Wall clock time and date at job start Tue Mar 31 2020 01:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47486 * 2 1 4 4 C 1.52999 * 109.47381 * 240.00099 * 2 1 3 5 5 C 1.50702 * 109.47257 * 59.99865 * 4 2 1 6 6 H 1.08005 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00362 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99902 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00014 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47590 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47239 * 120.00383 * 9 7 5 12 12 H 1.48499 * 109.47434 * 239.99995 * 9 7 5 13 13 C 1.52997 * 109.47117 * 120.00179 * 2 1 3 14 14 N 1.46503 * 109.47110 * 299.99691 * 13 2 1 15 15 C 1.34773 * 119.99865 * 179.97438 * 14 13 2 16 16 O 1.21279 * 120.00542 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99743 * 180.02562 * 15 14 13 18 18 H 1.08995 * 115.55586 * 11.69975 * 17 15 14 19 19 C 1.53087 * 117.50951 * 157.41880 * 17 15 14 20 20 C 1.52560 * 117.53927 * 225.92882 * 17 15 14 21 21 C 1.53870 * 120.82315 * 142.35077 * 20 17 15 22 22 C 1.54989 * 104.06094 * 192.35204 * 21 20 17 23 23 C 1.54918 * 102.81930 * 37.56776 * 22 21 20 24 24 C 1.53481 * 121.09019 * 2.97984 * 20 17 15 25 25 H 1.08999 * 109.47294 * 300.00071 * 1 2 3 26 26 H 1.09007 * 109.46828 * 59.99772 * 1 2 3 27 27 H 1.08997 * 109.47627 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47263 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46741 * 300.00352 * 3 2 1 30 30 H 1.08999 * 109.46912 * 59.99694 * 3 2 1 31 31 H 1.08996 * 109.47692 * 180.02562 * 4 2 1 32 32 H 1.09006 * 109.46957 * 300.00468 * 4 2 1 33 33 H 0.96991 * 119.99836 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47412 * 179.97438 * 13 2 1 35 35 H 1.09004 * 109.47402 * 59.99759 * 13 2 1 36 36 H 0.96994 * 120.00020 * 0.02562 * 14 13 2 37 37 H 1.08994 * 117.51241 * 214.95082 * 19 17 15 38 38 H 1.09000 * 117.51137 * 0.02562 * 19 17 15 39 39 H 1.09001 * 110.51466 * 310.99482 * 21 20 17 40 40 H 1.09005 * 110.50947 * 73.70772 * 21 20 17 41 41 H 1.09006 * 110.74296 * 279.23421 * 22 21 20 42 42 H 1.09004 * 110.89754 * 155.97393 * 22 21 20 43 43 H 1.09005 * 110.48125 * 203.59357 * 23 22 21 44 44 H 1.09008 * 110.47947 * 80.97049 * 23 22 21 45 45 H 1.08998 * 110.06643 * 263.31477 * 24 20 17 46 46 H 1.08999 * 110.07310 * 24.78846 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8704 -0.4821 -3.7320 8 7 2.6257 -1.5520 -3.8527 9 14 1.2483 0.3989 -5.2571 10 1 0.4247 1.5666 -4.8530 11 1 2.4036 0.8647 -6.0656 12 1 0.4226 -0.5339 -6.0655 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8768 -0.4914 3.6695 16 8 2.5740 -1.4775 3.7808 17 6 1.3740 0.2187 4.9000 18 1 0.6007 0.9672 4.7279 19 6 1.3032 -0.5851 6.2009 20 6 2.3756 0.4848 6.0195 21 6 2.3266 1.7939 6.8266 22 6 3.6649 1.8047 7.6083 23 6 4.6639 1.2044 6.5877 24 6 3.8548 0.1050 5.8665 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7216 -1.2490 32 1 1.6766 -1.7489 -1.2493 33 1 2.8594 -1.8837 -4.7336 34 1 3.1299 -0.7217 1.2490 35 1 1.6766 -1.7490 1.2492 36 1 0.9937 0.7578 2.3564 37 1 0.4832 -0.3653 6.8845 38 1 1.6206 -1.6273 6.1667 39 1 2.2678 2.6528 6.1581 40 1 1.4819 1.7864 7.5155 41 1 3.5977 1.1778 8.4974 42 1 3.9507 2.8221 7.8757 43 1 5.5212 0.7710 7.1029 44 1 4.9888 1.9660 5.8788 45 1 4.0424 -0.8630 6.3309 46 1 4.1253 0.0718 4.8111 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345877834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:43 Heat of formation + Delta-G solvation = -49.168383 kcal Electronic energy + Delta-G solvation = -22189.117645 eV Core-core repulsion = 19077.888819 eV Total energy + Delta-G solvation = -3111.228827 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.33117 -38.45059 -36.92355 -34.20056 -33.55237 -32.05534 -28.90910 -27.30890 -26.71783 -26.51297 -25.61942 -23.88597 -22.37548 -21.01474 -20.08836 -19.09058 -18.00677 -16.81801 -16.36586 -15.86581 -15.61969 -15.08465 -14.77594 -14.46732 -14.09232 -13.58821 -13.45190 -13.09213 -13.03254 -12.75384 -12.55739 -12.20864 -12.10607 -12.06001 -11.33127 -11.22567 -11.15052 -11.10611 -11.02698 -10.83887 -10.76303 -10.64960 -10.41343 -10.37916 -10.24209 -9.95779 -9.87899 -9.63224 -9.14586 -8.91335 -8.67174 -8.36617 -6.00431 -4.01677 2.60480 3.29676 3.37385 3.39105 3.42085 3.79174 4.27494 4.43792 4.45318 4.64190 4.70677 4.93505 4.98863 5.10152 5.29939 5.35169 5.43077 5.48696 5.53637 5.60603 5.62360 5.62974 5.69502 5.75444 5.78581 5.90174 5.95328 6.00034 6.17317 6.17740 6.22569 6.23362 6.30417 6.39669 6.58677 6.62809 6.78856 7.06194 7.07160 7.12966 7.63934 7.76063 7.80482 7.98536 8.39942 8.49541 9.03388 9.61525 11.11132 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.034565 B = 0.003136 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.869650 B = 8926.370534 C = 8972.439040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.129 3.871 14 N -0.718 5.718 15 C 0.537 3.463 16 O -0.545 6.545 17 C -0.183 4.183 18 H 0.117 0.883 19 C -0.136 4.136 20 C -0.094 4.094 21 C -0.090 4.090 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.087 4.087 25 H 0.028 0.972 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.259 0.741 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.398 0.602 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.837 7.335 21.432 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.006 3.994 14 N -0.369 5.369 15 C 0.323 3.677 16 O -0.423 6.423 17 C -0.204 4.204 18 H 0.135 0.865 19 C -0.173 4.173 20 C -0.095 4.095 21 C -0.127 4.127 22 C -0.159 4.159 23 C -0.162 4.162 24 C -0.125 4.125 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.233 0.767 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.248 6.507 21.344 22.349 hybrid contribution -0.682 0.752 -1.186 1.561 sum -1.930 7.260 20.158 21.512 Atomic orbital electron populations 1.21757 0.95283 1.01148 1.00214 1.20902 0.95472 0.95856 0.95078 1.21757 1.00512 0.95904 1.00216 1.19093 0.96339 0.95223 0.89505 1.21224 1.31099 1.12024 0.90510 0.92204 1.25019 0.95330 0.95091 0.99107 1.69975 1.37054 1.23032 1.23332 0.86592 0.78603 0.79678 0.83443 1.19800 1.21132 1.21129 1.21614 0.98836 0.95990 0.82960 1.46138 1.53155 1.31866 1.05736 1.19551 0.80231 0.84084 0.83855 1.90679 1.38339 1.26452 1.86816 1.22347 1.04064 1.04407 0.89619 0.86546 1.23036 1.00354 0.97768 0.96141 1.21732 0.92452 0.97286 0.98043 1.21937 0.97980 0.95167 0.97645 1.22464 0.94735 1.00719 0.97982 1.22386 0.97812 0.98127 0.97920 1.21626 0.90872 0.98490 1.01479 0.95253 0.91440 0.93381 0.93399 0.91441 0.95250 0.96367 0.96363 0.93092 0.91923 0.91893 0.76708 0.88127 0.87581 0.90960 0.91411 0.91415 0.91531 0.91602 0.91608 0.91174 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.05 37.15 0.30 -1.94 16 2 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.57 7.65 -34.44 -0.26 -13.83 16 6 H 0.06 1.53 5.68 -52.48 -0.30 1.23 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.13 2.32 4.56 -4.04 -0.02 2.30 16 14 N -0.72 -10.66 4.96 -60.29 -0.30 -10.96 16 15 C 0.54 8.14 6.86 -10.99 -0.08 8.07 16 16 O -0.54 -10.18 15.08 5.56 0.08 -10.09 16 17 C -0.18 -2.08 6.05 -91.95 -0.56 -2.63 16 18 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 19 C -0.14 -1.39 9.75 -26.91 -0.26 -1.65 16 20 C -0.09 -0.98 2.43 -154.25 -0.38 -1.35 16 21 C -0.09 -0.73 6.58 -25.23 -0.17 -0.89 16 22 C -0.12 -0.93 6.91 -24.67 -0.17 -1.10 16 23 C -0.12 -1.14 6.84 -25.00 -0.17 -1.31 16 24 C -0.09 -1.00 5.66 -25.76 -0.15 -1.15 16 25 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 26 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 30 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.40 5.03 6.16 -40.82 -0.25 4.78 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.11 1.25 7.85 -51.93 -0.41 0.84 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 1.01 6.82 -51.93 -0.35 0.65 16 LS Contribution 357.48 15.07 5.39 5.39 Total: -1.00 -30.41 357.48 -9.20 -39.61 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -8.19 Total: 2.30 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -1.90 Total: -16.68 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.44 Total: -36.72 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.41 -9.20 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345877834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.562 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds