Wall clock time and date at job start Tue Mar 31 2020 01:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47453 * 2 1 4 4 C 1.53007 * 109.46825 * 239.99896 * 2 1 3 5 5 C 1.50700 * 109.46795 * 60.00318 * 4 2 1 6 6 H 1.07995 * 120.00330 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99894 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99442 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00270 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46951 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47101 * 119.99956 * 9 7 5 12 12 H 1.48499 * 109.47303 * 240.00224 * 9 7 5 13 13 C 1.53003 * 109.46735 * 120.00531 * 2 1 3 14 14 N 1.46496 * 109.46905 * 299.99175 * 13 2 1 15 15 C 1.34782 * 120.00006 * 180.02562 * 14 13 2 16 16 O 1.21282 * 119.99478 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99916 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.46856 * 180.02562 * 17 15 14 19 19 H 1.09002 * 109.35890 * 304.71835 * 18 17 15 20 20 C 1.50070 * 109.24925 * 64.37712 * 18 17 15 21 21 C 1.29172 * 123.99416 * 137.22472 * 20 18 17 22 22 C 1.50070 * 124.28199 * 359.61667 * 21 20 18 23 23 C 1.53024 * 110.03521 * 17.04512 * 22 21 20 24 24 C 1.53019 * 109.35813 * 185.00042 * 18 17 15 25 25 H 1.09001 * 109.46719 * 300.00481 * 1 2 3 26 26 H 1.08999 * 109.46436 * 59.99346 * 1 2 3 27 27 H 1.08990 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46904 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47212 * 300.00108 * 3 2 1 30 30 H 1.09001 * 109.46814 * 59.99929 * 3 2 1 31 31 H 1.09000 * 109.46775 * 180.02562 * 4 2 1 32 32 H 1.08994 * 109.46907 * 300.00203 * 4 2 1 33 33 H 0.97006 * 119.99532 * 179.97438 * 8 7 5 34 34 H 1.09008 * 109.46537 * 179.97438 * 13 2 1 35 35 H 1.08991 * 109.47194 * 59.99776 * 13 2 1 36 36 H 0.97008 * 120.00354 * 0.02562 * 14 13 2 37 37 H 1.09000 * 109.47034 * 60.00144 * 17 15 14 38 38 H 1.09004 * 109.47158 * 299.99527 * 17 15 14 39 39 H 1.07999 * 117.96134 * 317.29083 * 20 18 17 40 40 H 1.08001 * 117.75277 * 179.61802 * 21 20 18 41 41 H 1.09002 * 109.35777 * 256.90530 * 22 21 20 42 42 H 1.08998 * 109.35386 * 137.18228 * 22 21 20 43 43 H 1.08995 * 109.64445 * 70.32309 * 23 22 21 44 44 H 1.08999 * 109.63818 * 190.73904 * 23 22 21 45 45 H 1.08997 * 109.64626 * 70.81004 * 24 18 17 46 46 H 1.09001 * 109.81915 * 310.28136 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6271 -1.5509 -3.8526 9 14 1.2479 0.3986 -5.2572 10 1 0.4226 1.5651 -4.8530 11 1 2.4027 0.8662 -6.0655 12 1 0.4236 -0.5352 -6.0656 13 6 2.0400 -0.7214 1.2492 14 7 1.5518 -0.0308 2.4454 15 6 1.8777 -0.4910 3.6695 16 8 2.5748 -1.4772 3.7807 17 6 1.3750 0.2191 4.9000 18 6 1.8860 -0.5014 6.1492 19 1 1.5934 -1.5505 6.1063 20 6 3.3827 -0.4041 6.1990 21 6 4.0545 -0.1484 7.2722 22 6 3.4370 0.0956 8.6180 23 6 1.9922 -0.4084 8.6310 24 6 1.2741 0.1452 7.3937 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4423 -0.0005 29 1 1.6769 1.9563 -0.8899 30 1 1.6768 1.9562 0.8900 31 1 3.1300 -0.7217 -1.2491 32 1 1.6766 -1.7489 -1.2493 33 1 2.8614 -1.8823 -4.7337 34 1 3.1301 -0.7218 1.2490 35 1 1.6766 -1.7489 1.2491 36 1 0.9939 0.7579 2.3564 37 1 0.2850 0.2184 4.9000 38 1 1.7378 1.2470 4.9000 39 1 3.9309 -0.5562 5.2809 40 1 5.1310 -0.1079 7.1941 41 1 3.4488 1.1642 8.8326 42 1 4.0107 -0.4324 9.3797 43 1 1.9839 -1.4980 8.6026 44 1 1.4914 -0.0617 9.5349 45 1 0.2125 -0.0961 7.4477 46 1 1.4021 1.2268 7.3491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345882557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:20 Heat of formation + Delta-G solvation = -80.080267 kcal Electronic energy + Delta-G solvation = -21907.433508 eV Core-core repulsion = 18794.864241 eV Total energy + Delta-G solvation = -3112.569267 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.10065 -39.42083 -38.41474 -35.21487 -33.99478 -33.45505 -31.86415 -29.34409 -28.62082 -27.95851 -26.98203 -24.85902 -23.23611 -22.89410 -21.25486 -19.80073 -18.81402 -18.38351 -17.90331 -16.98681 -16.75039 -16.49079 -16.37548 -15.38684 -15.16578 -15.05642 -14.70394 -14.41969 -14.34633 -13.94661 -13.81914 -13.64178 -13.48978 -13.17822 -12.95845 -12.89307 -12.69862 -12.60408 -12.35365 -12.31888 -12.23076 -11.95143 -11.68931 -11.54053 -11.39902 -11.14977 -10.96589 -10.87242 -10.56818 -10.53319 -10.00692 -9.86534 -8.15005 -6.22979 1.41335 1.42195 1.44717 1.54148 1.74368 2.31028 2.45233 3.19566 3.73222 3.83724 3.92121 3.99321 4.08207 4.08331 4.23156 4.32528 4.43907 4.53805 4.56003 4.69735 4.71410 4.74428 4.79230 4.84540 4.88497 4.94417 4.97039 5.10311 5.11828 5.12655 5.13456 5.25956 5.41384 5.45859 5.49130 5.49718 5.53292 5.54221 5.59083 5.79978 5.83854 5.89341 6.12260 6.29490 6.67172 6.92776 7.36751 7.45029 8.97890 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.047582 B = 0.002813 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.317980 B = 9949.721422 C =10134.889075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.038 3.962 5 C -0.511 4.511 6 H 0.074 0.926 7 C -0.008 4.008 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.255 1.255 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.142 3.858 14 N -0.712 5.712 15 C 0.501 3.499 16 O -0.589 6.589 17 C -0.124 4.124 18 C -0.042 4.042 19 H 0.065 0.935 20 C -0.154 4.154 21 C -0.166 4.166 22 C -0.089 4.089 23 C -0.122 4.122 24 C -0.110 4.110 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.035 0.965 28 H 0.034 0.966 29 H 0.055 0.945 30 H 0.072 0.928 31 H -0.017 1.017 32 H -0.016 1.016 33 H 0.259 0.741 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.414 0.586 37 H 0.125 0.875 38 H 0.115 0.885 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.052 0.948 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.423 8.848 24.276 26.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.179 1.179 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.018 3.982 14 N -0.365 5.365 15 C 0.289 3.711 16 O -0.469 6.469 17 C -0.163 4.163 18 C -0.061 4.061 19 H 0.083 0.917 20 C -0.172 4.172 21 C -0.184 4.184 22 C -0.125 4.125 23 C -0.159 4.159 24 C -0.147 4.147 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.002 0.998 32 H 0.002 0.998 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.252 0.748 37 H 0.143 0.857 38 H 0.133 0.867 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.103 0.897 45 H 0.100 0.900 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.862 8.063 24.222 25.988 hybrid contribution 0.368 -0.229 -1.732 1.785 sum -4.494 7.834 22.490 24.236 Atomic orbital electron populations 1.21691 0.93430 1.00922 1.01785 1.20702 0.96811 0.96268 0.92689 1.21689 0.99755 0.94626 1.01763 1.18991 0.94151 0.94193 0.92591 1.21624 1.30261 1.12049 0.90997 0.90794 1.25985 0.95694 0.95893 1.02846 1.70140 1.38907 1.25069 1.24033 0.85468 0.78045 0.78834 0.79129 1.17882 1.21095 1.21051 1.21139 0.97424 0.95292 0.84388 1.46051 1.53356 1.32215 1.04887 1.21519 0.79529 0.84288 0.85735 1.90682 1.40015 1.28774 1.87461 1.21769 1.03986 1.00949 0.89616 1.19824 0.92179 0.99611 0.94446 0.91705 1.22076 0.96607 1.00602 0.97937 1.22167 0.99454 1.01299 0.95492 1.20493 0.96038 1.02079 0.93931 1.21626 0.95273 1.00381 0.98632 1.21654 0.99904 1.00743 0.92394 0.90853 0.92573 0.94569 0.94697 0.92549 0.90914 0.99832 0.99750 0.93193 0.94205 0.94018 0.74817 0.85664 0.86700 0.90402 0.88624 0.89697 0.90596 0.92874 0.89678 0.89986 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 2 C -0.06 -2.42 0.54 -52.18 -0.03 -2.45 16 3 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 4 C 0.04 1.97 4.04 29.85 0.12 2.09 16 5 C -0.51 -27.47 7.65 25.60 0.20 -27.28 16 6 H 0.07 3.70 5.68 -2.91 -0.02 3.69 16 7 C -0.01 -0.43 5.46 84.65 0.46 0.04 16 8 N -0.94 -57.69 13.29 21.45 0.28 -57.40 16 9 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 10 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 C 0.14 5.13 4.56 86.38 0.39 5.53 16 14 N -0.71 -19.01 4.96 -463.06 -2.30 -21.30 16 15 C 0.50 13.83 7.45 87.66 0.65 14.48 16 16 O -0.59 -22.08 14.25 -3.03 -0.04 -22.12 16 17 C -0.12 -2.12 5.14 29.85 0.15 -1.96 16 18 C -0.04 -0.82 2.12 -11.73 -0.02 -0.84 16 19 H 0.06 1.54 7.96 -2.39 -0.02 1.52 16 20 C -0.15 -3.66 8.40 27.30 0.23 -3.43 16 21 C -0.17 -3.32 9.78 27.30 0.27 -3.05 16 22 C -0.09 -1.24 6.13 29.66 0.18 -1.06 16 23 C -0.12 -1.55 6.01 30.73 0.18 -1.37 16 24 C -0.11 -1.39 5.30 30.73 0.16 -1.23 16 25 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 26 H 0.06 1.99 6.62 -2.39 -0.02 1.97 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 2.01 6.62 -2.39 -0.02 1.99 16 30 H 0.07 1.78 6.86 -2.39 -0.02 1.76 16 31 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 32 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 33 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 34 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.41 8.20 6.16 -92.70 -0.57 7.63 16 37 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.08 2.37 6.47 -2.91 -0.02 2.35 16 40 H 0.10 1.89 8.06 -2.91 -0.02 1.87 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.05 0.80 8.12 -2.39 -0.02 0.78 16 44 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.08 0.83 8.10 -2.39 -0.02 0.81 16 Total: -1.00 -70.87 355.55 4.45 -66.42 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.36 Total: 16.11 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 4.11 Total: -27.40 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -2.01 Total: -78.70 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.04 Total: -22.12 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -70.87 4.45 -66.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345882557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.656 kcal (2) G-P(sol) polarization free energy of solvation -70.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds