Wall clock time and date at job start Tue Mar 31 2020 01:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46829 * 2 1 4 4 C 1.53001 * 109.47455 * 184.29920 * 3 2 1 5 5 C 1.53004 * 109.47454 * 64.29673 * 3 2 1 6 6 N 1.46501 * 109.47369 * 304.29859 * 3 2 1 7 7 C 1.46499 * 120.00360 * 124.00864 * 6 3 2 8 8 C 1.50704 * 109.47365 * 263.85875 * 7 6 3 9 9 H 1.08002 * 119.99765 * 3.92729 * 8 7 6 10 10 C 1.37874 * 120.00141 * 183.92965 * 8 7 6 11 11 N 1.31516 * 119.99763 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99918 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47423 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47033 * 119.99906 * 12 10 8 15 15 H 1.48504 * 109.47228 * 239.99919 * 12 10 8 16 16 C 1.34780 * 119.99848 * 304.01064 * 6 3 2 17 17 O 1.21610 * 119.99754 * 4.88969 * 16 6 3 18 18 C 1.47100 * 120.00108 * 184.88590 * 16 6 3 19 19 C 1.32608 * 124.62249 * 172.89437 * 18 16 6 20 20 C 1.50695 * 124.61990 * 0.28891 * 19 18 16 21 21 C 1.51117 * 110.75888 * 180.26398 * 19 18 16 22 22 C 1.54575 * 104.84131 * 343.40274 * 21 19 18 23 23 C 1.51112 * 124.61878 * 353.19854 * 18 16 6 24 24 H 1.08993 * 109.47324 * 307.03670 * 1 2 3 25 25 H 1.08999 * 109.47524 * 67.04080 * 1 2 3 26 26 H 1.09005 * 109.46884 * 187.03509 * 1 2 3 27 27 H 1.08997 * 109.47552 * 240.00363 * 2 1 3 28 28 H 1.09000 * 109.47454 * 119.99550 * 2 1 3 29 29 H 1.08998 * 109.47695 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.46524 * 300.00167 * 4 3 2 31 31 H 1.09006 * 109.46853 * 59.99820 * 4 3 2 32 32 H 1.09001 * 109.46753 * 303.61242 * 5 3 2 33 33 H 1.08999 * 109.46477 * 63.60684 * 5 3 2 34 34 H 1.08997 * 109.47388 * 183.60462 * 5 3 2 35 35 H 1.09004 * 109.46521 * 23.85722 * 7 6 3 36 36 H 1.08995 * 109.47209 * 143.85326 * 7 6 3 37 37 H 0.97005 * 119.99477 * 180.02562 * 11 10 8 38 38 H 1.09005 * 109.47421 * 89.99628 * 20 19 18 39 39 H 1.08998 * 109.47383 * 209.99911 * 20 19 18 40 40 H 1.09004 * 109.47058 * 329.99937 * 20 19 18 41 41 H 1.08998 * 110.36247 * 224.56080 * 21 19 18 42 42 H 1.09007 * 110.36095 * 102.24708 * 21 19 18 43 43 H 1.09001 * 110.98284 * 266.92752 * 22 21 19 44 44 H 1.08997 * 111.01236 * 143.14069 * 22 21 19 45 45 H 1.09002 * 110.36497 * 315.17104 * 23 18 16 46 46 H 1.09000 * 110.36962 * 77.49038 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5661 1.4440 -0.1081 5 6 1.6201 2.1320 1.2998 6 7 1.4689 2.1624 -1.1410 7 6 0.7128 3.3982 -0.9236 8 6 -0.7604 3.0842 -0.8760 9 1 -1.0961 2.0592 -0.9321 10 6 -1.6795 4.1054 -0.7608 11 7 -1.2707 5.3535 -0.6920 12 14 -3.5056 3.7161 -0.7026 13 1 -3.7019 2.2471 -0.7963 14 1 -4.0766 4.2107 0.5760 15 1 -4.1900 4.3811 -1.8404 16 6 1.6390 1.6876 -2.3909 17 8 2.1889 0.6170 -2.5650 18 6 1.1596 2.4644 -3.5444 19 6 1.3950 2.1543 -4.8120 20 6 2.1850 0.9545 -5.2673 21 6 0.7626 3.1675 -5.7378 22 6 -0.2600 3.9229 -4.8586 23 6 0.3371 3.7283 -3.4462 24 1 -0.3633 0.6189 0.8203 25 1 -0.3634 0.4009 -0.9462 26 1 -0.3633 -1.0200 0.1259 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9294 2.4717 -0.1086 30 1 3.9909 0.9084 0.7409 31 1 3.8652 0.9529 -1.0342 32 1 0.5370 2.0744 1.4081 33 1 2.0966 1.6351 2.1448 34 1 1.9275 3.1773 1.2724 35 1 1.0188 3.8499 0.0202 36 1 0.9101 4.0932 -1.7397 37 1 -1.9174 6.0719 -0.6107 38 1 1.5134 0.1063 -5.4004 39 1 2.6765 1.1807 -6.2135 40 1 2.9367 0.7084 -4.5172 41 1 0.2563 2.6645 -6.5616 42 1 1.5171 3.8559 -6.1188 43 1 -1.2480 3.4681 -4.9308 44 1 -0.2985 4.9794 -5.1240 45 1 -0.4588 3.6068 -2.7114 46 1 0.9717 4.5745 -3.1827 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348526992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:21 Heat of formation + Delta-G solvation = -10.762868 kcal Electronic energy + Delta-G solvation = -24429.060101 eV Core-core repulsion = 21319.496663 eV Total energy + Delta-G solvation = -3109.563439 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -39.99764 -37.76129 -36.01056 -33.83784 -32.00485 -30.59192 -29.93928 -28.02679 -27.83413 -26.35432 -24.93253 -23.01453 -22.78035 -21.33413 -20.36373 -18.18874 -17.00952 -16.53106 -15.34727 -15.04391 -14.92445 -14.42468 -14.38228 -14.11676 -13.76015 -13.01362 -12.78535 -12.65868 -12.51496 -12.21651 -12.10475 -11.96604 -11.76907 -11.64303 -11.39106 -11.27095 -11.11797 -10.94356 -10.92519 -10.86002 -10.65352 -10.45550 -10.37854 -10.23568 -10.09212 -9.90481 -9.46041 -9.15790 -8.63824 -8.40580 -8.02336 -7.40543 -6.18272 -4.20846 2.13728 3.20031 3.30027 3.34255 4.02038 4.16469 4.34419 5.11777 5.13390 5.25330 5.35778 5.57151 5.58869 5.61484 5.75991 5.82073 5.96805 5.98157 6.06968 6.12044 6.13522 6.18175 6.24395 6.30887 6.32228 6.34187 6.44313 6.51759 6.53960 6.60068 6.64764 6.75077 6.88324 6.88627 6.93187 7.00708 7.06367 7.15833 7.31137 7.40587 7.65209 7.75707 7.84252 8.14447 8.49770 8.88012 9.20964 9.41552 10.85959 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011985 B = 0.010291 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.656524 B = 2720.089013 C = 4227.099357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.177 3.823 4 C -0.157 4.157 5 C -0.151 4.151 6 N -0.578 5.578 7 C 0.199 3.801 8 C -0.525 4.525 9 H 0.070 0.930 10 C 0.067 3.933 11 N -0.884 5.884 12 Si 0.885 3.115 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.282 1.282 16 C 0.567 3.433 17 O -0.569 6.569 18 C -0.155 4.155 19 C -0.095 4.095 20 C -0.105 4.105 21 C -0.091 4.091 22 C -0.125 4.125 23 C -0.122 4.122 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.034 0.966 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.067 0.933 37 H 0.264 0.736 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.152 0.848 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.626 -3.694 -3.021 6.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.092 3.908 4 C -0.215 4.215 5 C -0.208 4.208 6 N -0.308 5.308 7 C 0.080 3.920 8 C -0.563 4.563 9 H 0.088 0.912 10 C -0.137 4.137 11 N -0.522 5.522 12 Si 0.712 3.288 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.208 1.208 16 C 0.358 3.642 17 O -0.453 6.453 18 C -0.158 4.158 19 C -0.097 4.097 20 C -0.161 4.161 21 C -0.128 4.128 22 C -0.163 4.163 23 C -0.157 4.157 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.169 0.831 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.834 -4.011 -3.035 6.976 hybrid contribution -1.152 0.082 0.099 1.159 sum 3.682 -3.930 -2.936 6.133 Atomic orbital electron populations 1.21836 0.95508 0.99552 1.03270 1.21934 0.96673 0.96123 1.02257 1.20202 0.91912 0.91999 0.86641 1.22170 0.95700 1.01389 1.02256 1.22154 1.03437 1.00336 0.94842 1.48169 1.51829 1.26693 1.04117 1.20424 0.90253 0.81524 0.99808 1.21635 0.90989 0.93967 1.49739 0.91168 1.24915 0.98772 0.94961 0.95033 1.69938 1.34422 0.98748 1.49136 0.86629 0.85509 0.78812 0.77804 1.19581 1.20952 1.20802 1.17891 0.78552 0.84681 0.83125 1.90550 1.46273 1.22582 1.85909 1.21793 1.02141 0.99047 0.92832 1.22531 0.97037 0.95934 0.94170 1.20639 0.99813 0.94816 1.00862 1.21304 0.97930 0.96156 0.97437 1.22451 0.98036 0.99363 0.96400 1.22339 1.01824 0.93081 0.98501 0.92314 0.91746 0.94674 0.89589 0.93054 0.93125 0.92739 0.91449 0.90305 0.93091 0.91914 0.94295 0.91537 0.92613 0.91716 0.93194 0.89623 0.91724 0.91108 0.91763 0.91706 0.83092 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 8.69 37.16 0.32 -2.39 16 2 C -0.13 -2.37 4.60 -26.73 -0.12 -2.49 16 3 C 0.18 3.26 0.73 -131.82 -0.10 3.17 16 4 C -0.16 -2.63 8.46 37.16 0.31 -2.32 16 5 C -0.15 -2.63 7.14 37.16 0.27 -2.36 16 6 N -0.58 -11.94 1.69 -161.55 -0.27 -12.22 16 7 C 0.20 4.48 4.13 -5.19 -0.02 4.45 16 8 C -0.52 -12.56 6.63 -34.44 -0.23 -12.79 16 9 H 0.07 1.74 5.16 -52.49 -0.27 1.47 16 10 C 0.07 1.64 4.79 -17.82 -0.09 1.55 16 11 N -0.88 -22.65 13.29 55.43 0.74 -21.91 16 12 Si 0.88 19.77 29.54 -169.99 -5.02 14.75 16 13 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 C 0.57 12.06 6.58 -12.66 -0.08 11.98 16 17 O -0.57 -12.40 10.55 5.27 0.06 -12.35 16 18 C -0.16 -3.14 5.98 -102.73 -0.61 -3.75 16 19 C -0.09 -1.69 6.23 -101.05 -0.63 -2.32 16 20 C -0.10 -1.69 9.55 36.00 0.34 -1.34 16 21 C -0.09 -1.41 6.75 -26.85 -0.18 -1.59 16 22 C -0.12 -2.14 7.16 -25.07 -0.18 -2.32 16 23 C -0.12 -2.47 4.37 -26.85 -0.12 -2.59 16 24 H 0.06 1.11 6.17 -51.93 -0.32 0.79 16 25 H 0.06 1.38 5.60 -51.93 -0.29 1.09 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.09 1.70 5.91 -51.93 -0.31 1.39 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.22 6.64 -51.93 -0.34 0.88 16 32 H 0.08 1.51 5.82 -51.93 -0.30 1.20 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.13 6.51 -51.93 -0.34 0.79 16 35 H 0.04 0.92 5.44 -51.93 -0.28 0.64 16 36 H 0.07 1.56 3.74 -51.93 -0.19 1.37 16 37 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.52 6.15 -51.93 -0.32 1.21 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.15 3.48 3.38 -51.93 -0.18 3.30 16 46 H 0.07 1.48 6.83 -51.93 -0.35 1.12 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -25.29 333.39 -7.88 -33.17 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -7.28 Total: 8.65 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -1.11 Total: -15.12 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.46 Total: -34.13 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.06 Total: -12.35 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -25.29 -7.88 -33.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348526992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.402 kcal (2) G-P(sol) polarization free energy of solvation -25.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds