Wall clock time and date at job start Tue Mar 31 2020 01:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47111 * 2 1 4 4 C 1.53003 * 109.47068 * 120.00032 * 2 1 3 5 5 C 1.50703 * 109.47038 * 299.99978 * 4 2 1 6 6 H 1.08006 * 120.00159 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00120 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00089 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99938 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 269.99556 * 9 7 5 11 11 H 1.48503 * 109.47261 * 149.99737 * 9 7 5 12 12 H 1.48500 * 109.47454 * 29.99730 * 9 7 5 13 13 C 1.52997 * 109.47258 * 239.99770 * 2 1 3 14 14 N 1.46504 * 109.46858 * 60.00017 * 13 2 1 15 15 C 1.34775 * 119.99669 * 180.02562 * 14 13 2 16 16 O 1.21286 * 120.00440 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99903 * 179.97438 * 15 14 13 18 18 C 1.53002 * 109.47418 * 179.97438 * 17 15 14 19 19 H 1.09004 * 109.35409 * 55.27528 * 18 17 15 20 20 C 1.50072 * 109.35696 * 295.69251 * 18 17 15 21 21 C 1.29440 * 124.07537 * 222.65693 * 20 18 17 22 22 C 1.50071 * 124.07055 * 0.47186 * 21 20 18 23 23 C 1.53017 * 110.15165 * 342.86391 * 22 21 20 24 24 C 1.53019 * 109.36062 * 175.00038 * 18 17 15 25 25 H 1.09000 * 109.47249 * 300.00051 * 1 2 3 26 26 H 1.08996 * 109.46941 * 60.00217 * 1 2 3 27 27 H 1.08996 * 109.47114 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47108 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47041 * 299.99721 * 3 2 1 30 30 H 1.09000 * 109.47105 * 59.99861 * 3 2 1 31 31 H 1.09003 * 109.46825 * 180.02562 * 4 2 1 32 32 H 1.08996 * 109.47396 * 59.99875 * 4 2 1 33 33 H 0.96998 * 119.99255 * 0.02562 * 8 7 5 34 34 H 1.08996 * 109.47435 * 179.97438 * 13 2 1 35 35 H 1.09004 * 109.47044 * 300.00276 * 13 2 1 36 36 H 0.96994 * 120.00292 * 0.02562 * 14 13 2 37 37 H 1.08998 * 109.47507 * 300.00158 * 17 15 14 38 38 H 1.09004 * 109.46858 * 60.00182 * 17 15 14 39 39 H 1.07994 * 117.96132 * 42.63865 * 20 18 17 40 40 H 1.07990 * 117.96247 * 180.44570 * 21 20 18 41 41 H 1.09004 * 109.35389 * 222.65432 * 22 21 20 42 42 H 1.09009 * 109.35775 * 103.07847 * 22 21 20 43 43 H 1.08999 * 109.64417 * 289.75542 * 23 22 21 44 44 H 1.09005 * 109.81679 * 169.22495 * 23 22 21 45 45 H 1.08998 * 109.64490 * 289.33106 * 24 18 17 46 46 H 1.08999 * 109.64153 * 49.74759 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5377 -0.0108 2.4797 6 1 0.9171 0.8676 2.3807 7 6 1.8711 -0.4816 3.7320 8 7 2.6272 -1.5508 3.8528 9 14 1.2478 0.3987 5.2572 10 1 2.2253 1.4411 5.6613 11 1 1.0835 -0.5805 6.3615 12 1 -0.0608 1.0352 4.9613 13 6 2.0400 -0.7213 -1.2492 14 7 1.5517 -0.0307 -2.4454 15 6 1.8769 -0.4915 -3.6694 16 8 2.5734 -1.4781 -3.7807 17 6 1.3741 0.2185 -4.8999 18 6 1.8842 -0.5026 -6.1492 19 1 1.5910 -1.5516 -6.1058 20 6 3.3811 -0.4091 -6.2012 21 6 4.0550 -0.1568 -7.2771 22 6 3.4331 0.0874 -8.6209 23 6 1.9871 -0.4130 -8.6312 24 6 1.2721 0.1440 -7.3937 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7209 1.2495 32 1 1.6767 -1.7489 1.2493 33 1 2.9505 -2.0080 3.0607 34 1 3.1300 -0.7209 -1.2494 35 1 1.6767 -1.7490 -1.2492 36 1 0.9943 0.7582 -2.3564 37 1 0.2841 0.2186 -4.8996 38 1 1.7374 1.2463 -4.9003 39 1 3.9301 -0.5614 -5.2838 40 1 5.1317 -0.1194 -7.2031 41 1 4.0038 -0.4411 -9.3845 42 1 3.4474 1.1557 -8.8369 43 1 1.9761 -1.5025 -8.6014 44 1 1.4825 -0.0661 -9.5330 45 1 0.2099 -0.0946 -7.4458 46 1 1.4028 1.2251 -7.3467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345882545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:16 Heat of formation + Delta-G solvation = -84.673662 kcal Electronic energy + Delta-G solvation = -21944.439026 eV Core-core repulsion = 18831.670575 eV Total energy + Delta-G solvation = -3112.768451 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.16064 -39.48192 -38.52199 -35.45633 -34.05260 -33.47813 -31.86972 -29.11559 -28.50226 -28.06074 -27.01727 -24.90078 -23.28038 -22.94070 -21.31891 -20.16827 -18.84451 -18.52832 -18.01122 -17.07709 -16.72167 -16.54536 -15.88384 -15.57222 -15.49076 -15.08366 -14.93920 -14.50360 -14.31560 -13.90344 -13.71641 -13.69826 -13.51841 -13.20496 -13.07123 -12.96406 -12.82160 -12.64307 -12.39982 -12.36158 -11.93218 -11.88466 -11.71597 -11.64894 -11.42601 -11.28156 -11.05014 -10.72805 -10.50952 -10.46246 -10.08246 -9.87894 -8.61149 -6.30275 1.40963 1.53747 1.62882 1.68537 1.78898 2.25044 2.60307 3.22346 3.68986 3.80951 3.84974 3.92465 3.96715 4.04047 4.10097 4.29683 4.40722 4.50153 4.53112 4.57229 4.60544 4.68969 4.72058 4.81247 4.84663 4.87605 4.91548 4.97544 5.00794 5.08478 5.10954 5.23450 5.24648 5.31546 5.31933 5.42660 5.45528 5.49194 5.51776 5.63558 5.81064 6.07128 6.09133 6.26192 6.60042 6.64014 7.30366 7.50896 8.78791 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.047553 B = 0.002822 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.674626 B = 9920.480965 C =10106.226074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.059 4.059 3 C -0.120 4.120 4 C 0.022 3.978 5 C -0.587 4.587 6 H 0.066 0.934 7 C -0.048 4.048 8 N -0.948 5.948 9 Si 1.117 2.883 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.263 1.263 13 C 0.142 3.858 14 N -0.712 5.712 15 C 0.501 3.499 16 O -0.588 6.588 17 C -0.124 4.124 18 C -0.042 4.042 19 H 0.065 0.935 20 C -0.155 4.155 21 C -0.165 4.165 22 C -0.089 4.089 23 C -0.121 4.121 24 C -0.110 4.110 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.055 0.945 31 H -0.021 1.021 32 H -0.020 1.020 33 H 0.252 0.748 34 H 0.040 0.960 35 H 0.042 0.958 36 H 0.414 0.586 37 H 0.126 0.874 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.709 9.275 -24.743 27.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.059 4.059 3 C -0.178 4.178 4 C -0.015 4.015 5 C -0.625 4.625 6 H 0.084 0.916 7 C -0.244 4.244 8 N -0.587 5.587 9 Si 0.939 3.061 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.187 1.187 13 C 0.017 3.983 14 N -0.365 5.365 15 C 0.290 3.710 16 O -0.469 6.469 17 C -0.163 4.163 18 C -0.060 4.060 19 H 0.083 0.917 20 C -0.173 4.173 21 C -0.183 4.183 22 C -0.126 4.126 23 C -0.159 4.159 24 C -0.147 4.147 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.074 0.926 31 H -0.003 1.003 32 H -0.002 1.002 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.252 0.748 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.205 8.562 -23.179 25.252 hybrid contribution 0.634 -0.587 -0.889 1.240 sum -4.571 7.976 -24.069 25.764 Atomic orbital electron populations 1.21681 0.93316 1.00879 1.01869 1.20588 0.96873 0.96241 0.92203 1.21684 0.99657 0.94556 1.01871 1.19165 0.93793 0.94315 0.94230 1.22378 1.33706 1.14177 0.92273 0.91580 1.27377 0.95013 0.96537 1.05465 1.70889 1.34982 1.20111 1.32670 0.82933 0.76677 0.74675 0.71799 1.20132 1.21644 1.18740 1.21135 0.97403 0.95284 0.84451 1.46035 1.53461 1.32205 1.04842 1.21539 0.79483 0.84281 0.85705 1.90683 1.40003 1.28732 1.87448 1.21773 1.04016 1.00960 0.89558 1.19823 0.92169 0.99599 0.94447 0.91725 1.22138 0.96576 1.00714 0.97902 1.22243 0.99442 1.01209 0.95453 1.20490 0.96003 1.02114 0.93961 1.21621 0.95244 1.00379 0.98636 1.21660 0.99929 1.00738 0.92386 0.92655 0.90649 0.94664 0.94788 0.90716 0.92582 1.00273 1.00174 0.93881 0.94194 0.94006 0.74793 0.85619 0.86661 0.90469 0.88529 0.90584 0.89693 0.92862 0.89635 0.89970 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 2 C -0.06 -2.22 0.54 -52.18 -0.03 -2.25 16 3 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 4 C 0.02 1.15 3.35 29.85 0.10 1.25 16 5 C -0.59 -31.89 7.65 25.60 0.20 -31.69 16 6 H 0.07 3.38 5.68 -2.91 -0.02 3.36 16 7 C -0.05 -2.74 5.46 84.65 0.46 -2.28 16 8 N -0.95 -59.82 13.65 21.45 0.29 -59.52 16 9 Si 1.12 49.88 29.90 68.60 2.05 51.94 16 10 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 13 C 0.14 5.10 4.56 86.38 0.39 5.49 16 14 N -0.71 -18.94 4.96 -463.05 -2.30 -21.24 16 15 C 0.50 13.76 7.46 87.66 0.65 14.41 16 16 O -0.59 -21.92 14.25 -3.05 -0.04 -21.96 16 17 C -0.12 -2.10 5.14 29.85 0.15 -1.94 16 18 C -0.04 -0.81 2.12 -11.73 -0.02 -0.83 16 19 H 0.06 1.53 7.96 -2.38 -0.02 1.51 16 20 C -0.16 -3.67 8.41 27.04 0.23 -3.44 16 21 C -0.17 -3.28 9.80 27.04 0.27 -3.01 16 22 C -0.09 -1.23 6.12 29.66 0.18 -1.05 16 23 C -0.12 -1.53 6.01 30.73 0.18 -1.35 16 24 C -0.11 -1.38 5.30 30.73 0.16 -1.21 16 25 H 0.05 2.01 6.62 -2.39 -0.02 1.99 16 26 H 0.07 1.84 6.86 -2.39 -0.02 1.83 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.85 6.86 -2.39 -0.02 1.83 16 30 H 0.06 2.04 6.62 -2.39 -0.02 2.02 16 31 H -0.02 -1.19 8.01 -2.39 -0.02 -1.21 16 32 H -0.02 -1.13 8.01 -2.39 -0.02 -1.15 16 33 H 0.25 16.28 7.22 -92.71 -0.67 15.61 16 34 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 35 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.41 8.20 6.16 -92.71 -0.57 7.63 16 37 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.08 2.34 6.47 -2.91 -0.02 2.32 16 40 H 0.10 1.89 8.06 -2.92 -0.02 1.87 16 41 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.05 0.79 8.12 -2.39 -0.02 0.78 16 44 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.08 0.82 8.10 -2.39 -0.02 0.80 16 Total: -1.00 -72.35 354.27 4.56 -67.80 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.47 Total: 17.80 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 4.09 Total: -34.81 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -2.00 Total: -80.76 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.04 Total: -21.96 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 2.05 Total: 51.94 kcal Total: -72.35 4.56 -67.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345882545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.878 kcal (2) G-P(sol) polarization free energy of solvation -72.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds