Wall clock time and date at job start Tue Mar 31 2020 01:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47138 * 2 1 4 4 C 1.52998 * 109.47160 * 239.99294 * 2 1 3 5 5 C 1.53005 * 109.46943 * 119.99495 * 2 1 3 6 6 N 1.46496 * 109.46942 * 60.00225 * 5 2 1 7 7 C 1.46497 * 120.00129 * 269.99599 * 6 5 2 8 8 C 1.50709 * 109.47273 * 270.00327 * 7 6 5 9 9 H 1.07999 * 119.99476 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00210 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99914 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00074 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46996 * 90.00193 * 12 10 8 14 14 H 1.48502 * 109.46931 * 210.00078 * 12 10 8 15 15 H 1.48498 * 109.47167 * 330.00145 * 12 10 8 16 16 C 1.34777 * 120.00345 * 90.00092 * 6 5 2 17 17 O 1.21283 * 120.00463 * 179.97438 * 16 6 5 18 18 C 1.50700 * 119.99675 * 359.72090 * 16 6 5 19 19 H 1.08999 * 115.52818 * 34.77633 * 18 16 6 20 20 C 1.52999 * 117.46024 * 180.28030 * 18 16 6 21 21 H 1.08998 * 119.29921 * 356.28696 * 20 18 16 22 22 C 1.54266 * 118.19961 * 202.14882 * 20 18 16 23 23 C 1.54890 * 104.19891 * 272.21128 * 22 20 18 24 24 C 1.54891 * 102.74634 * 37.93874 * 23 22 20 25 25 C 1.53001 * 117.45972 * 249.32095 * 18 16 6 26 26 H 1.08997 * 119.29968 * 3.70639 * 25 18 16 27 27 H 1.09003 * 109.47074 * 300.00261 * 1 2 3 28 28 H 1.08997 * 109.47039 * 60.00235 * 1 2 3 29 29 H 1.09002 * 109.47079 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47195 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46786 * 299.99809 * 3 2 1 32 32 H 1.08998 * 109.47437 * 59.99427 * 3 2 1 33 33 H 1.08992 * 109.47445 * 300.00162 * 4 2 1 34 34 H 1.09007 * 109.46851 * 60.00138 * 4 2 1 35 35 H 1.08997 * 109.47391 * 179.97438 * 4 2 1 36 36 H 1.08995 * 109.47592 * 299.99750 * 5 2 1 37 37 H 1.09002 * 109.47093 * 180.02562 * 5 2 1 38 38 H 1.09000 * 109.46889 * 29.99981 * 7 6 5 39 39 H 1.09001 * 109.47460 * 150.00590 * 7 6 5 40 40 H 0.97000 * 120.00447 * 179.97438 * 11 10 8 41 41 H 1.09004 * 110.48692 * 30.88559 * 22 20 18 42 42 H 1.09000 * 110.48838 * 153.39586 * 22 20 18 43 43 H 1.08992 * 110.76174 * 156.25603 * 23 22 20 44 44 H 1.09006 * 110.75264 * 279.63012 * 23 22 20 45 45 H 1.09000 * 110.48724 * 80.73783 * 24 23 22 46 46 H 1.09006 * 110.48458 * 203.38314 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0400 -0.7212 1.2494 6 7 1.5516 -2.1023 1.2494 7 6 0.2716 -2.4267 1.8838 8 6 0.5024 -2.7747 3.3319 9 1 1.5027 -2.7564 3.7387 10 6 -0.5633 -3.1162 4.1372 11 7 -1.7812 -3.1389 3.6415 12 14 -0.2770 -3.5482 5.9318 13 1 -0.3677 -2.3174 6.7577 14 1 -1.3074 -4.5203 6.3774 15 1 1.0715 -4.1503 6.0870 16 6 2.2800 -3.0747 0.6659 17 8 1.8760 -4.2183 0.6663 18 6 3.5938 -2.7401 0.0079 19 1 4.1721 -1.9508 0.4882 20 6 4.3697 -3.8873 -0.6423 21 1 3.9874 -4.9046 -0.5586 22 6 5.8883 -3.7142 -0.8509 23 6 6.0057 -3.0232 -2.2322 24 6 4.8065 -2.0429 -2.2270 25 6 3.6638 -2.8367 -1.5174 26 1 2.7616 -3.0802 -2.0784 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6766 -0.2076 -2.1392 35 1 3.1300 -0.7210 -1.2494 36 1 1.6767 -0.2073 2.1393 37 1 3.1300 -0.7208 1.2496 38 1 -0.3945 -1.5664 1.8186 39 1 -0.1817 -3.2767 1.3737 40 1 -2.5310 -3.3796 4.2079 41 1 6.3109 -3.0811 -0.0706 42 1 6.3847 -4.6845 -0.8641 43 1 6.9476 -2.4809 -2.3141 44 1 5.9063 -3.7508 -3.0378 45 1 5.0543 -1.1400 -1.6689 46 1 4.5131 -1.7937 -3.2468 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344494583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:50 Heat of formation + Delta-G solvation = -21.031369 kcal Electronic energy + Delta-G solvation = -23630.418529 eV Core-core repulsion = 20520.409815 eV Total energy + Delta-G solvation = -3110.008714 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.38015 -38.21947 -36.83148 -33.82082 -32.34805 -31.65442 -28.58228 -27.93628 -26.92256 -26.57049 -25.51991 -24.12055 -21.93841 -20.56747 -19.70005 -19.06127 -18.04487 -16.66626 -16.34637 -15.61352 -15.00504 -14.94750 -14.57026 -14.18401 -13.83017 -13.56112 -13.37260 -12.99836 -12.75805 -12.57984 -12.32920 -11.97444 -11.84325 -11.43920 -11.40984 -11.32641 -11.19785 -11.08847 -11.04002 -10.90178 -10.86286 -10.73399 -10.55187 -10.32459 -10.18886 -10.07011 -9.74265 -9.53911 -9.50087 -8.79094 -8.38943 -7.55356 -6.00752 -4.04879 3.16443 3.31868 3.38595 3.43569 3.86253 4.06610 4.46573 4.60462 4.81716 4.82724 5.06788 5.11844 5.19124 5.23556 5.29498 5.33224 5.44299 5.47228 5.51198 5.57105 5.70386 5.75940 5.79614 5.80206 5.86398 5.95979 6.03999 6.04726 6.07111 6.14910 6.16823 6.25023 6.30666 6.34174 6.43516 6.48613 6.50325 6.69230 6.78853 7.15997 7.48815 7.62356 7.96376 8.28788 8.50639 8.94893 9.18109 9.60056 11.07057 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017486 B = 0.005858 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.853521 B = 4778.398358 C = 5806.898606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.136 4.136 4 C -0.147 4.147 5 C 0.123 3.877 6 N -0.587 5.587 7 C 0.243 3.757 8 C -0.525 4.525 9 H 0.056 0.944 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.896 3.104 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.535 3.465 17 O -0.544 6.544 18 C -0.154 4.154 19 H 0.113 0.887 20 C -0.144 4.144 21 H 0.118 0.882 22 C -0.095 4.095 23 C -0.123 4.123 24 C -0.094 4.094 25 C -0.133 4.133 26 H 0.115 0.885 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.262 0.738 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.825 7.518 -11.668 18.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 C -0.194 4.194 4 C -0.204 4.204 5 C -0.002 4.002 6 N -0.317 5.317 7 C 0.124 3.876 8 C -0.564 4.564 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.724 3.276 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.199 1.199 16 C 0.322 3.678 17 O -0.422 6.422 18 C -0.175 4.175 19 H 0.131 0.869 20 C -0.162 4.162 21 H 0.136 0.864 22 C -0.133 4.133 23 C -0.160 4.160 24 C -0.131 4.131 25 C -0.152 4.152 26 H 0.133 0.867 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.386 6.867 -11.596 18.304 hybrid contribution -0.055 -0.141 1.212 1.221 sum 12.331 6.726 -10.384 17.468 Atomic orbital electron populations 1.21954 0.94197 1.02929 1.00778 1.21005 0.96600 0.94967 0.96252 1.21793 1.00448 0.95549 1.01594 1.22388 1.01218 1.00647 0.96177 1.21522 0.98045 0.83245 0.97364 1.48063 1.23055 1.06107 1.54456 1.19397 0.78773 0.97267 0.92176 1.21468 0.93653 1.46382 0.94854 0.92585 1.24914 0.95005 0.95384 0.98756 1.69930 0.98656 1.48739 1.36125 0.86527 0.78025 0.78200 0.84851 1.20683 1.21127 1.19945 1.19310 0.84476 0.85211 0.78837 1.90659 1.71216 1.20218 1.60078 1.22580 0.97731 1.01861 0.95367 0.86905 1.23315 0.93273 0.95993 1.03626 0.86435 1.21968 0.93767 1.00692 0.96840 1.22667 0.97807 0.98124 0.97434 1.22375 0.93205 0.97476 1.00062 1.23672 0.99904 1.01412 0.90214 0.86674 0.92597 0.93726 0.91392 0.92996 0.92880 0.92637 0.92081 0.93690 0.91675 0.90250 0.91738 0.94132 0.94199 0.92798 0.91515 0.91243 0.91516 0.91332 0.91197 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 7.23 37.16 0.27 -1.96 16 2 C -0.09 -1.22 0.84 -154.51 -0.13 -1.35 16 3 C -0.14 -1.53 8.47 37.16 0.31 -1.22 16 4 C -0.15 -1.94 5.96 37.16 0.22 -1.72 16 5 C 0.12 2.04 4.55 -4.04 -0.02 2.02 16 6 N -0.59 -12.44 1.98 -175.06 -0.35 -12.78 16 7 C 0.24 6.33 4.07 -5.19 -0.02 6.31 16 8 C -0.52 -15.04 9.39 -34.44 -0.32 -15.36 16 9 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 11 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 12 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 16 C 0.54 11.37 6.09 -10.98 -0.07 11.30 16 17 O -0.54 -14.08 15.90 5.55 0.09 -13.99 16 18 C -0.15 -2.42 3.33 -91.77 -0.31 -2.72 16 19 H 0.11 1.59 6.45 -51.93 -0.33 1.25 16 20 C -0.14 -2.05 6.35 -89.50 -0.57 -2.62 16 21 H 0.12 1.93 7.78 -51.93 -0.40 1.53 16 22 C -0.10 -1.03 6.62 -25.07 -0.17 -1.20 16 23 C -0.12 -1.11 6.91 -24.74 -0.17 -1.28 16 24 C -0.09 -0.91 5.73 -24.02 -0.14 -1.05 16 25 C -0.13 -1.74 3.84 -88.45 -0.34 -2.08 16 26 H 0.12 1.63 7.22 -51.93 -0.37 1.25 16 27 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.27 5.99 -51.93 -0.31 0.96 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.96 4.60 -51.93 -0.24 0.72 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.76 4.32 -51.93 -0.22 0.54 16 36 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 37 H 0.06 0.94 6.01 -51.93 -0.31 0.62 16 38 H 0.04 1.06 6.05 -51.93 -0.31 0.74 16 39 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 343.87 15.07 5.18 5.18 Total: -1.00 -32.12 343.87 -8.80 -40.92 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.90 Total: 0.82 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -1.54 Total: -11.25 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.39 Total: -38.81 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.09 Total: -13.99 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.12 -8.80 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344494583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.890 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds