Wall clock time and date at job start Tue Mar 31 2020 01:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.52996 * 109.46972 * 239.99860 * 2 1 3 5 5 C 1.50703 * 109.47130 * 60.00278 * 4 2 1 6 6 H 1.07994 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99896 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99699 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47182 * 90.00248 * 9 7 5 11 11 H 1.48498 * 109.47091 * 210.00192 * 9 7 5 12 12 H 1.48505 * 109.47095 * 329.99725 * 9 7 5 13 13 C 1.52997 * 109.46817 * 120.00127 * 2 1 3 14 14 N 1.46506 * 109.47289 * 299.99814 * 13 2 1 15 15 C 1.34774 * 120.00072 * 180.02562 * 14 13 2 16 16 O 1.21284 * 120.00066 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99838 * 180.02562 * 15 14 13 18 18 H 1.09002 * 115.56121 * 34.32609 * 17 15 14 19 19 C 1.53087 * 117.51051 * 248.60766 * 17 15 14 20 20 C 1.52557 * 117.51117 * 180.11188 * 17 15 14 21 21 C 1.53873 * 120.82212 * 357.24836 * 20 17 15 22 22 C 1.54996 * 104.05965 * 192.35445 * 21 20 17 23 23 C 1.54921 * 102.81984 * 37.57016 * 22 21 20 24 24 C 1.53481 * 121.08930 * 217.88007 * 20 17 15 25 25 H 1.09002 * 109.47070 * 300.00053 * 1 2 3 26 26 H 1.09000 * 109.46986 * 59.99882 * 1 2 3 27 27 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47140 * 300.00024 * 3 2 1 30 30 H 1.09002 * 109.46777 * 59.99451 * 3 2 1 31 31 H 1.09001 * 109.46997 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.47298 * 300.00176 * 4 2 1 33 33 H 0.97007 * 119.99539 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47289 * 179.97438 * 13 2 1 35 35 H 1.09004 * 109.47261 * 59.99941 * 13 2 1 36 36 H 0.97001 * 119.99251 * 0.02562 * 14 13 2 37 37 H 1.09005 * 117.51148 * 359.97438 * 19 17 15 38 38 H 1.09005 * 117.51270 * 145.04263 * 19 17 15 39 39 H 1.08998 * 110.51380 * 310.99816 * 21 20 17 40 40 H 1.09002 * 110.50990 * 73.71150 * 21 20 17 41 41 H 1.08995 * 110.74354 * 279.23707 * 22 21 20 42 42 H 1.08998 * 110.89385 * 155.97209 * 22 21 20 43 43 H 1.09001 * 110.48216 * 203.59252 * 23 22 21 44 44 H 1.09004 * 110.59333 * 81.01794 * 23 22 21 45 45 H 1.08997 * 110.06834 * 263.31294 * 24 20 17 46 46 H 1.08995 * 110.07528 * 24.78826 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6272 -1.5510 -3.8525 9 14 1.2492 0.3993 -5.2572 10 1 2.2276 1.4409 -5.6608 11 1 1.0845 -0.5795 -6.3617 12 1 -0.0591 1.0369 -4.9616 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4455 15 6 1.8776 -0.4909 3.6695 16 8 2.5756 -1.4765 3.7808 17 6 1.3748 0.2192 4.9000 18 1 0.3821 0.6615 4.8151 19 6 2.4042 0.9531 5.7632 20 6 1.7803 -0.3488 6.2565 21 6 2.6174 -1.6362 6.3539 22 6 2.5303 -2.0297 7.8505 23 6 1.0708 -1.6626 8.2181 24 6 0.7992 -0.3590 7.4368 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7217 -1.2490 32 1 1.6766 -1.7490 -1.2492 33 1 2.8616 -1.8824 -4.7336 34 1 3.1299 -0.7217 1.2491 35 1 1.6766 -1.7490 1.2492 36 1 0.9937 0.7578 2.3564 37 1 3.4452 0.9218 5.4413 38 1 2.0888 1.8780 6.2461 39 1 2.1889 -2.4187 5.7277 40 1 3.6516 -1.4417 6.0697 41 1 3.2358 -1.4485 8.4442 42 1 2.7047 -3.0975 7.9825 43 1 0.9792 -1.4906 9.2905 44 1 0.3858 -2.4482 7.8989 45 1 0.9760 0.5048 8.0776 46 1 -0.2272 -0.3485 7.0702 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345877836.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:46 Heat of formation + Delta-G solvation = -63.941676 kcal Electronic energy + Delta-G solvation = -22113.320985 eV Core-core repulsion = 19001.451540 eV Total energy + Delta-G solvation = -3111.869445 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.38218 -39.58157 -38.30474 -35.23110 -35.04402 -33.86999 -29.57406 -29.20983 -28.12499 -27.97357 -26.42649 -25.34538 -23.99841 -21.57464 -21.34334 -20.14519 -19.41560 -18.38077 -17.97150 -16.85272 -16.52082 -16.42219 -16.19123 -15.73218 -15.30071 -15.07929 -14.69603 -14.42676 -14.30586 -13.95197 -13.92595 -13.65839 -13.34182 -13.07607 -12.87452 -12.72724 -12.59925 -12.34937 -12.23605 -11.99746 -11.98415 -11.94597 -11.73625 -11.55160 -11.39473 -11.25023 -11.07692 -10.89501 -10.85102 -10.52547 -10.38967 -10.02503 -8.15014 -6.23131 1.42003 1.42573 1.52983 1.55212 2.20195 2.44353 2.83423 3.19428 3.49936 3.67558 3.84525 3.94446 3.97278 4.06604 4.10516 4.21643 4.31046 4.36085 4.62768 4.67858 4.70673 4.75324 4.78751 4.79694 4.91736 4.94244 4.95516 5.06677 5.09438 5.10437 5.11220 5.13625 5.24723 5.36772 5.40068 5.45486 5.47982 5.48559 5.52048 5.53751 5.58177 5.78779 5.88711 6.29101 6.63847 6.92190 7.32321 7.44814 8.97670 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.044097 B = 0.002998 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.810037 B = 9336.560919 C = 9568.745863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.258 1.258 13 C 0.143 3.857 14 N -0.707 5.707 15 C 0.529 3.471 16 O -0.582 6.582 17 C -0.186 4.186 18 H 0.150 0.850 19 C -0.127 4.127 20 C -0.101 4.101 21 C -0.080 4.080 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.084 4.084 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.056 0.944 30 H 0.070 0.930 31 H -0.016 1.016 32 H -0.016 1.016 33 H 0.260 0.740 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.413 0.587 37 H 0.084 0.916 38 H 0.136 0.864 39 H 0.051 0.949 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.060 0.940 45 H 0.088 0.912 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.718 7.670 23.933 25.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.182 1.182 13 C 0.019 3.981 14 N -0.359 5.359 15 C 0.317 3.683 16 O -0.462 6.462 17 C -0.207 4.207 18 H 0.168 0.832 19 C -0.164 4.164 20 C -0.102 4.102 21 C -0.118 4.118 22 C -0.162 4.162 23 C -0.159 4.159 24 C -0.121 4.121 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.002 0.998 32 H 0.003 0.997 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.251 0.749 37 H 0.102 0.898 38 H 0.154 0.846 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.107 0.893 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.166 6.871 23.868 25.369 hybrid contribution 0.092 -0.102 -1.763 1.768 sum -5.074 6.770 22.105 23.669 Atomic orbital electron populations 1.21688 0.93519 1.00898 1.01706 1.20702 0.96748 0.96325 0.92692 1.21686 0.99809 0.94579 1.01721 1.18971 0.94171 0.94154 0.92466 1.21595 1.30460 1.12076 0.91028 0.90831 1.25975 0.95664 0.95855 1.02808 1.70130 1.38836 1.25005 1.24114 0.85522 0.79219 0.78100 0.78671 1.20114 1.21576 1.18239 1.21165 0.97528 0.95252 0.84166 1.45959 1.53273 1.32004 1.04676 1.20397 0.79336 0.83736 0.84782 1.90676 1.40085 1.28280 1.87209 1.22352 1.02673 1.06410 0.89251 0.83216 1.23124 0.96817 0.96565 0.99908 1.21889 1.00301 0.95135 0.92864 1.21774 0.98115 0.95491 0.96381 1.22547 0.97755 1.00995 0.94914 1.22355 0.95851 0.97086 1.00591 1.21695 0.97584 0.98942 0.93851 0.91073 0.92502 0.94578 0.94590 0.92469 0.91079 0.99759 0.99749 0.93165 0.93979 0.93972 0.74917 0.89761 0.84615 0.93054 0.93730 0.90716 0.91779 0.89774 0.92108 0.89327 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 2 C -0.06 -2.45 0.54 -52.18 -0.03 -2.48 16 3 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.51 -27.68 7.65 25.60 0.20 -27.49 16 6 H 0.07 3.69 5.68 -2.91 -0.02 3.68 16 7 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 8 N -0.94 -57.66 13.29 21.45 0.28 -57.38 16 9 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 13 C 0.14 5.25 4.56 86.38 0.39 5.65 16 14 N -0.71 -19.86 4.96 -463.05 -2.30 -22.16 16 15 C 0.53 15.55 7.61 87.66 0.67 16.22 16 16 O -0.58 -22.18 13.70 -3.04 -0.04 -22.22 16 17 C -0.19 -3.69 6.06 -11.66 -0.07 -3.76 16 18 H 0.15 2.07 8.14 -2.39 -0.02 2.06 16 19 C -0.13 -2.11 9.94 30.48 0.30 -1.81 16 20 C -0.10 -1.93 2.45 -52.02 -0.13 -2.06 16 21 C -0.08 -1.94 4.77 31.57 0.15 -1.79 16 22 C -0.12 -2.18 6.91 31.93 0.22 -1.96 16 23 C -0.12 -1.70 6.84 31.72 0.22 -1.48 16 24 C -0.08 -1.12 6.55 31.23 0.20 -0.91 16 25 H 0.07 1.80 6.86 -2.39 -0.02 1.78 16 26 H 0.06 2.05 6.62 -2.39 -0.02 2.03 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 2.05 6.62 -2.39 -0.02 2.03 16 30 H 0.07 1.80 6.86 -2.39 -0.02 1.78 16 31 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 32 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 33 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.41 8.95 6.16 -92.71 -0.57 8.38 16 37 H 0.08 1.68 8.14 -2.38 -0.02 1.67 16 38 H 0.14 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.05 1.55 6.97 -2.39 -0.02 1.54 16 40 H 0.04 1.23 8.00 -2.39 -0.02 1.21 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 45 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -69.57 356.48 4.21 -65.36 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.37 Total: 17.24 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: 3.87 Total: -26.57 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -2.01 Total: -79.54 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.04 Total: -22.22 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -69.57 4.21 -65.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345877836.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.420 kcal (2) G-P(sol) polarization free energy of solvation -69.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds