Wall clock time and date at job start Tue Mar 31 2020 01:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47495 * 2 1 4 4 C 1.53004 * 109.47495 * 239.99905 * 2 1 3 5 5 C 1.50701 * 109.46756 * 60.00232 * 4 2 1 6 6 H 1.07998 * 120.00213 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99612 * 180.02562 * 5 4 2 8 8 N 1.31508 * 119.99764 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99603 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47423 * 59.99753 * 9 7 5 11 11 H 1.48501 * 109.46676 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47076 * 299.99230 * 9 7 5 13 13 C 1.52999 * 109.47170 * 119.99811 * 2 1 3 14 14 N 1.46496 * 109.47038 * 300.00316 * 13 2 1 15 15 C 1.34784 * 120.00081 * 179.97438 * 14 13 2 16 16 O 1.21279 * 119.99866 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99927 * 179.97438 * 15 14 13 18 18 C 1.50701 * 109.47031 * 179.97438 * 17 15 14 19 19 C 1.29445 * 117.95895 * 94.73363 * 18 17 15 20 20 C 1.50074 * 124.07477 * 180.75080 * 19 18 17 21 21 C 1.53016 * 110.14671 * 342.87319 * 20 19 18 22 22 C 1.53391 * 108.44058 * 49.43435 * 21 20 19 23 23 C 1.50066 * 117.96583 * 275.00349 * 18 17 15 24 24 H 1.09000 * 109.47275 * 300.00611 * 1 2 3 25 25 H 1.09004 * 109.46831 * 59.99910 * 1 2 3 26 26 H 1.08998 * 109.47512 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47443 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.46732 * 300.00105 * 3 2 1 29 29 H 1.09001 * 109.46834 * 59.99412 * 3 2 1 30 30 H 1.09004 * 109.47070 * 179.97438 * 4 2 1 31 31 H 1.08997 * 109.46865 * 300.00129 * 4 2 1 32 32 H 0.97008 * 119.99786 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47661 * 180.02562 * 13 2 1 34 34 H 1.08997 * 109.47045 * 59.99960 * 13 2 1 35 35 H 0.96998 * 120.00372 * 359.97438 * 14 13 2 36 36 H 1.08999 * 109.47012 * 59.99745 * 17 15 14 37 37 H 1.08997 * 109.47081 * 299.99927 * 17 15 14 38 38 H 1.07999 * 117.96176 * 0.73020 * 19 18 17 39 39 H 1.09002 * 109.35609 * 222.66402 * 20 19 18 40 40 H 1.09003 * 109.35439 * 103.08085 * 20 19 18 41 41 H 1.09003 * 109.64533 * 289.75036 * 21 20 19 42 42 H 1.09000 * 109.64519 * 169.11862 * 21 20 19 43 43 H 1.09001 * 109.64689 * 172.88318 * 22 21 20 44 44 H 1.09003 * 109.64136 * 52.25083 * 22 21 20 45 45 H 1.09003 * 109.35468 * 282.79297 * 23 18 17 46 46 H 1.08998 * 109.35916 * 42.51411 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8705 -0.4822 -3.7320 8 7 2.6266 -1.5514 -3.8525 9 14 1.2473 0.3980 -5.2572 10 1 1.7422 1.7981 -5.2577 11 1 1.7415 -0.3027 -6.4696 12 1 -0.2377 0.3978 -5.2568 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8767 -0.4913 3.6696 16 8 2.5733 -1.4779 3.7809 17 6 1.3748 0.2194 4.9000 18 6 1.8760 -0.4917 6.1305 19 6 2.9645 -0.0583 6.6809 20 6 3.5935 -0.6718 7.8975 21 6 2.5825 -1.5646 8.6201 22 6 1.9397 -2.5020 7.5900 23 6 1.0856 -1.6621 6.6379 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1301 -0.7208 -1.2494 31 1 1.6767 -1.7489 -1.2492 32 1 2.8604 -1.8833 -4.7336 33 1 3.1299 -0.7209 1.2496 34 1 1.6766 -1.7488 1.2493 35 1 0.9942 0.7582 2.3564 36 1 0.2848 0.2203 4.8998 37 1 1.7389 1.2468 4.9000 38 1 3.4504 0.7979 6.2367 39 1 3.9236 0.1190 8.5712 40 1 4.4537 -1.2699 7.5968 41 1 1.8132 -0.9467 9.0833 42 1 3.0926 -2.1530 9.3828 43 1 1.3102 -3.2309 8.1004 44 1 2.7183 -3.0164 7.0266 45 1 0.2039 -1.3004 7.1672 46 1 0.7733 -2.2796 5.7957 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346023556.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:01 Heat of formation + Delta-G solvation = -81.839596 kcal Electronic energy + Delta-G solvation = -21908.510910 eV Core-core repulsion = 18795.865353 eV Total energy + Delta-G solvation = -3112.645557 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.03960 -39.39228 -38.42145 -35.21128 -34.05508 -33.60063 -31.60808 -29.40056 -28.68844 -27.96102 -26.98204 -24.81577 -24.10361 -22.66674 -21.35382 -19.86074 -18.46311 -18.37223 -17.90930 -17.06199 -16.55253 -16.50439 -16.07667 -15.35920 -15.30118 -14.98081 -14.66402 -14.51414 -14.38739 -14.24274 -13.93846 -13.75987 -13.44680 -13.10169 -12.97279 -12.85049 -12.75481 -12.63157 -12.48523 -12.32930 -12.22535 -12.00761 -11.64956 -11.53631 -11.32090 -11.16802 -11.08212 -10.90613 -10.76920 -10.51442 -10.02648 -9.63029 -8.14463 -6.22675 1.28459 1.42181 1.44437 1.51670 1.72273 2.39040 2.48154 3.19815 3.67852 3.82452 3.94123 4.06243 4.07840 4.11083 4.22884 4.30954 4.37858 4.49179 4.59240 4.69363 4.70296 4.72952 4.75322 4.78080 4.81193 4.96648 5.01203 5.04908 5.10580 5.11595 5.12385 5.20355 5.33979 5.41137 5.47927 5.48435 5.49691 5.53686 5.58163 5.77696 5.79943 5.89212 6.13351 6.29569 6.65773 6.92569 7.34936 7.45222 8.97999 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.045277 B = 0.002843 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.267516 B = 9845.888945 C = 9955.494828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.266 1.266 13 C 0.143 3.857 14 N -0.712 5.712 15 C 0.505 3.495 16 O -0.586 6.586 17 C -0.102 4.102 18 C -0.114 4.114 19 C -0.157 4.157 20 C -0.091 4.091 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.081 4.081 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.056 0.944 29 H 0.072 0.928 30 H -0.016 1.016 31 H -0.016 1.016 32 H 0.260 0.740 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.414 0.586 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.042 0.958 45 H 0.090 0.910 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.151 6.870 23.857 25.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.217 1.217 12 H -0.191 1.191 13 C 0.018 3.982 14 N -0.365 5.365 15 C 0.293 3.707 16 O -0.466 6.466 17 C -0.142 4.142 18 C -0.115 4.115 19 C -0.175 4.175 20 C -0.128 4.128 21 C -0.152 4.152 22 C -0.159 4.159 23 C -0.118 4.118 24 H 0.091 0.909 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.002 0.998 31 H 0.002 0.998 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.252 0.748 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.108 0.892 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.589 6.079 23.794 24.983 hybrid contribution 0.101 0.006 -1.661 1.664 sum -4.488 6.086 22.132 23.389 Atomic orbital electron populations 1.21691 0.93461 1.00907 1.01777 1.20702 0.96784 0.96299 0.92678 1.21693 0.99789 0.94591 1.01771 1.18975 0.94153 0.94158 0.92531 1.21570 1.30488 1.12138 0.91037 0.90826 1.25977 0.95654 0.95864 1.02813 1.70122 1.38785 1.25012 1.24172 0.85580 0.78989 0.78751 0.78210 1.19068 1.21745 1.19065 1.21146 0.97461 0.95271 0.84305 1.46026 1.53449 1.32222 1.04796 1.21366 0.79596 0.84308 0.85421 1.90690 1.39922 1.28570 1.87468 1.20910 1.04184 1.00345 0.88729 1.20486 0.97854 0.97641 0.95503 1.22086 0.95894 1.00951 0.98583 1.20466 0.98114 0.99190 0.95025 1.21588 0.98614 0.97703 0.97319 1.21591 0.99108 0.98045 0.97134 1.20364 0.98276 0.94476 0.98639 0.90882 0.92553 0.94603 0.94648 0.92536 0.90909 0.99810 0.99777 0.93169 0.94123 0.94042 0.74799 0.85834 0.86081 0.87921 0.89627 0.91934 0.90758 0.90756 0.90556 0.93914 0.89159 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 2 C -0.06 -2.42 0.54 -52.18 -0.03 -2.45 16 3 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 4 C 0.04 2.03 4.04 29.85 0.12 2.15 16 5 C -0.51 -27.64 7.65 25.60 0.20 -27.44 16 6 H 0.07 3.67 5.68 -2.91 -0.02 3.65 16 7 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 8 N -0.94 -57.63 13.29 21.45 0.28 -57.35 16 9 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 13 C 0.14 5.16 4.56 86.38 0.39 5.55 16 14 N -0.71 -19.12 4.96 -463.07 -2.30 -21.41 16 15 C 0.50 14.20 7.82 87.66 0.69 14.89 16 16 O -0.59 -22.48 16.03 -3.03 -0.05 -22.53 16 17 C -0.10 -1.85 5.71 29.10 0.17 -1.69 16 18 C -0.11 -2.35 4.33 -15.10 -0.07 -2.42 16 19 C -0.16 -3.13 9.37 27.04 0.25 -2.88 16 20 C -0.09 -1.53 6.11 29.66 0.18 -1.35 16 21 C -0.11 -1.70 6.01 30.73 0.18 -1.52 16 22 C -0.12 -2.23 6.01 30.73 0.18 -2.05 16 23 C -0.08 -1.57 5.80 29.66 0.17 -1.40 16 24 H 0.07 1.77 6.86 -2.39 -0.02 1.76 16 25 H 0.06 2.00 6.62 -2.39 -0.02 1.98 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.06 2.01 6.62 -2.39 -0.02 1.99 16 29 H 0.07 1.77 6.86 -2.39 -0.02 1.76 16 30 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 31 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 32 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.41 8.24 6.16 -92.71 -0.57 7.67 16 36 H 0.12 1.58 8.11 -2.39 -0.02 1.56 16 37 H 0.12 1.60 7.80 -2.39 -0.02 1.58 16 38 H 0.10 1.93 7.74 -2.91 -0.02 1.91 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 0.95 8.12 -2.39 -0.02 0.93 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.04 0.98 8.12 -2.39 -0.02 0.96 16 45 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -70.85 359.36 4.40 -66.46 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.37 Total: 16.58 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: 4.07 Total: -27.36 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -2.01 Total: -78.76 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.05 Total: -22.53 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -70.85 4.40 -66.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346023556.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.384 kcal (2) G-P(sol) polarization free energy of solvation -70.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds