Wall clock time and date at job start Tue Mar 31 2020 01:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47138 * 2 1 4 4 C 1.52998 * 109.47160 * 239.99294 * 2 1 3 5 5 C 1.53005 * 109.46943 * 119.99495 * 2 1 3 6 6 N 1.46496 * 109.46942 * 60.00225 * 5 2 1 7 7 C 1.46497 * 120.00129 * 269.99599 * 6 5 2 8 8 C 1.50709 * 109.47273 * 270.00327 * 7 6 5 9 9 H 1.07999 * 119.99476 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00210 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99914 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00074 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46996 * 90.00193 * 12 10 8 14 14 H 1.48502 * 109.46931 * 210.00078 * 12 10 8 15 15 H 1.48498 * 109.47167 * 330.00145 * 12 10 8 16 16 C 1.34777 * 120.00345 * 90.00092 * 6 5 2 17 17 O 1.21283 * 120.00463 * 179.97438 * 16 6 5 18 18 C 1.50700 * 119.99675 * 359.72090 * 16 6 5 19 19 H 1.08999 * 115.52818 * 34.77633 * 18 16 6 20 20 C 1.52999 * 117.46024 * 180.28030 * 18 16 6 21 21 H 1.08998 * 119.29921 * 356.28696 * 20 18 16 22 22 C 1.54266 * 118.19961 * 202.14882 * 20 18 16 23 23 C 1.54890 * 104.19891 * 272.21128 * 22 20 18 24 24 C 1.54891 * 102.74634 * 37.93874 * 23 22 20 25 25 C 1.53001 * 117.45972 * 249.32095 * 18 16 6 26 26 H 1.08997 * 119.29968 * 3.70639 * 25 18 16 27 27 H 1.09003 * 109.47074 * 300.00261 * 1 2 3 28 28 H 1.08997 * 109.47039 * 60.00235 * 1 2 3 29 29 H 1.09002 * 109.47079 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47195 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46786 * 299.99809 * 3 2 1 32 32 H 1.08998 * 109.47437 * 59.99427 * 3 2 1 33 33 H 1.08992 * 109.47445 * 300.00162 * 4 2 1 34 34 H 1.09007 * 109.46851 * 60.00138 * 4 2 1 35 35 H 1.08997 * 109.47391 * 179.97438 * 4 2 1 36 36 H 1.08995 * 109.47592 * 299.99750 * 5 2 1 37 37 H 1.09002 * 109.47093 * 180.02562 * 5 2 1 38 38 H 1.09000 * 109.46889 * 29.99981 * 7 6 5 39 39 H 1.09001 * 109.47460 * 150.00590 * 7 6 5 40 40 H 0.97000 * 120.00447 * 179.97438 * 11 10 8 41 41 H 1.09004 * 110.48692 * 30.88559 * 22 20 18 42 42 H 1.09000 * 110.48838 * 153.39586 * 22 20 18 43 43 H 1.08992 * 110.76174 * 156.25603 * 23 22 20 44 44 H 1.09006 * 110.75264 * 279.63012 * 23 22 20 45 45 H 1.09000 * 110.48724 * 80.73783 * 24 23 22 46 46 H 1.09006 * 110.48458 * 203.38314 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0400 -0.7212 1.2494 6 7 1.5516 -2.1023 1.2494 7 6 0.2716 -2.4267 1.8838 8 6 0.5024 -2.7747 3.3319 9 1 1.5027 -2.7564 3.7387 10 6 -0.5633 -3.1162 4.1372 11 7 -1.7812 -3.1389 3.6415 12 14 -0.2770 -3.5482 5.9318 13 1 -0.3677 -2.3174 6.7577 14 1 -1.3074 -4.5203 6.3774 15 1 1.0715 -4.1503 6.0870 16 6 2.2800 -3.0747 0.6659 17 8 1.8760 -4.2183 0.6663 18 6 3.5938 -2.7401 0.0079 19 1 4.1721 -1.9508 0.4882 20 6 4.3697 -3.8873 -0.6423 21 1 3.9874 -4.9046 -0.5586 22 6 5.8883 -3.7142 -0.8509 23 6 6.0057 -3.0232 -2.2322 24 6 4.8065 -2.0429 -2.2270 25 6 3.6638 -2.8367 -1.5174 26 1 2.7616 -3.0802 -2.0784 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6766 -0.2076 -2.1392 35 1 3.1300 -0.7210 -1.2494 36 1 1.6767 -0.2073 2.1393 37 1 3.1300 -0.7208 1.2496 38 1 -0.3945 -1.5664 1.8186 39 1 -0.1817 -3.2767 1.3737 40 1 -2.5310 -3.3796 4.2079 41 1 6.3109 -3.0811 -0.0706 42 1 6.3847 -4.6845 -0.8641 43 1 6.9476 -2.4809 -2.3141 44 1 5.9063 -3.7508 -3.0378 45 1 5.0543 -1.1400 -1.6689 46 1 4.5131 -1.7937 -3.2468 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344494583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:50 Heat of formation + Delta-G solvation = -39.315733 kcal Electronic energy + Delta-G solvation = -23631.211399 eV Core-core repulsion = 20520.409815 eV Total energy + Delta-G solvation = -3110.801584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.73354 -39.48112 -38.32838 -35.67050 -34.31802 -32.71724 -29.88493 -29.46372 -28.08078 -27.68153 -26.97585 -25.85393 -23.53973 -21.48824 -20.77444 -20.42482 -19.40195 -18.71833 -17.95217 -17.26337 -16.52806 -16.34484 -15.94178 -15.43647 -15.10192 -14.78143 -14.68104 -14.39910 -14.16095 -13.92120 -13.78038 -13.50945 -13.18953 -12.99388 -12.77024 -12.60726 -12.57899 -12.50781 -12.22638 -12.17577 -12.10855 -12.00153 -11.90230 -11.67924 -11.59943 -11.44659 -11.35143 -10.92658 -10.70060 -10.63476 -10.39975 -9.36491 -8.23679 -6.38882 1.32773 1.36242 1.46419 1.65937 2.26672 2.41282 2.82911 3.04897 3.47789 3.79081 3.82075 3.90057 3.95417 4.06640 4.15952 4.23782 4.30599 4.52628 4.54923 4.56834 4.63812 4.72697 4.82743 4.86220 4.89046 4.96818 5.00254 5.02567 5.07062 5.14308 5.15490 5.20624 5.24609 5.27204 5.29028 5.29799 5.35516 5.40101 5.50930 5.55734 5.57786 5.63616 5.88331 6.06933 6.68776 6.81763 7.26668 7.50315 8.82843 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017486 B = 0.005858 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.853521 B = 4778.398358 C = 5806.898606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 C -0.129 4.129 4 C -0.141 4.141 5 C 0.116 3.884 6 N -0.589 5.589 7 C 0.263 3.737 8 C -0.545 4.545 9 H 0.049 0.951 10 C 0.008 3.992 11 N -0.928 5.928 12 Si 0.967 3.033 13 H -0.261 1.261 14 H -0.280 1.280 15 H -0.275 1.275 16 C 0.524 3.476 17 O -0.608 6.608 18 C -0.160 4.160 19 H 0.139 0.861 20 C -0.156 4.156 21 H 0.082 0.918 22 C -0.089 4.089 23 C -0.115 4.115 24 C -0.086 4.086 25 C -0.113 4.113 26 H 0.097 0.903 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.025 0.975 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.026 0.974 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.035 0.965 39 H -0.014 1.014 40 H 0.267 0.733 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.044 10.052 -12.424 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 C -0.186 4.186 4 C -0.198 4.198 5 C -0.006 4.006 6 N -0.317 5.317 7 C 0.142 3.858 8 C -0.584 4.584 9 H 0.067 0.933 10 C -0.191 4.191 11 N -0.568 5.568 12 Si 0.791 3.209 13 H -0.186 1.186 14 H -0.205 1.205 15 H -0.200 1.200 16 C 0.314 3.686 17 O -0.490 6.490 18 C -0.181 4.181 19 H 0.157 0.843 20 C -0.175 4.175 21 H 0.100 0.900 22 C -0.127 4.127 23 C -0.153 4.153 24 C -0.123 4.123 25 C -0.132 4.132 26 H 0.115 0.885 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.053 0.947 39 H 0.005 0.995 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.107 0.893 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.628 9.455 -12.366 22.058 hybrid contribution -1.142 -0.980 1.413 2.065 sum 14.486 8.474 -10.953 20.040 Atomic orbital electron populations 1.21919 0.96154 1.00265 1.01335 1.20986 0.94942 0.97085 0.95262 1.21737 1.01900 0.92622 1.02361 1.22332 1.02528 0.98630 0.96280 1.21855 0.99767 0.80532 0.98462 1.48033 1.21450 1.08440 1.53793 1.18805 0.81133 0.94844 0.91036 1.21745 0.93497 1.47014 0.96114 0.93252 1.25847 0.94624 0.94925 1.03658 1.70056 0.99554 1.49189 1.37965 0.85426 0.77736 0.78617 0.79094 1.18564 1.20526 1.19991 1.20343 0.86065 0.84145 0.78025 1.90612 1.73160 1.22840 1.62427 1.22425 0.94755 1.03678 0.97204 0.84303 1.23422 0.96105 0.94139 1.03836 0.89995 1.22009 0.90400 1.01676 0.98570 1.22669 0.98666 0.97979 0.95942 1.22456 0.91445 0.97646 1.00716 1.23792 1.00177 1.00875 0.88320 0.88528 0.93682 0.91458 0.95630 0.90614 0.91274 0.92816 0.95462 0.91867 0.89389 0.91528 0.88645 0.94703 0.99546 0.92423 0.90432 0.90743 0.88748 0.91126 0.89273 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 7.23 71.98 0.52 -3.98 16 2 C -0.08 -2.18 0.84 -52.18 -0.04 -2.22 16 3 C -0.13 -2.41 8.47 71.98 0.61 -1.80 16 4 C -0.14 -3.43 5.96 71.98 0.43 -3.00 16 5 C 0.12 3.83 4.55 86.38 0.39 4.22 16 6 N -0.59 -26.29 1.98 -826.15 -1.64 -27.93 16 7 C 0.26 14.81 4.07 85.64 0.35 15.16 16 8 C -0.55 -32.79 9.39 25.60 0.24 -32.55 16 9 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 10 C 0.01 0.50 5.46 84.65 0.46 0.96 16 11 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 12 Si 0.97 46.37 29.54 68.60 2.03 48.39 16 13 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 14 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 15 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 16 C 0.52 23.55 6.09 87.66 0.53 24.09 16 17 O -0.61 -34.27 15.90 -3.04 -0.05 -34.32 16 18 C -0.16 -4.93 3.33 -11.54 -0.04 -4.97 16 19 H 0.14 3.50 6.45 -2.39 -0.02 3.48 16 20 C -0.16 -4.43 6.35 -10.07 -0.06 -4.49 16 21 H 0.08 2.90 7.78 -2.39 -0.02 2.88 16 22 C -0.09 -1.68 6.62 31.67 0.21 -1.47 16 23 C -0.12 -1.56 6.91 31.89 0.22 -1.34 16 24 C -0.09 -1.27 5.73 32.35 0.19 -1.08 16 25 C -0.11 -2.78 3.84 -9.39 -0.04 -2.82 16 26 H 0.10 2.77 7.22 -2.39 -0.02 2.75 16 27 H 0.04 1.51 8.08 -2.39 -0.02 1.49 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.02 1.01 5.99 -2.39 -0.01 1.00 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.03 0.85 4.60 -2.39 -0.01 0.84 16 34 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.09 1.70 4.32 -2.39 -0.01 1.69 16 36 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 37 H 0.10 2.53 6.01 -2.39 -0.01 2.52 16 38 H 0.04 1.97 6.05 -2.39 -0.01 1.96 16 39 H -0.01 -0.90 7.42 -2.39 -0.02 -0.91 16 40 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 41 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 45 H 0.09 1.07 7.48 -2.39 -0.02 1.05 16 46 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -77.38 343.87 5.54 -71.84 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.94 Total: 14.80 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 3.97 Total: -15.31 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -1.35 Total: -85.40 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.05 Total: -34.32 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -77.38 5.54 -71.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344494583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.521 kcal (2) G-P(sol) polarization free energy of solvation -77.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds