Wall clock time and date at job start Tue Mar 31 2020 01:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47453 * 2 1 4 4 C 1.53007 * 109.46825 * 239.99896 * 2 1 3 5 5 C 1.50700 * 109.46795 * 60.00318 * 4 2 1 6 6 H 1.07995 * 120.00330 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99894 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99442 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00270 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46951 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47101 * 119.99956 * 9 7 5 12 12 H 1.48499 * 109.47303 * 240.00224 * 9 7 5 13 13 C 1.53003 * 109.46735 * 120.00531 * 2 1 3 14 14 N 1.46496 * 109.46905 * 299.99175 * 13 2 1 15 15 C 1.34782 * 120.00006 * 180.02562 * 14 13 2 16 16 O 1.21282 * 119.99478 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99916 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.46856 * 180.02562 * 17 15 14 19 19 H 1.09002 * 109.35890 * 304.71835 * 18 17 15 20 20 C 1.50070 * 109.24925 * 64.37712 * 18 17 15 21 21 C 1.29172 * 123.99416 * 137.22472 * 20 18 17 22 22 C 1.50070 * 124.28199 * 359.61667 * 21 20 18 23 23 C 1.53024 * 110.03521 * 17.04512 * 22 21 20 24 24 C 1.53019 * 109.35813 * 185.00042 * 18 17 15 25 25 H 1.09001 * 109.46719 * 300.00481 * 1 2 3 26 26 H 1.08999 * 109.46436 * 59.99346 * 1 2 3 27 27 H 1.08990 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46904 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47212 * 300.00108 * 3 2 1 30 30 H 1.09001 * 109.46814 * 59.99929 * 3 2 1 31 31 H 1.09000 * 109.46775 * 180.02562 * 4 2 1 32 32 H 1.08994 * 109.46907 * 300.00203 * 4 2 1 33 33 H 0.97006 * 119.99532 * 179.97438 * 8 7 5 34 34 H 1.09008 * 109.46537 * 179.97438 * 13 2 1 35 35 H 1.08991 * 109.47194 * 59.99776 * 13 2 1 36 36 H 0.97008 * 120.00354 * 0.02562 * 14 13 2 37 37 H 1.09000 * 109.47034 * 60.00144 * 17 15 14 38 38 H 1.09004 * 109.47158 * 299.99527 * 17 15 14 39 39 H 1.07999 * 117.96134 * 317.29083 * 20 18 17 40 40 H 1.08001 * 117.75277 * 179.61802 * 21 20 18 41 41 H 1.09002 * 109.35777 * 256.90530 * 22 21 20 42 42 H 1.08998 * 109.35386 * 137.18228 * 22 21 20 43 43 H 1.08995 * 109.64445 * 70.32309 * 23 22 21 44 44 H 1.08999 * 109.63818 * 190.73904 * 23 22 21 45 45 H 1.08997 * 109.64626 * 70.81004 * 24 18 17 46 46 H 1.09001 * 109.81915 * 310.28136 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6271 -1.5509 -3.8526 9 14 1.2479 0.3986 -5.2572 10 1 0.4226 1.5651 -4.8530 11 1 2.4027 0.8662 -6.0655 12 1 0.4236 -0.5352 -6.0656 13 6 2.0400 -0.7214 1.2492 14 7 1.5518 -0.0308 2.4454 15 6 1.8777 -0.4910 3.6695 16 8 2.5748 -1.4772 3.7807 17 6 1.3750 0.2191 4.9000 18 6 1.8860 -0.5014 6.1492 19 1 1.5934 -1.5505 6.1063 20 6 3.3827 -0.4041 6.1990 21 6 4.0545 -0.1484 7.2722 22 6 3.4370 0.0956 8.6180 23 6 1.9922 -0.4084 8.6310 24 6 1.2741 0.1452 7.3937 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4423 -0.0005 29 1 1.6769 1.9563 -0.8899 30 1 1.6768 1.9562 0.8900 31 1 3.1300 -0.7217 -1.2491 32 1 1.6766 -1.7489 -1.2493 33 1 2.8614 -1.8823 -4.7337 34 1 3.1301 -0.7218 1.2490 35 1 1.6766 -1.7489 1.2491 36 1 0.9939 0.7579 2.3564 37 1 0.2850 0.2184 4.9000 38 1 1.7378 1.2470 4.9000 39 1 3.9309 -0.5562 5.2809 40 1 5.1310 -0.1079 7.1941 41 1 3.4488 1.1642 8.8326 42 1 4.0107 -0.4324 9.3797 43 1 1.9839 -1.4980 8.6026 44 1 1.4914 -0.0617 9.5349 45 1 0.2125 -0.0961 7.4477 46 1 1.4021 1.2268 7.3491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345882557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:21 Heat of formation + Delta-G solvation = -62.898879 kcal Electronic energy + Delta-G solvation = -21906.688467 eV Core-core repulsion = 18794.864241 eV Total energy + Delta-G solvation = -3111.824226 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.98555 -38.43686 -37.00165 -33.57686 -32.78382 -32.03085 -31.13943 -27.98948 -27.01427 -26.52177 -25.69193 -23.11219 -22.45195 -21.98394 -20.07593 -18.26149 -18.05107 -16.77810 -16.38620 -16.06357 -15.47264 -15.29693 -14.54594 -14.34639 -14.09502 -13.89824 -13.36094 -13.14495 -12.93426 -12.81623 -12.76672 -12.40724 -12.20955 -12.13540 -12.06620 -11.59211 -11.14884 -11.05139 -11.03031 -10.84515 -10.70060 -10.65345 -10.41026 -10.25446 -10.23820 -9.88511 -9.63311 -9.14571 -9.04995 -8.91731 -8.68395 -8.37103 -6.00899 -4.02159 2.30328 2.86695 3.29327 3.37352 3.39469 3.48839 4.44306 4.52217 4.55325 4.64596 4.89549 5.00653 5.13570 5.28611 5.29392 5.34706 5.40983 5.47762 5.52681 5.54547 5.62299 5.63773 5.71649 5.74448 5.75479 5.90698 6.16321 6.16684 6.21237 6.22291 6.29789 6.39037 6.57317 6.62066 6.68336 6.78326 6.94517 7.05811 7.06612 7.12553 7.63496 7.75591 7.78657 7.98066 8.39433 8.48484 9.02955 9.61060 11.10625 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.047582 B = 0.002813 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.317980 B = 9949.721422 C =10134.889075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.128 3.872 14 N -0.723 5.723 15 C 0.505 3.495 16 O -0.544 6.544 17 C -0.135 4.135 18 C -0.043 4.043 19 H 0.088 0.912 20 C -0.131 4.131 21 C -0.174 4.174 22 C -0.088 4.088 23 C -0.120 4.120 24 C -0.116 4.116 25 H 0.029 0.971 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.029 0.971 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.259 0.741 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.398 0.602 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.194 5.941 22.251 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.005 3.995 14 N -0.375 5.375 15 C 0.291 3.709 16 O -0.422 6.422 17 C -0.175 4.175 18 C -0.062 4.062 19 H 0.106 0.894 20 C -0.149 4.149 21 C -0.192 4.192 22 C -0.125 4.125 23 C -0.158 4.158 24 C -0.153 4.153 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.233 0.767 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.604 5.115 22.178 22.909 hybrid contribution -0.421 0.739 -1.165 1.443 sum -3.025 5.854 21.013 22.022 Atomic orbital electron populations 1.21758 0.95304 1.01128 1.00213 1.20901 0.95445 0.95832 0.95114 1.21756 1.00510 0.95921 1.00211 1.19098 0.96349 0.95231 0.89540 1.21219 1.31063 1.12054 0.90509 0.92209 1.25024 0.95333 0.95096 0.99118 1.69981 1.37022 1.23058 1.23330 0.86591 0.78609 0.79669 0.83444 1.19804 1.21132 1.21124 1.21600 0.98826 0.95990 0.83078 1.46261 1.53254 1.31983 1.06014 1.20637 0.80623 0.84842 0.84800 1.90689 1.38077 1.26521 1.86869 1.21717 1.02251 1.00776 0.92738 1.19831 0.93188 1.00431 0.92706 0.89428 1.22161 0.95498 0.98443 0.98770 1.21926 0.99430 1.03264 0.94624 1.20423 0.95657 1.00951 0.95508 1.21590 0.95480 1.00994 0.97702 1.21666 0.99266 1.00345 0.94055 0.95241 0.91457 0.93396 0.93411 0.91457 0.95243 0.96371 0.96365 0.93093 0.91961 0.91934 0.76746 0.88885 0.89024 0.86953 0.88328 0.91280 0.91492 0.91727 0.91815 0.91626 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 2 C -0.07 -1.36 0.54 -154.50 -0.08 -1.45 16 3 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.51 7.65 -34.44 -0.26 -13.77 16 6 H 0.06 1.52 5.68 -52.49 -0.30 1.23 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 13 C 0.13 2.25 4.56 -4.04 -0.02 2.24 16 14 N -0.72 -10.20 4.96 -60.29 -0.30 -10.50 16 15 C 0.50 7.17 7.45 -10.98 -0.08 7.09 16 16 O -0.54 -9.83 14.25 5.56 0.08 -9.75 16 17 C -0.13 -1.34 5.14 -27.88 -0.14 -1.49 16 18 C -0.04 -0.45 2.12 -92.07 -0.20 -0.65 16 19 H 0.09 1.05 7.96 -51.93 -0.41 0.63 16 20 C -0.13 -1.56 8.40 -35.83 -0.30 -1.86 16 21 C -0.17 -1.81 9.78 -35.83 -0.35 -2.16 16 22 C -0.09 -0.73 6.13 -28.18 -0.17 -0.90 16 23 C -0.12 -0.94 6.01 -26.51 -0.16 -1.10 16 24 C -0.12 -0.93 5.30 -26.52 -0.14 -1.07 16 25 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 26 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 30 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.40 4.68 6.16 -40.82 -0.25 4.43 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.11 1.61 6.47 -52.49 -0.34 1.27 16 40 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 LS Contribution 355.55 15.07 5.36 5.36 Total: -1.00 -30.49 355.55 -8.84 -39.33 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -8.18 Total: 1.85 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -1.52 Total: -16.71 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.44 Total: -36.22 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.75 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.49 -8.84 -39.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345882557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.569 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds