Wall clock time and date at job start Tue Mar 31 2020 01:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47486 * 2 1 4 4 C 1.52999 * 109.47381 * 240.00099 * 2 1 3 5 5 C 1.50702 * 109.47257 * 59.99865 * 4 2 1 6 6 H 1.08005 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00362 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99902 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00014 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47590 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47239 * 120.00383 * 9 7 5 12 12 H 1.48499 * 109.47434 * 239.99995 * 9 7 5 13 13 C 1.52997 * 109.47117 * 120.00179 * 2 1 3 14 14 N 1.46503 * 109.47110 * 299.99691 * 13 2 1 15 15 C 1.34773 * 119.99865 * 179.97438 * 14 13 2 16 16 O 1.21279 * 120.00542 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99743 * 180.02562 * 15 14 13 18 18 H 1.08995 * 115.55586 * 11.69975 * 17 15 14 19 19 C 1.53087 * 117.50951 * 157.41880 * 17 15 14 20 20 C 1.52560 * 117.53927 * 225.92882 * 17 15 14 21 21 C 1.53870 * 120.82315 * 142.35077 * 20 17 15 22 22 C 1.54989 * 104.06094 * 192.35204 * 21 20 17 23 23 C 1.54918 * 102.81930 * 37.56776 * 22 21 20 24 24 C 1.53481 * 121.09019 * 2.97984 * 20 17 15 25 25 H 1.08999 * 109.47294 * 300.00071 * 1 2 3 26 26 H 1.09007 * 109.46828 * 59.99772 * 1 2 3 27 27 H 1.08997 * 109.47627 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47263 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46741 * 300.00352 * 3 2 1 30 30 H 1.08999 * 109.46912 * 59.99694 * 3 2 1 31 31 H 1.08996 * 109.47692 * 180.02562 * 4 2 1 32 32 H 1.09006 * 109.46957 * 300.00468 * 4 2 1 33 33 H 0.96991 * 119.99836 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47412 * 179.97438 * 13 2 1 35 35 H 1.09004 * 109.47402 * 59.99759 * 13 2 1 36 36 H 0.96994 * 120.00020 * 0.02562 * 14 13 2 37 37 H 1.08994 * 117.51241 * 214.95082 * 19 17 15 38 38 H 1.09000 * 117.51137 * 0.02562 * 19 17 15 39 39 H 1.09001 * 110.51466 * 310.99482 * 21 20 17 40 40 H 1.09005 * 110.50947 * 73.70772 * 21 20 17 41 41 H 1.09006 * 110.74296 * 279.23421 * 22 21 20 42 42 H 1.09004 * 110.89754 * 155.97393 * 22 21 20 43 43 H 1.09005 * 110.48125 * 203.59357 * 23 22 21 44 44 H 1.09008 * 110.47947 * 80.97049 * 23 22 21 45 45 H 1.08998 * 110.06643 * 263.31477 * 24 20 17 46 46 H 1.08999 * 110.07310 * 24.78846 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8704 -0.4821 -3.7320 8 7 2.6257 -1.5520 -3.8527 9 14 1.2483 0.3989 -5.2571 10 1 0.4247 1.5666 -4.8530 11 1 2.4036 0.8647 -6.0656 12 1 0.4226 -0.5339 -6.0655 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8768 -0.4914 3.6695 16 8 2.5740 -1.4775 3.7808 17 6 1.3740 0.2187 4.9000 18 1 0.6007 0.9672 4.7279 19 6 1.3032 -0.5851 6.2009 20 6 2.3756 0.4848 6.0195 21 6 2.3266 1.7939 6.8266 22 6 3.6649 1.8047 7.6083 23 6 4.6639 1.2044 6.5877 24 6 3.8548 0.1050 5.8665 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7216 -1.2490 32 1 1.6766 -1.7489 -1.2493 33 1 2.8594 -1.8837 -4.7336 34 1 3.1299 -0.7217 1.2490 35 1 1.6766 -1.7490 1.2492 36 1 0.9937 0.7578 2.3564 37 1 0.4832 -0.3653 6.8845 38 1 1.6206 -1.6273 6.1667 39 1 2.2678 2.6528 6.1581 40 1 1.4819 1.7864 7.5155 41 1 3.5977 1.1778 8.4974 42 1 3.9507 2.8221 7.8757 43 1 5.5212 0.7710 7.1029 44 1 4.9888 1.9660 5.8788 45 1 4.0424 -0.8630 6.3309 46 1 4.1253 0.0718 4.8111 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345877834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:43 Heat of formation + Delta-G solvation = -66.086013 kcal Electronic energy + Delta-G solvation = -22189.851249 eV Core-core repulsion = 19077.888819 eV Total energy + Delta-G solvation = -3111.962430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.40990 -39.60173 -38.35324 -35.23935 -35.01277 -33.89951 -29.63828 -29.21495 -28.13332 -27.97931 -26.49614 -25.38721 -23.91016 -21.76967 -21.20000 -20.15818 -19.40306 -18.38591 -17.96211 -16.94341 -16.62297 -16.40635 -16.24779 -15.82714 -15.35638 -15.02813 -14.72146 -14.42382 -14.22557 -13.95974 -13.91435 -13.66762 -13.31508 -13.07556 -12.90044 -12.70543 -12.61369 -12.36251 -12.24516 -12.01761 -11.97533 -11.94989 -11.83358 -11.55874 -11.42211 -11.23432 -11.15441 -10.92106 -10.85058 -10.54884 -10.53545 -10.03561 -8.15219 -6.23293 1.41245 1.42144 1.47639 1.54112 2.19942 2.44250 2.89110 3.19328 3.46805 3.66864 3.83102 3.91367 3.93764 4.05577 4.06953 4.20899 4.27640 4.31888 4.57077 4.67000 4.69615 4.72551 4.75254 4.80858 4.89486 4.91535 4.94683 5.03834 5.07740 5.09847 5.10718 5.13645 5.23495 5.28480 5.38210 5.40780 5.46880 5.48084 5.49457 5.51809 5.56369 5.78229 5.88588 6.28854 6.61812 6.92169 7.29586 7.44707 8.97713 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.034565 B = 0.003136 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.869650 B = 8926.370534 C = 8972.439040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.121 4.121 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.255 1.255 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.143 3.857 14 N -0.707 5.707 15 C 0.531 3.469 16 O -0.588 6.588 17 C -0.187 4.187 18 H 0.150 0.850 19 C -0.130 4.130 20 C -0.093 4.093 21 C -0.084 4.084 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.093 4.093 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.070 0.930 31 H -0.016 1.016 32 H -0.016 1.016 33 H 0.260 0.740 34 H 0.041 0.959 35 H 0.043 0.957 36 H 0.413 0.587 37 H 0.134 0.866 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.947 10.427 23.337 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.179 1.179 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.019 3.981 14 N -0.359 5.359 15 C 0.320 3.680 16 O -0.469 6.469 17 C -0.208 4.208 18 H 0.168 0.832 19 C -0.167 4.167 20 C -0.094 4.094 21 C -0.121 4.121 22 C -0.154 4.154 23 C -0.161 4.161 24 C -0.130 4.130 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.002 0.998 32 H 0.003 0.997 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.251 0.749 37 H 0.152 0.848 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.386 9.640 23.267 25.411 hybrid contribution 0.052 -0.302 -1.745 1.772 sum -3.334 9.338 21.522 23.696 Atomic orbital electron populations 1.21687 0.93441 1.00945 1.01735 1.20708 0.96817 0.96307 0.92672 1.21686 0.99797 0.94595 1.01708 1.18973 0.94168 0.94170 0.92458 1.21623 1.30364 1.12052 0.90997 0.90800 1.25975 0.95663 0.95876 1.02816 1.70134 1.38891 1.25016 1.24058 0.85468 0.78050 0.78838 0.79122 1.17901 1.21061 1.21041 1.21173 0.97491 0.95302 0.84165 1.45923 1.53204 1.32058 1.04694 1.20324 0.79263 0.83602 0.84848 1.90665 1.40227 1.28584 1.87432 1.22393 1.05368 1.05244 0.87783 0.83213 1.23119 1.01237 0.96541 0.95819 1.21867 0.91228 0.98697 0.97616 1.21975 0.98889 0.93555 0.97686 1.22476 0.93859 1.01617 0.97478 1.22385 0.98215 0.97277 0.98268 1.21622 0.92902 0.99007 0.99493 0.91077 0.92440 0.94523 0.94615 0.92421 0.91143 0.99771 0.99721 0.93168 0.94061 0.93895 0.74893 0.84807 0.89922 0.90273 0.89285 0.90812 0.89858 0.91183 0.91762 0.92559 0.94409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 2 C -0.06 -2.48 0.54 -52.18 -0.03 -2.51 16 3 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.51 -27.62 7.65 25.60 0.20 -27.43 16 6 H 0.07 3.71 5.68 -2.91 -0.02 3.70 16 7 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 8 N -0.94 -57.67 13.29 21.45 0.28 -57.38 16 9 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 10 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 13 C 0.14 5.30 4.56 86.38 0.39 5.69 16 14 N -0.71 -20.19 4.96 -463.05 -2.30 -22.48 16 15 C 0.53 15.89 6.86 87.66 0.60 16.49 16 16 O -0.59 -22.88 15.08 -3.03 -0.05 -22.93 16 17 C -0.19 -3.78 6.05 -11.66 -0.07 -3.85 16 18 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 19 C -0.13 -2.38 9.75 30.48 0.30 -2.08 16 20 C -0.09 -1.74 2.43 -52.02 -0.13 -1.86 16 21 C -0.08 -1.03 6.58 31.57 0.21 -0.82 16 22 C -0.12 -1.42 6.91 31.93 0.22 -1.20 16 23 C -0.12 -2.11 6.84 31.72 0.22 -1.89 16 24 C -0.09 -2.14 5.66 31.22 0.18 -1.96 16 25 H 0.07 1.80 6.86 -2.39 -0.02 1.78 16 26 H 0.06 2.07 6.62 -2.38 -0.02 2.05 16 27 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 2.08 6.62 -2.39 -0.02 2.06 16 30 H 0.07 1.80 6.86 -2.39 -0.02 1.78 16 31 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 32 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 33 H 0.26 15.07 8.31 -92.72 -0.77 14.30 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.41 9.09 6.16 -92.71 -0.57 8.51 16 37 H 0.13 1.56 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.93 7.85 -2.39 -0.02 1.91 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 0.77 8.11 -2.38 -0.02 0.75 16 41 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.04 1.11 6.82 -2.39 -0.02 1.09 16 Total: -1.00 -70.17 357.48 4.17 -66.00 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.37 Total: 17.20 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 3.83 Total: -26.17 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -2.01 Total: -79.87 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.05 Total: -22.93 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -70.17 4.17 -66.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345877834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.084 kcal (2) G-P(sol) polarization free energy of solvation -70.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds