Wall clock time and date at job start Tue Mar 31 2020 00:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47070 * 2 1 4 4 C 1.34520 * 125.78625 * 90.00256 * 3 2 1 5 5 C 1.41381 * 106.83580 * 180.29744 * 4 3 2 6 6 C 1.34513 * 106.84363 * 359.57150 * 5 4 3 7 7 C 1.50698 * 125.78877 * 180.18958 * 6 5 4 8 8 H 1.09000 * 109.47165 * 20.30223 * 7 6 5 9 9 C 1.53002 * 109.46923 * 260.30388 * 7 6 5 10 10 N 1.46897 * 109.47185 * 140.30586 * 7 6 5 11 11 C 1.46895 * 111.00187 * 204.99998 * 10 7 6 12 12 C 1.53000 * 109.47511 * 180.02562 * 11 10 7 13 13 C 1.53004 * 109.47157 * 299.99963 * 12 11 10 14 14 C 1.53004 * 109.47055 * 59.99552 * 12 11 10 15 15 C 1.52997 * 109.47437 * 179.97438 * 12 11 10 16 16 C 1.50698 * 109.47229 * 179.97438 * 15 12 11 17 17 H 1.08003 * 119.99997 * 0.02562 * 16 15 12 18 18 C 1.37875 * 119.99819 * 180.02562 * 16 15 12 19 19 N 1.31507 * 120.00524 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99875 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47270 * 59.99601 * 20 18 16 22 22 H 1.48498 * 109.47309 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46917 * 300.00224 * 20 18 16 24 24 O 1.34302 * 125.79164 * 270.04068 * 3 2 1 25 25 H 1.09005 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47147 * 299.99667 * 1 2 3 27 27 H 1.09001 * 109.47233 * 60.00339 * 1 2 3 28 28 H 1.08999 * 109.47588 * 240.00178 * 2 1 3 29 29 H 1.09001 * 109.47044 * 120.00179 * 2 1 3 30 30 H 1.08002 * 126.57789 * 0.02807 * 4 3 2 31 31 H 1.08009 * 126.57222 * 179.73218 * 5 4 3 32 32 H 1.09002 * 109.46774 * 60.00534 * 9 7 6 33 33 H 1.09003 * 109.47184 * 179.97438 * 9 7 6 34 34 H 1.08991 * 109.47273 * 299.99836 * 9 7 6 35 35 H 1.00907 * 110.99921 * 328.95290 * 10 7 6 36 36 H 1.09008 * 109.47026 * 299.99649 * 11 10 7 37 37 H 1.08998 * 109.47560 * 60.00010 * 11 10 7 38 38 H 1.09003 * 109.46765 * 59.99154 * 13 12 11 39 39 H 1.08993 * 109.47612 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.46707 * 300.00183 * 13 12 11 41 41 H 1.08996 * 109.46831 * 60.00482 * 14 12 11 42 42 H 1.08999 * 109.47126 * 180.02562 * 14 12 11 43 43 H 1.08993 * 109.47163 * 300.00377 * 14 12 11 44 44 H 1.08996 * 109.47413 * 300.00109 * 15 12 11 45 45 H 1.09004 * 109.46876 * 60.00069 * 15 12 11 46 46 H 0.97000 * 120.00392 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1625 1.0912 5 6 2.7336 3.4255 0.6321 6 6 2.7225 3.3770 -0.7121 7 6 3.1188 4.4983 -1.6377 8 1 3.7434 5.2107 -1.0988 9 6 1.8622 5.2061 -2.1485 10 7 3.8696 3.9516 -2.7758 11 6 4.7556 4.9678 -3.3590 12 6 5.5186 4.3628 -4.5391 13 6 6.3538 3.1768 -4.0523 14 6 4.5235 3.8850 -5.5986 15 6 6.4409 5.4214 -5.1469 16 6 7.1928 4.8252 -6.3089 17 1 7.0289 3.7944 -6.5864 18 6 8.0900 5.5957 -7.0176 19 7 8.2900 6.8507 -6.6794 20 14 9.0215 4.8569 -8.4585 21 1 8.0558 4.3933 -9.4869 22 1 9.9177 5.8841 -9.0475 23 1 9.8320 3.7058 -7.9859 24 8 2.2934 2.1616 -1.0894 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.1859 1.8538 2.1205 31 1 3.0248 4.2669 1.2435 32 1 1.3051 5.6118 -1.3040 33 1 2.1488 6.0174 -2.8176 34 1 1.2376 4.4938 -2.6873 35 1 4.3901 3.1307 -2.5048 36 1 4.1605 5.8126 -3.7063 37 1 5.4642 5.3085 -2.6041 38 1 5.6963 2.4228 -3.6195 39 1 6.8970 2.7455 -4.8930 40 1 7.0626 3.5172 -3.2975 41 1 3.9286 4.7298 -5.9454 42 1 5.0670 3.4535 -6.4392 43 1 3.8662 3.1310 -5.1659 44 1 5.8456 6.2660 -5.4938 45 1 7.1498 5.7621 -4.3922 46 1 8.9209 7.3929 -7.1783 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348218231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:16 Heat of formation + Delta-G solvation = -15.183846 kcal Electronic energy + Delta-G solvation = -22096.962537 eV Core-core repulsion = 18987.207390 eV Total energy + Delta-G solvation = -3109.755147 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.65251 -37.90759 -35.45514 -34.20899 -32.85549 -32.26919 -30.00898 -27.99238 -26.86172 -26.30819 -25.40870 -24.04360 -22.67105 -21.69998 -21.29324 -19.91534 -18.04314 -16.81132 -16.24426 -16.10343 -15.47478 -14.98289 -14.60782 -14.45586 -14.17779 -13.63354 -13.41245 -13.24363 -12.89736 -12.79099 -12.71154 -12.57643 -12.10108 -11.97706 -11.95196 -11.81500 -11.59062 -11.31340 -11.19655 -10.91129 -10.83338 -10.76194 -10.46615 -10.23689 -10.12359 -9.90983 -9.66122 -9.00991 -8.83178 -8.34502 -8.29707 -8.14986 -5.94421 -3.94468 1.66486 2.53392 2.82749 3.36151 3.40623 3.43049 4.27781 4.43629 4.51717 4.69552 4.92072 4.93497 4.98940 5.21445 5.25758 5.30985 5.41347 5.50537 5.55818 5.67444 5.70706 5.74841 5.78067 5.84627 5.90345 5.93045 6.00253 6.09081 6.26124 6.28942 6.34776 6.45698 6.53906 6.69719 6.81172 6.85924 7.09865 7.22830 7.25709 7.28973 7.40233 7.64709 7.72252 7.87428 8.05830 8.50411 9.10634 9.68203 11.17252 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.030308 B = 0.003224 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.631795 B = 8682.087129 C = 9065.379580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.043 4.043 3 C -0.016 4.016 4 C -0.211 4.211 5 C -0.212 4.212 6 C -0.003 4.003 7 C 0.163 3.837 8 H 0.070 0.930 9 C -0.138 4.138 10 N -0.679 5.679 11 C 0.068 3.932 12 C -0.057 4.057 13 C -0.129 4.129 14 C -0.116 4.116 15 C 0.034 3.966 16 C -0.507 4.507 17 H 0.058 0.942 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.888 3.112 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.278 1.278 24 O -0.157 6.157 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.344 0.656 36 H 0.069 0.931 37 H 0.025 0.975 38 H 0.033 0.967 39 H 0.064 0.936 40 H 0.040 0.960 41 H 0.039 0.961 42 H 0.054 0.946 43 H 0.043 0.957 44 H 0.015 0.985 45 H 0.012 0.988 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.278 -9.688 15.305 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.080 4.080 3 C -0.066 4.066 4 C -0.231 4.231 5 C -0.232 4.232 6 C -0.054 4.054 7 C 0.053 3.947 8 H 0.088 0.912 9 C -0.195 4.195 10 N -0.312 5.312 11 C -0.060 4.060 12 C -0.058 4.058 13 C -0.187 4.187 14 C -0.173 4.173 15 C -0.003 4.003 16 C -0.545 4.545 17 H 0.077 0.923 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.204 1.204 24 O -0.053 6.053 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.164 0.836 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.034 0.966 45 H 0.031 0.969 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.717 -9.511 14.500 22.745 hybrid contribution 1.392 -0.055 0.169 1.403 sum -13.325 -9.566 14.669 22.006 Atomic orbital electron populations 1.21784 0.94043 1.02193 1.02655 1.20061 0.96282 0.87657 1.04021 1.22455 1.04551 0.95244 0.84397 1.21490 1.07907 0.94475 0.99189 1.21545 1.08491 0.99368 0.93796 1.22587 1.02966 0.85689 0.94145 1.20138 0.96143 0.89571 0.88830 0.91238 1.21812 0.96272 1.00538 1.00927 1.60679 1.31776 1.09078 1.29653 1.22213 0.93403 0.93932 0.96473 1.20624 0.95110 0.96840 0.93214 1.21772 0.98668 0.97288 1.00941 1.21597 0.97661 0.99859 0.98207 1.19116 0.93206 0.92747 0.95239 1.21204 1.22245 0.97444 1.13645 0.92343 1.25008 0.97157 0.94881 0.97517 1.69951 1.36126 1.06945 1.40786 0.86729 0.79880 0.78760 0.83043 1.20299 1.21454 1.20369 1.84030 1.64574 1.22149 1.34500 0.91722 0.92312 0.92169 0.89987 0.89101 0.83833 0.83719 0.92646 0.91441 0.91675 0.83642 0.91251 0.95660 0.94849 0.91673 0.94113 0.94153 0.92717 0.93842 0.96649 0.96925 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.16 0.37 -0.69 16 2 C -0.04 -0.35 6.47 -27.88 -0.18 -0.53 16 3 C -0.02 -0.18 6.58 -35.62 -0.23 -0.42 16 4 C -0.21 -2.34 10.81 -39.70 -0.43 -2.77 16 5 C -0.21 -2.54 10.80 -39.70 -0.43 -2.97 16 6 C 0.00 -0.04 5.81 -35.63 -0.21 -0.24 16 7 C 0.16 2.15 3.07 -68.87 -0.21 1.94 16 8 H 0.07 0.88 7.79 -51.93 -0.40 0.47 16 9 C -0.14 -1.68 9.40 37.16 0.35 -1.33 16 10 N -0.68 -10.33 5.51 -107.95 -0.59 -10.92 16 11 C 0.07 1.18 4.44 -3.83 -0.02 1.16 16 12 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 13 C -0.13 -2.47 7.89 37.16 0.29 -2.17 16 14 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 15 C 0.03 0.87 4.04 -27.89 -0.11 0.76 16 16 C -0.51 -13.95 7.65 -34.44 -0.26 -14.21 16 17 H 0.06 1.57 5.68 -52.48 -0.30 1.27 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 20 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 O -0.16 -2.18 10.64 5.71 0.06 -2.12 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.83 7.45 -51.93 -0.39 0.45 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.34 5.32 6.39 -39.29 -0.25 5.07 16 36 H 0.07 1.21 7.44 -51.92 -0.39 0.83 16 37 H 0.03 0.44 8.06 -51.93 -0.42 0.02 16 38 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 39 H 0.06 1.34 6.62 -51.93 -0.34 0.99 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 43 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -30.03 365.48 -8.48 -38.51 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.20 Total: 1.80 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -0.97 Total: -23.25 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.14 Total: -37.15 kcal Atomic # 8 Polarization: -2.18 SS G_CDS: 0.06 Total: -2.12 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.03 -8.48 -38.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348218231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.325 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds