Wall clock time and date at job start Tue Mar 31 2020 01:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47342 * 2 1 4 4 C 1.53000 * 109.47426 * 173.25513 * 3 2 1 5 5 C 1.52999 * 109.47035 * 187.59979 * 4 3 2 6 6 C 1.53000 * 109.47496 * 293.26064 * 3 2 1 7 7 N 1.46493 * 109.47366 * 171.48047 * 6 3 2 8 8 C 1.46498 * 120.00269 * 319.48432 * 7 6 3 9 9 C 1.50696 * 109.47628 * 265.51428 * 8 7 6 10 10 H 1.08004 * 119.99299 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00432 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99721 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00220 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47066 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46898 * 119.99892 * 13 11 9 16 16 H 1.48497 * 109.47295 * 240.00002 * 13 11 9 17 17 C 1.34779 * 119.99881 * 139.48821 * 7 6 3 18 18 O 1.21612 * 120.00046 * 186.16378 * 17 7 6 19 19 C 1.47107 * 119.99941 * 6.16839 * 17 7 6 20 20 C 1.32610 * 124.61580 * 185.12382 * 19 17 7 21 21 C 1.51116 * 110.75729 * 179.73637 * 20 19 17 22 22 C 1.54581 * 104.83945 * 16.82745 * 21 20 19 23 23 C 1.51103 * 124.62063 * 5.24002 * 19 17 7 24 24 H 1.09002 * 109.47461 * 185.63748 * 1 2 3 25 25 H 1.09000 * 109.47776 * 305.63930 * 1 2 3 26 26 H 1.09005 * 109.47565 * 65.63998 * 1 2 3 27 27 H 1.09007 * 109.47083 * 240.00358 * 2 1 3 28 28 H 1.08996 * 109.47390 * 120.00122 * 2 1 3 29 29 H 1.09009 * 109.47066 * 53.25785 * 3 2 1 30 30 H 1.08994 * 109.47180 * 307.60154 * 4 3 2 31 31 H 1.09000 * 109.47042 * 67.60128 * 4 3 2 32 32 H 1.09000 * 109.46954 * 55.48701 * 5 4 3 33 33 H 1.08999 * 109.46909 * 175.47825 * 5 4 3 34 34 H 1.08996 * 109.47401 * 295.48243 * 5 4 3 35 35 H 1.09005 * 109.46854 * 51.47554 * 6 3 2 36 36 H 1.09006 * 109.46619 * 291.48260 * 6 3 2 37 37 H 1.09006 * 109.46732 * 25.51371 * 8 7 6 38 38 H 1.08998 * 109.47020 * 145.50986 * 8 7 6 39 39 H 0.96996 * 120.00248 * 179.97438 * 12 11 9 40 40 H 1.07996 * 124.62788 * 0.02562 * 20 19 17 41 41 H 1.08996 * 110.36887 * 135.66836 * 21 20 19 42 42 H 1.08998 * 110.36497 * 257.98773 * 21 20 19 43 43 H 1.09002 * 110.98403 * 93.07014 * 22 21 20 44 44 H 1.08997 * 110.98675 * 216.87695 * 22 21 20 45 45 H 1.08996 * 110.50142 * 44.70762 * 23 19 17 46 46 H 1.09006 * 110.27425 * 282.46950 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5605 1.4458 0.1694 5 6 4.0493 2.8831 0.3594 6 6 1.6729 2.1133 -1.3252 7 7 1.9774 3.5442 -1.2491 8 6 1.6864 4.2908 -0.0227 9 6 0.3319 4.9410 -0.1397 10 1 -0.2534 4.8113 -1.0380 11 6 -0.1600 5.7012 0.9000 12 7 0.5526 5.8586 1.9941 13 14 -1.8387 6.5077 0.7546 14 1 -2.4333 6.1784 -0.5657 15 1 -2.7246 6.0049 1.8352 16 1 -1.6928 7.9803 0.8790 17 6 2.5252 4.1738 -2.3073 18 8 2.8813 5.3324 -2.2081 19 6 2.6923 3.4596 -3.5825 20 6 3.3053 3.9553 -4.6489 21 6 3.3027 2.9549 -5.7814 22 6 2.2183 1.9230 -5.3957 23 6 2.1868 2.0623 -3.8565 24 1 -0.3634 -1.0227 0.1010 25 1 -0.3635 0.5988 0.8351 26 1 -0.3634 0.4239 -0.9362 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.5814 1.9900 0.8236 30 1 3.8301 0.8519 1.0427 31 1 4.0260 1.0181 -0.7186 32 1 3.5242 3.3374 1.1996 33 1 5.1207 2.8790 0.5600 34 1 3.8514 3.4569 -0.5460 35 1 0.6087 1.9779 -1.5184 36 1 2.2491 1.6616 -2.1328 37 1 1.6897 3.6085 0.8275 38 1 2.4463 5.0582 0.1245 39 1 0.2067 6.3938 2.7254 40 1 3.7501 4.9381 -4.6995 41 1 3.0433 3.4449 -6.7199 42 1 4.2758 2.4704 -5.8618 43 1 1.2548 2.1880 -5.8312 44 1 2.5147 0.9164 -5.6906 45 1 1.1686 1.9451 -3.4857 46 1 2.8448 1.3255 -3.3955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348803988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:22 Heat of formation + Delta-G solvation = -11.872425 kcal Electronic energy + Delta-G solvation = -23683.340970 eV Core-core repulsion = 20573.729417 eV Total energy + Delta-G solvation = -3109.611553 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.03479 -37.73168 -36.84531 -33.90570 -32.49152 -31.64348 -29.51299 -28.94580 -27.48977 -26.68756 -24.47732 -23.25972 -21.57437 -21.37035 -20.18013 -19.03278 -17.94928 -16.53341 -16.39615 -15.66679 -15.33140 -14.98718 -14.51544 -14.21532 -13.74948 -13.45134 -13.28771 -12.87483 -12.79822 -12.34620 -12.23459 -12.01603 -11.94918 -11.86109 -11.58334 -11.44223 -11.26655 -11.16789 -11.11601 -10.89593 -10.81347 -10.55584 -10.46468 -10.28175 -10.20407 -9.99135 -9.70813 -9.26714 -8.87103 -8.69638 -8.37026 -7.40629 -6.00146 -4.03732 1.82029 3.31375 3.39123 3.43370 3.98463 4.05705 4.48260 4.62361 4.69422 4.96204 5.07736 5.11307 5.16773 5.34199 5.35992 5.41963 5.51979 5.64036 5.67816 5.73764 5.79028 5.81491 5.85054 5.89293 5.93504 6.01267 6.09148 6.14907 6.17710 6.22324 6.37144 6.38871 6.44746 6.54277 6.59351 6.65906 6.79387 6.80284 7.01083 7.24516 7.53339 7.63244 7.97639 8.30055 8.51305 8.95575 9.17175 9.60847 11.07470 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.007022 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.559808 B = 3986.457676 C = 4879.817936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.113 4.113 4 C -0.107 4.107 5 C -0.169 4.169 6 C 0.087 3.913 7 N -0.583 5.583 8 C 0.242 3.758 9 C -0.524 4.524 10 H 0.055 0.945 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.894 3.106 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.552 3.448 18 O -0.544 6.544 19 C -0.176 4.176 20 C -0.101 4.101 21 C -0.102 4.102 22 C -0.128 4.128 23 C -0.094 4.094 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.046 0.954 38 H 0.041 0.959 39 H 0.262 0.738 40 H 0.134 0.866 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.212 -13.612 -9.890 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.131 4.131 4 C -0.145 4.145 5 C -0.227 4.227 6 C -0.036 4.036 7 N -0.313 5.313 8 C 0.124 3.876 9 C -0.563 4.563 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.534 5.534 13 Si 0.722 3.278 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.209 1.209 17 C 0.340 3.660 18 O -0.423 6.423 19 C -0.179 4.179 20 C -0.121 4.121 21 C -0.139 4.139 22 C -0.166 4.166 23 C -0.131 4.131 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.152 0.848 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.367 -12.922 -9.616 16.689 hybrid contribution -1.052 0.549 0.137 1.194 sum 3.316 -12.373 -9.479 15.935 Atomic orbital electron populations 1.21831 0.95863 1.00854 1.02638 1.21471 0.95947 0.96175 1.01369 1.21690 0.96055 0.95632 0.99762 1.21466 0.94965 0.97635 1.00400 1.22299 0.99225 0.96743 1.04400 1.22535 1.00663 0.82042 0.98372 1.48114 1.58922 1.08661 1.15624 1.19496 0.96251 0.91488 0.80401 1.21534 1.02382 1.30776 1.01562 0.92647 1.24896 0.97662 0.96225 0.95240 1.69933 1.37496 1.40283 1.05727 0.86500 0.84030 0.79345 0.77906 1.19871 1.21023 1.20930 1.17809 0.78774 0.86194 0.83212 1.90755 1.50786 1.17053 1.83710 1.22135 1.03205 0.96993 0.95570 1.23887 0.95741 0.98748 0.93685 1.21409 0.99526 0.95491 0.97471 1.22530 0.99188 0.99010 0.95836 1.21706 1.01893 0.94027 0.95441 0.93424 0.92198 0.92485 0.92501 0.92167 0.88929 0.92818 0.93131 0.91509 0.94539 0.90718 0.92270 0.88539 0.93665 0.94063 0.92875 0.84779 0.90800 0.90253 0.90997 0.90881 0.89927 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.58 37.15 0.36 -1.57 16 2 C -0.11 -1.37 5.39 -26.74 -0.14 -1.51 16 3 C -0.11 -1.74 1.85 -90.62 -0.17 -1.91 16 4 C -0.11 -1.59 5.38 -26.73 -0.14 -1.73 16 5 C -0.17 -3.05 8.14 37.16 0.30 -2.75 16 6 C 0.09 1.43 3.72 -4.05 -0.02 1.41 16 7 N -0.58 -12.37 1.29 -176.46 -0.23 -12.60 16 8 C 0.24 6.24 2.72 -5.20 -0.01 6.23 16 9 C -0.52 -14.98 9.35 -34.44 -0.32 -15.30 16 10 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 13 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 14 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 17 C 0.55 12.06 6.33 -12.66 -0.08 11.98 16 18 O -0.54 -14.27 16.39 5.27 0.09 -14.18 16 19 C -0.18 -2.93 5.94 -102.73 -0.61 -3.54 16 20 C -0.10 -1.47 10.43 -36.01 -0.38 -1.84 16 21 C -0.10 -1.07 6.80 -26.85 -0.18 -1.25 16 22 C -0.13 -1.29 7.17 -25.07 -0.18 -1.46 16 23 C -0.09 -1.18 4.39 -26.85 -0.12 -1.30 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.71 6.71 -51.93 -0.35 0.36 16 27 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 29 H 0.09 1.74 5.85 -51.92 -0.30 1.44 16 30 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 31 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 32 H 0.07 1.35 6.37 -51.93 -0.33 1.02 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.52 4.28 -51.93 -0.22 1.30 16 35 H 0.06 0.99 6.03 -51.93 -0.31 0.68 16 36 H 0.10 1.35 3.05 -55.59 -0.17 1.18 16 37 H 0.05 1.16 4.25 -51.93 -0.22 0.94 16 38 H 0.04 1.22 7.25 -51.93 -0.38 0.84 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.13 2.02 8.04 -52.49 -0.42 1.60 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 1.06 6.36 -51.93 -0.33 0.73 16 46 H 0.08 0.94 6.68 -51.93 -0.35 0.59 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -32.44 344.90 -8.59 -41.04 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.57 Total: 2.14 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -1.79 Total: -12.89 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.51 Total: -38.48 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.09 Total: -14.18 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.44 -8.59 -41.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348803988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.165 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds