Wall clock time and date at job start Tue Mar 31 2020 01:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46829 * 2 1 4 4 C 1.53001 * 109.47455 * 184.29920 * 3 2 1 5 5 C 1.53004 * 109.47454 * 64.29673 * 3 2 1 6 6 N 1.46501 * 109.47369 * 304.29859 * 3 2 1 7 7 C 1.46499 * 120.00360 * 124.00864 * 6 3 2 8 8 C 1.50704 * 109.47365 * 263.85875 * 7 6 3 9 9 H 1.08002 * 119.99765 * 3.92729 * 8 7 6 10 10 C 1.37874 * 120.00141 * 183.92965 * 8 7 6 11 11 N 1.31516 * 119.99763 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99918 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47423 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47033 * 119.99906 * 12 10 8 15 15 H 1.48504 * 109.47228 * 239.99919 * 12 10 8 16 16 C 1.34780 * 119.99848 * 304.01064 * 6 3 2 17 17 O 1.21610 * 119.99754 * 4.88969 * 16 6 3 18 18 C 1.47100 * 120.00108 * 184.88590 * 16 6 3 19 19 C 1.32608 * 124.62249 * 172.89437 * 18 16 6 20 20 C 1.50695 * 124.61990 * 0.28891 * 19 18 16 21 21 C 1.51117 * 110.75888 * 180.26398 * 19 18 16 22 22 C 1.54575 * 104.84131 * 343.40274 * 21 19 18 23 23 C 1.51112 * 124.61878 * 353.19854 * 18 16 6 24 24 H 1.08993 * 109.47324 * 307.03670 * 1 2 3 25 25 H 1.08999 * 109.47524 * 67.04080 * 1 2 3 26 26 H 1.09005 * 109.46884 * 187.03509 * 1 2 3 27 27 H 1.08997 * 109.47552 * 240.00363 * 2 1 3 28 28 H 1.09000 * 109.47454 * 119.99550 * 2 1 3 29 29 H 1.08998 * 109.47695 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.46524 * 300.00167 * 4 3 2 31 31 H 1.09006 * 109.46853 * 59.99820 * 4 3 2 32 32 H 1.09001 * 109.46753 * 303.61242 * 5 3 2 33 33 H 1.08999 * 109.46477 * 63.60684 * 5 3 2 34 34 H 1.08997 * 109.47388 * 183.60462 * 5 3 2 35 35 H 1.09004 * 109.46521 * 23.85722 * 7 6 3 36 36 H 1.08995 * 109.47209 * 143.85326 * 7 6 3 37 37 H 0.97005 * 119.99477 * 180.02562 * 11 10 8 38 38 H 1.09005 * 109.47421 * 89.99628 * 20 19 18 39 39 H 1.08998 * 109.47383 * 209.99911 * 20 19 18 40 40 H 1.09004 * 109.47058 * 329.99937 * 20 19 18 41 41 H 1.08998 * 110.36247 * 224.56080 * 21 19 18 42 42 H 1.09007 * 110.36095 * 102.24708 * 21 19 18 43 43 H 1.09001 * 110.98284 * 266.92752 * 22 21 19 44 44 H 1.08997 * 111.01236 * 143.14069 * 22 21 19 45 45 H 1.09002 * 110.36497 * 315.17104 * 23 18 16 46 46 H 1.09000 * 110.36962 * 77.49038 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5661 1.4440 -0.1081 5 6 1.6201 2.1320 1.2998 6 7 1.4689 2.1624 -1.1410 7 6 0.7128 3.3982 -0.9236 8 6 -0.7604 3.0842 -0.8760 9 1 -1.0961 2.0592 -0.9321 10 6 -1.6795 4.1054 -0.7608 11 7 -1.2707 5.3535 -0.6920 12 14 -3.5056 3.7161 -0.7026 13 1 -3.7019 2.2471 -0.7963 14 1 -4.0766 4.2107 0.5760 15 1 -4.1900 4.3811 -1.8404 16 6 1.6390 1.6876 -2.3909 17 8 2.1889 0.6170 -2.5650 18 6 1.1596 2.4644 -3.5444 19 6 1.3950 2.1543 -4.8120 20 6 2.1850 0.9545 -5.2673 21 6 0.7626 3.1675 -5.7378 22 6 -0.2600 3.9229 -4.8586 23 6 0.3371 3.7283 -3.4462 24 1 -0.3633 0.6189 0.8203 25 1 -0.3634 0.4009 -0.9462 26 1 -0.3633 -1.0200 0.1259 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9294 2.4717 -0.1086 30 1 3.9909 0.9084 0.7409 31 1 3.8652 0.9529 -1.0342 32 1 0.5370 2.0744 1.4081 33 1 2.0966 1.6351 2.1448 34 1 1.9275 3.1773 1.2724 35 1 1.0188 3.8499 0.0202 36 1 0.9101 4.0932 -1.7397 37 1 -1.9174 6.0719 -0.6107 38 1 1.5134 0.1063 -5.4004 39 1 2.6765 1.1807 -6.2135 40 1 2.9367 0.7084 -4.5172 41 1 0.2563 2.6645 -6.5616 42 1 1.5171 3.8559 -6.1188 43 1 -1.2480 3.4681 -4.9308 44 1 -0.2985 4.9794 -5.1240 45 1 -0.4588 3.6068 -2.7114 46 1 0.9717 4.5745 -3.1827 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348526992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:18 Heat of formation + Delta-G solvation = -21.207737 kcal Electronic energy + Delta-G solvation = -24429.513025 eV Core-core repulsion = 21319.496663 eV Total energy + Delta-G solvation = -3110.016362 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.55788 -39.19809 -37.61411 -35.54339 -33.74884 -31.99210 -31.41910 -29.52896 -29.43533 -27.88375 -26.35746 -24.71908 -24.33300 -22.86906 -21.81852 -19.66000 -18.77624 -18.23496 -16.88270 -16.66675 -16.42227 -16.12440 -15.91556 -15.61855 -15.27467 -14.46447 -14.33597 -14.22994 -13.99575 -13.78231 -13.56995 -13.37813 -13.23832 -13.14918 -12.91564 -12.87381 -12.70682 -12.51565 -12.46385 -12.28727 -12.13222 -11.95360 -11.94293 -11.77388 -11.68910 -11.42243 -11.22936 -10.77197 -10.47506 -10.03941 -9.56436 -9.03091 -8.08220 -6.14224 0.64426 1.39231 1.45519 1.53133 2.37507 2.55202 2.60368 3.19911 3.70680 3.86946 3.92761 4.12692 4.18641 4.29207 4.35855 4.39014 4.50239 4.69313 4.70257 4.73890 4.79633 4.81509 4.85697 4.87334 4.92744 4.98347 5.06096 5.09345 5.14317 5.17152 5.21924 5.26484 5.30862 5.40565 5.44168 5.45545 5.56023 5.63262 5.66684 5.82951 5.87501 6.03791 6.16226 6.30610 6.75104 7.04385 7.46033 7.62719 8.94991 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011985 B = 0.010291 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.656524 B = 2720.089013 C = 4227.099357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 C 0.165 3.835 4 C -0.148 4.148 5 C -0.142 4.142 6 N -0.581 5.581 7 C 0.214 3.786 8 C -0.515 4.515 9 H 0.059 0.941 10 C 0.033 3.967 11 N -0.909 5.909 12 Si 0.932 3.068 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.280 1.280 16 C 0.559 3.441 17 O -0.581 6.581 18 C -0.202 4.202 19 C -0.073 4.073 20 C -0.103 4.103 21 C -0.085 4.085 22 C -0.124 4.124 23 C -0.116 4.116 24 H 0.053 0.947 25 H 0.031 0.969 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.025 0.975 36 H 0.057 0.943 37 H 0.264 0.736 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.122 0.878 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.037 -4.517 -3.914 7.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C 0.081 3.919 4 C -0.206 4.206 5 C -0.199 4.199 6 N -0.311 5.311 7 C 0.094 3.906 8 C -0.553 4.553 9 H 0.077 0.923 10 C -0.168 4.168 11 N -0.549 5.549 12 Si 0.759 3.241 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.206 1.206 16 C 0.351 3.649 17 O -0.466 6.466 18 C -0.205 4.205 19 C -0.075 4.075 20 C -0.159 4.159 21 C -0.121 4.121 22 C -0.161 4.161 23 C -0.152 4.152 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.139 0.861 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.247 -4.843 -3.922 8.147 hybrid contribution -1.237 0.285 0.330 1.311 sum 4.010 -4.558 -3.592 7.054 Atomic orbital electron populations 1.21734 0.96248 1.00267 1.01167 1.21867 0.95862 0.95829 1.02719 1.20499 0.92991 0.92146 0.86242 1.22080 0.94366 1.01482 1.02645 1.22068 1.02273 1.00019 0.95578 1.48169 1.51745 1.26256 1.04896 1.20099 0.89766 0.82197 0.98508 1.21647 0.91819 0.93226 1.48641 0.92326 1.25368 1.01331 0.94889 0.95186 1.70009 1.35161 0.99248 1.50465 0.85904 0.82429 0.78148 0.77642 1.20023 1.20918 1.20568 1.18165 0.78431 0.84753 0.83600 1.90531 1.46983 1.22934 1.86131 1.21861 1.04904 1.00057 0.93660 1.23042 0.94683 0.95947 0.93847 1.20655 0.99317 0.94151 1.01811 1.21351 0.97892 0.95746 0.97136 1.22441 0.98252 1.00600 0.94811 1.22063 1.00666 0.92739 0.99750 0.92764 0.95036 0.92848 0.91320 0.90186 0.93367 0.89831 0.93094 0.92344 0.89878 0.92998 0.95665 0.92568 0.92681 0.91202 0.89808 0.91604 0.88974 0.88822 0.92061 0.90385 0.86107 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 8.69 71.98 0.63 -4.49 16 2 C -0.12 -4.37 4.60 30.59 0.14 -4.23 16 3 C 0.17 6.02 0.73 3.61 0.00 6.03 16 4 C -0.15 -4.80 8.46 71.98 0.61 -4.19 16 5 C -0.14 -4.88 7.14 71.98 0.51 -4.37 16 6 N -0.58 -24.55 1.69 -783.28 -1.32 -25.88 16 7 C 0.21 9.99 4.13 85.63 0.35 10.34 16 8 C -0.51 -25.38 6.63 25.60 0.17 -25.21 16 9 H 0.06 3.01 5.16 -2.91 -0.02 2.99 16 10 C 0.03 1.65 4.79 84.65 0.41 2.06 16 11 N -0.91 -47.59 13.29 21.45 0.28 -47.31 16 12 Si 0.93 41.10 29.54 68.60 2.03 43.13 16 13 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 14 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 15 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 16 C 0.56 24.21 6.58 86.57 0.57 24.78 16 17 O -0.58 -25.56 10.55 -4.06 -0.04 -25.60 16 18 C -0.20 -8.21 5.98 -18.57 -0.11 -8.32 16 19 C -0.07 -2.49 6.23 -17.48 -0.11 -2.59 16 20 C -0.10 -3.09 9.55 71.23 0.68 -2.41 16 21 C -0.08 -2.35 6.75 30.52 0.21 -2.15 16 22 C -0.12 -4.08 7.16 31.67 0.23 -3.86 16 23 C -0.12 -4.79 4.37 30.52 0.13 -4.66 16 24 H 0.05 2.05 6.17 -2.39 -0.01 2.03 16 25 H 0.03 1.36 5.60 -2.39 -0.01 1.35 16 26 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 27 H 0.07 2.68 5.91 -2.39 -0.01 2.66 16 28 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.05 1.82 6.64 -2.38 -0.02 1.80 16 32 H 0.06 2.24 5.82 -2.39 -0.01 2.22 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 1.87 6.51 -2.39 -0.02 1.86 16 35 H 0.03 1.24 5.44 -2.38 -0.01 1.23 16 36 H 0.06 2.77 3.74 -2.39 -0.01 2.76 16 37 H 0.26 13.28 8.31 -92.70 -0.77 12.51 16 38 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 2.27 6.15 -2.38 -0.01 2.26 16 41 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 43 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.12 5.75 3.38 -2.39 -0.01 5.74 16 46 H 0.05 2.30 6.83 -2.39 -0.02 2.28 16 Total: -1.00 -55.55 333.39 6.34 -49.22 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.97 Total: 29.69 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 4.42 Total: -23.25 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -1.04 Total: -73.18 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.04 Total: -25.60 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -55.55 6.34 -49.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348526992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.009 kcal (2) G-P(sol) polarization free energy of solvation -55.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds