.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339932994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.051 kcal (2) G-P(sol) polarization free energy of solvation -71.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds