Wall clock time and date at job start Tue Mar 31 2020 01:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47025 * 2 1 4 4 C 1.52997 * 109.47132 * 120.00413 * 2 1 3 5 5 C 1.50697 * 109.46860 * 299.99627 * 4 2 1 6 6 O 1.21294 * 120.00207 * 0.02562 * 5 4 2 7 7 N 1.34782 * 119.99835 * 180.02562 * 5 4 2 8 8 C 1.37103 * 119.99810 * 180.02562 * 7 5 4 9 9 H 1.08006 * 119.99826 * 137.64909 * 8 7 5 10 10 C 1.38948 * 120.00078 * 317.64937 * 8 7 5 11 11 N 1.31408 * 120.00009 * 340.26897 * 10 8 7 12 12 Si 1.86803 * 119.99874 * 160.26793 * 10 8 7 13 13 H 1.48505 * 109.46928 * 90.00060 * 12 10 8 14 14 H 1.48503 * 109.47102 * 209.99722 * 12 10 8 15 15 H 1.48494 * 109.47199 * 329.99909 * 12 10 8 16 16 C 1.46497 * 119.99854 * 0.02562 * 7 5 4 17 17 C 1.54961 * 110.92253 * 131.63021 * 16 7 5 18 18 C 1.54269 * 104.16041 * 156.29500 * 17 16 7 19 19 C 1.53871 * 106.64048 * 336.43958 * 18 17 16 20 20 C 1.54271 * 106.59859 * 359.97438 * 19 18 17 21 21 C 1.53004 * 109.46840 * 240.00521 * 2 1 3 22 22 C 1.52991 * 117.49767 * 128.74780 * 21 2 1 23 23 C 1.52991 * 117.50087 * 60.08604 * 21 2 1 24 24 H 1.08995 * 109.47414 * 299.99676 * 1 2 3 25 25 H 1.09004 * 109.47485 * 59.99999 * 1 2 3 26 26 H 1.09004 * 109.47161 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47611 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47691 * 300.00559 * 3 2 1 29 29 H 1.09006 * 109.47246 * 60.00063 * 3 2 1 30 30 H 1.09003 * 109.46929 * 180.02562 * 4 2 1 31 31 H 1.08992 * 109.47330 * 59.99743 * 4 2 1 32 32 H 0.96997 * 119.99923 * 180.02562 * 11 10 8 33 33 H 1.08997 * 110.67571 * 8.31807 * 16 7 5 34 34 H 1.08999 * 110.48103 * 37.63716 * 17 16 7 35 35 H 1.09005 * 110.52772 * 274.96982 * 17 16 7 36 36 H 1.09000 * 110.02946 * 217.13058 * 18 17 16 37 37 H 1.09000 * 110.03154 * 95.75244 * 18 17 16 38 38 H 1.09003 * 110.03054 * 119.25960 * 19 18 17 39 39 H 1.08997 * 110.03430 * 240.64838 * 19 18 17 40 40 H 1.09000 * 110.48609 * 142.28886 * 20 19 18 41 41 H 1.08998 * 110.48420 * 264.79955 * 20 19 18 42 42 H 1.09004 * 115.54474 * 274.40872 * 21 2 1 43 43 H 1.09001 * 117.50190 * 359.97438 * 22 21 2 44 44 H 1.09005 * 117.50184 * 145.01912 * 22 21 2 45 45 H 1.09001 * 117.49876 * 214.97675 * 23 21 2 46 46 H 1.09000 * 117.50203 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5377 -0.0109 2.4796 6 8 0.8400 0.9750 2.3684 7 7 1.8637 -0.4712 3.7037 8 6 1.4063 0.1749 4.8232 9 1 1.0382 -0.3955 5.6632 10 6 1.4164 1.5633 4.8770 11 7 2.1922 2.2466 4.0658 12 14 0.3271 2.4584 6.1024 13 1 1.0683 2.6514 7.3748 14 1 -0.0580 3.7813 5.5483 15 1 -0.8947 1.6542 6.3583 16 6 2.7069 -1.6617 3.8381 17 6 3.8573 -1.4141 4.8462 18 6 4.2428 -2.8263 5.3332 19 6 3.0108 -3.7208 5.1104 20 6 1.9183 -2.8212 4.4962 21 6 2.0399 -0.7212 -1.2494 22 6 3.0762 0.0041 -2.1101 23 6 1.6373 -0.1482 -2.6096 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7209 1.2494 31 1 1.6767 -1.7489 1.2491 32 1 2.1995 3.2158 4.1036 33 1 3.1021 -1.9647 2.8685 34 1 3.5091 -0.8048 5.6802 35 1 4.7033 -0.9371 4.3512 36 1 4.4980 -2.7992 6.3925 37 1 5.0871 -3.2028 4.7556 38 1 3.2569 -4.5310 4.4240 39 1 2.6685 -4.1284 6.0615 40 1 1.3497 -3.3701 3.7456 41 1 1.2553 -2.4415 5.2735 42 1 2.1253 -1.8046 -1.1648 43 1 3.3944 0.9951 -1.7866 44 1 3.8431 -0.6022 -2.5923 45 1 1.4582 -0.8546 -3.4202 46 1 1.0088 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340570585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:10 Heat of formation + Delta-G solvation = -29.456643 kcal Electronic energy + Delta-G solvation = -23747.793969 eV Core-core repulsion = 20637.419908 eV Total energy + Delta-G solvation = -3110.374062 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.96511 -39.48085 -38.09707 -35.38678 -34.06884 -33.37297 -29.42827 -29.25468 -28.27739 -28.15045 -26.23735 -24.09114 -22.99398 -21.55974 -21.05429 -20.92155 -19.07422 -18.07158 -17.66871 -16.98131 -16.47063 -16.26198 -15.69653 -15.63205 -15.48244 -14.65631 -14.61429 -14.25350 -14.06588 -13.89073 -13.44319 -13.20216 -13.09468 -12.82476 -12.60772 -12.58314 -12.34664 -12.27404 -11.99920 -11.95585 -11.88896 -11.81451 -11.79615 -11.64651 -11.48317 -11.26462 -11.11667 -10.99787 -10.64325 -10.61764 -9.57531 -8.85849 -8.09444 -5.82101 1.37229 1.44025 1.50565 2.36356 2.61159 3.00251 3.25699 3.33333 3.82821 3.93436 3.97247 3.98966 4.11300 4.16815 4.28005 4.40008 4.41936 4.51932 4.63426 4.72868 4.73581 4.79040 4.83166 4.86657 4.87678 4.91284 4.95091 4.98648 5.08687 5.11682 5.18530 5.22577 5.23355 5.30208 5.31153 5.37156 5.47760 5.49643 5.60339 5.63582 5.67354 5.70863 5.85428 6.32177 7.18229 7.39220 7.89598 8.57034 8.98045 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013657 B = 0.007307 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.801500 B = 3830.775211 C = 5257.408377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.006 4.006 3 C -0.139 4.139 4 C -0.111 4.111 5 C 0.466 3.534 6 O -0.563 6.563 7 N -0.465 5.465 8 C -0.342 4.342 9 H 0.070 0.930 10 C 0.027 3.973 11 N -0.861 5.861 12 Si 0.955 3.045 13 H -0.271 1.271 14 H -0.297 1.297 15 H -0.272 1.272 16 C 0.120 3.880 17 C -0.121 4.121 18 C -0.114 4.114 19 C -0.111 4.111 20 C -0.128 4.128 21 C -0.147 4.147 22 C -0.184 4.184 23 C -0.170 4.170 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.253 0.747 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.047 0.953 42 H 0.115 0.885 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 -11.237 -7.177 13.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.007 4.007 3 C -0.196 4.196 4 C -0.152 4.152 5 C 0.255 3.745 6 O -0.444 6.444 7 N -0.187 5.187 8 C -0.470 4.470 9 H 0.088 0.912 10 C -0.179 4.179 11 N -0.497 5.497 12 Si 0.781 3.219 13 H -0.197 1.197 14 H -0.223 1.223 15 H -0.197 1.197 16 C 0.016 3.984 17 C -0.159 4.159 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.167 4.167 21 C -0.165 4.165 22 C -0.221 4.221 23 C -0.207 4.207 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.133 0.867 43 H 0.105 0.895 44 H 0.125 0.875 45 H 0.128 0.872 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.202 -10.558 -7.271 13.213 hybrid contribution -0.483 1.178 0.863 1.538 sum 2.719 -9.380 -6.408 11.681 Atomic orbital electron populations 1.21918 0.94883 1.01052 1.01697 1.19616 0.95229 0.94036 0.91780 1.22013 0.99309 0.96811 1.01496 1.21589 1.00941 0.99837 0.92788 1.20672 0.82865 0.86074 0.84897 1.90363 1.40647 1.27656 1.85753 1.43557 1.44801 1.25820 1.04490 1.18895 1.42400 0.89001 0.96682 0.91206 1.25778 0.96173 0.98112 0.97809 1.69982 1.34848 1.06314 1.38554 0.85558 0.79877 0.77603 0.78835 1.19678 1.22322 1.19725 1.22301 0.91059 0.86483 0.98575 1.22468 0.96965 0.97531 0.98984 1.22058 0.98340 0.93539 1.01249 1.22031 0.94180 0.97531 1.01139 1.22611 0.98215 0.96087 0.99806 1.22317 1.04414 0.99080 0.90709 1.23167 0.92838 1.02333 1.03764 1.22952 0.97734 1.03165 0.96869 0.93030 0.92942 0.92917 0.94004 0.93312 0.92861 0.90658 0.89125 0.93795 0.89320 0.93163 0.93650 0.91664 0.90398 0.89890 0.91307 0.91442 0.93407 0.86748 0.89451 0.87496 0.87193 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 8.02 71.98 0.58 -4.39 16 2 C -0.01 -0.21 0.62 -52.18 -0.03 -0.25 16 3 C -0.14 -5.46 6.77 71.98 0.49 -4.97 16 4 C -0.11 -4.16 3.08 29.85 0.09 -4.07 16 5 C 0.47 22.87 6.39 87.66 0.56 23.43 16 6 O -0.56 -31.91 8.97 -3.07 -0.03 -31.94 16 7 N -0.47 -22.73 2.57 -606.31 -1.56 -24.29 16 8 C -0.34 -18.66 7.42 84.04 0.62 -18.04 16 9 H 0.07 3.76 7.02 -2.91 -0.02 3.74 16 10 C 0.03 1.56 4.33 84.93 0.37 1.93 16 11 N -0.86 -51.77 11.67 21.66 0.25 -51.52 16 12 Si 0.95 46.37 29.60 68.60 2.03 48.40 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 14 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 15 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 16 C 0.12 4.58 3.16 46.31 0.15 4.73 16 17 C -0.12 -4.47 6.31 31.70 0.20 -4.27 16 18 C -0.11 -3.03 6.80 31.32 0.21 -2.81 16 19 C -0.11 -2.74 6.80 31.32 0.21 -2.53 16 20 C -0.13 -4.17 6.42 31.67 0.20 -3.97 16 21 C -0.15 -3.87 5.14 -10.80 -0.06 -3.92 16 22 C -0.18 -4.38 9.57 30.61 0.29 -4.09 16 23 C -0.17 -3.88 9.38 30.61 0.29 -3.60 16 24 H 0.05 2.31 5.51 -2.39 -0.01 2.30 16 25 H 0.05 1.69 7.29 -2.39 -0.02 1.68 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.04 1.58 6.97 -2.39 -0.02 1.57 16 28 H 0.05 1.71 7.07 -2.39 -0.02 1.69 16 29 H 0.05 2.66 5.51 -2.38 -0.01 2.64 16 30 H 0.08 2.74 7.65 -2.39 -0.02 2.72 16 31 H 0.09 2.94 7.96 -2.39 -0.02 2.92 16 32 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 33 H 0.09 3.02 5.96 -2.39 -0.01 3.01 16 34 H 0.05 2.20 6.96 -2.39 -0.02 2.18 16 35 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.05 1.79 6.92 -2.39 -0.02 1.78 16 42 H 0.11 2.64 8.11 -2.38 -0.02 2.62 16 43 H 0.09 2.33 5.85 -2.39 -0.01 2.31 16 44 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 45 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.08 2.07 7.07 -2.39 -0.02 2.05 16 Total: -1.00 -66.81 341.80 5.81 -61.00 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.94 Total: 25.17 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 4.18 Total: -26.82 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -1.31 Total: -75.81 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.03 Total: -31.94 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -66.81 5.81 -61.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340570585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.542 kcal (2) G-P(sol) polarization free energy of solvation -66.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds