Wall clock time and date at job start Tue Mar 31 2020 01:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47309 * 2 1 4 4 C 1.52999 * 109.47234 * 59.99874 * 3 2 1 5 5 C 1.52998 * 109.46822 * 299.99679 * 3 2 1 6 6 C 1.52995 * 109.47060 * 180.02562 * 3 2 1 7 7 C 1.53000 * 109.47271 * 179.97438 * 6 3 2 8 8 N 1.46899 * 109.47145 * 180.16375 * 7 6 3 9 9 C 1.46896 * 111.00178 * 287.84825 * 8 7 6 10 10 C 1.50700 * 109.47647 * 298.92804 * 9 8 7 11 11 H 1.08009 * 119.99490 * 4.73579 * 10 9 8 12 12 C 1.37874 * 120.00764 * 184.73052 * 10 9 8 13 13 N 1.31510 * 120.00435 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 119.99398 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.46866 * 90.00296 * 14 12 10 16 16 H 1.48507 * 109.47037 * 209.99749 * 14 12 10 17 17 H 1.48493 * 109.47513 * 330.00322 * 14 12 10 18 18 C 1.46907 * 110.99748 * 163.90097 * 8 7 6 19 19 C 1.50704 * 109.46801 * 190.00015 * 18 8 7 20 20 C 1.34514 * 125.79023 * 89.99968 * 19 18 8 21 21 C 1.41382 * 106.84229 * 179.97438 * 20 19 18 22 22 C 1.34512 * 106.83601 * 359.97438 * 21 20 19 23 23 O 1.34297 * 125.78842 * 269.68912 * 19 18 8 24 24 H 1.08992 * 109.47311 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46847 * 300.00473 * 1 2 3 26 26 H 1.09005 * 109.46693 * 60.00123 * 1 2 3 27 27 H 1.08997 * 109.46847 * 239.99527 * 2 1 3 28 28 H 1.09005 * 109.46693 * 119.99877 * 2 1 3 29 29 H 1.08996 * 109.47062 * 180.02562 * 4 3 2 30 30 H 1.08999 * 109.46736 * 300.00164 * 4 3 2 31 31 H 1.08993 * 109.46936 * 59.99856 * 4 3 2 32 32 H 1.08997 * 109.47284 * 300.00443 * 5 3 2 33 33 H 1.09003 * 109.46922 * 60.00242 * 5 3 2 34 34 H 1.09005 * 109.47187 * 180.02562 * 5 3 2 35 35 H 1.09006 * 109.47500 * 59.99909 * 6 3 2 36 36 H 1.09002 * 109.47516 * 299.99866 * 6 3 2 37 37 H 1.09005 * 109.46813 * 60.16756 * 7 6 3 38 38 H 1.09001 * 109.47044 * 300.16856 * 7 6 3 39 39 H 1.09002 * 109.47272 * 58.92776 * 9 8 7 40 40 H 1.09001 * 109.47264 * 178.92952 * 9 8 7 41 41 H 0.97002 * 120.00114 * 180.02562 * 13 12 10 42 42 H 1.08997 * 109.47547 * 69.99715 * 18 8 7 43 43 H 1.09001 * 109.46857 * 309.99339 * 18 8 7 44 44 H 1.08003 * 126.57819 * 0.03336 * 20 19 18 45 45 H 1.07994 * 126.57766 * 179.97438 * 21 20 19 46 46 H 1.08001 * 125.78806 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1638 1.2492 5 6 1.5301 2.1637 -1.2493 6 6 3.5700 1.4424 -0.0006 7 6 4.0801 2.8849 -0.0013 8 7 5.5491 2.8848 -0.0059 9 6 6.0796 2.4636 1.2976 10 6 5.6215 3.4273 2.3617 11 1 4.9369 4.2240 2.1102 12 6 6.0760 3.2921 3.6564 13 7 5.6758 4.1328 4.5851 14 14 7.2593 1.9136 4.0915 15 1 8.6560 2.3858 3.9140 16 1 7.0495 1.5088 5.5048 17 1 7.0132 0.7506 3.2017 18 6 6.0744 4.2027 -0.3870 19 6 7.5600 4.1032 -0.6197 20 6 8.1553 3.8191 -1.7920 21 6 9.5494 3.8290 -1.5566 22 6 9.7225 4.1190 -0.2545 23 8 8.5143 4.2887 0.3068 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.8931 3.1915 1.2489 30 1 0.4401 2.1638 1.2491 31 1 1.8934 1.6500 2.1391 32 1 1.8934 1.6498 -2.1392 33 1 0.4401 2.1637 -1.2493 34 1 1.8939 3.1912 -1.2496 35 1 3.9331 0.9287 -0.8909 36 1 3.9338 0.9285 0.8891 37 1 3.7196 3.3981 0.8902 38 1 3.7140 3.3993 -0.8898 39 1 5.7153 1.4634 1.5321 40 1 7.1690 2.4542 1.2607 41 1 5.9959 4.0378 5.4958 42 1 5.8790 4.9170 0.4129 43 1 5.5851 4.5383 -1.3014 44 1 7.6629 3.6224 -2.7329 45 1 10.3261 3.6400 -2.2827 46 1 10.6722 4.2048 0.2526 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357923060.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:12 Heat of formation + Delta-G solvation = -17.676956 kcal Electronic energy + Delta-G solvation = -22956.495714 eV Core-core repulsion = 19846.632458 eV Total energy + Delta-G solvation = -3109.863256 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.35319 -39.82105 -37.97024 -34.60274 -33.80927 -32.61176 -31.25505 -29.74033 -28.51811 -28.10775 -26.21079 -25.57912 -23.62727 -22.48473 -21.54838 -20.95706 -19.37277 -18.92251 -17.99623 -17.33399 -16.69388 -16.32586 -16.16760 -15.61991 -15.49774 -15.13381 -14.87530 -14.65925 -14.43664 -13.82081 -13.56836 -13.55576 -13.40096 -13.24418 -13.12820 -12.98727 -12.75646 -12.61863 -12.56025 -12.35872 -12.20295 -12.01857 -11.91618 -11.71909 -11.46114 -11.18786 -11.14528 -11.03921 -10.79125 -10.68898 -9.35094 -8.95544 -8.32093 -6.33409 0.92521 1.28443 1.29209 1.40176 1.82877 2.30388 2.31392 3.04301 3.35773 3.89647 3.94471 4.00174 4.05275 4.25101 4.29187 4.35546 4.50880 4.54249 4.59822 4.62583 4.68541 4.79484 4.85303 4.91695 4.94191 4.96856 5.03064 5.06389 5.15443 5.16579 5.17302 5.21689 5.24204 5.26048 5.33103 5.34277 5.43698 5.46551 5.50844 5.69243 5.71314 5.78279 6.06152 6.29076 6.38647 6.45058 6.70269 7.31950 8.83954 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013470 B = 0.006126 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.149589 B = 4569.897902 C = 5996.777338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.058 4.058 4 C -0.139 4.139 5 C -0.138 4.138 6 C -0.091 4.091 7 C 0.059 3.941 8 N -0.525 5.525 9 C 0.168 3.832 10 C -0.532 4.532 11 H 0.042 0.958 12 C 0.019 3.981 13 N -0.944 5.944 14 Si 0.932 3.068 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.253 1.253 18 C 0.134 3.866 19 C -0.012 4.012 20 C -0.205 4.205 21 C -0.215 4.215 22 C -0.066 4.066 23 O -0.202 6.202 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.035 0.965 37 H 0.027 0.973 38 H 0.082 0.918 39 H 0.025 0.975 40 H 0.015 0.985 41 H 0.264 0.736 42 H 0.028 0.972 43 H 0.118 0.882 44 H 0.166 0.834 45 H 0.176 0.824 46 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.809 -5.302 -14.370 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.059 4.059 4 C -0.197 4.197 5 C -0.195 4.195 6 C -0.129 4.129 7 C -0.069 4.069 8 N -0.248 5.248 9 C 0.040 3.960 10 C -0.571 4.571 11 H 0.060 0.940 12 C -0.179 4.179 13 N -0.584 5.584 14 Si 0.756 3.244 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.177 1.177 18 C 0.006 3.994 19 C -0.062 4.062 20 C -0.224 4.224 21 C -0.234 4.234 22 C -0.133 4.133 23 O -0.099 6.099 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.101 0.899 39 H 0.043 0.957 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.047 0.953 43 H 0.136 0.864 44 H 0.183 0.817 45 H 0.193 0.807 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -2.711 -5.534 -14.250 15.525 hybrid contribution 0.593 0.373 1.650 1.793 sum -2.118 -5.161 -12.600 13.779 Atomic orbital electron populations 1.21859 0.94832 1.01860 1.02249 1.21527 0.96770 0.94915 1.01573 1.20496 0.93584 0.96023 0.95775 1.21913 1.01041 0.99658 0.97045 1.21918 1.01356 0.99895 0.96292 1.21471 0.94691 0.95681 1.01075 1.22176 0.86295 0.98013 1.00376 1.62545 1.08362 1.24803 1.29083 1.19917 0.94623 0.95191 0.86260 1.21744 1.27364 1.13887 0.94080 0.94035 1.25684 0.97667 0.98037 0.96487 1.70048 1.46622 1.39073 1.02704 0.85936 0.79883 0.80850 0.77695 1.19705 1.20722 1.17678 1.20466 0.86007 0.91788 1.01116 1.22557 0.91003 1.04999 0.87670 1.21793 0.94247 1.07609 0.98785 1.22120 0.96910 1.07692 0.96700 1.24735 0.87776 1.06026 0.94811 1.84155 1.16091 1.69491 1.40148 0.92264 0.92970 0.91474 0.91287 0.93470 0.94149 0.91173 0.94911 0.91786 0.91389 0.93083 0.91132 0.94583 0.95486 0.89947 0.95716 0.96693 0.92712 0.95347 0.86367 0.81682 0.80670 0.75970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.21 71.98 0.66 -2.18 16 2 C -0.11 -2.54 4.99 30.60 0.15 -2.38 16 3 C -0.06 -1.54 0.57 -52.18 -0.03 -1.57 16 4 C -0.14 -4.23 7.77 71.98 0.56 -3.67 16 5 C -0.14 -2.99 7.77 71.98 0.56 -2.43 16 6 C -0.09 -2.97 4.31 30.59 0.13 -2.84 16 7 C 0.06 2.14 4.10 86.30 0.35 2.50 16 8 N -0.53 -21.53 4.66 -905.34 -4.22 -25.75 16 9 C 0.17 8.26 3.86 85.56 0.33 8.59 16 10 C -0.53 -30.43 7.89 25.60 0.20 -30.23 16 11 H 0.04 2.61 6.20 -2.91 -0.02 2.59 16 12 C 0.02 1.15 5.47 84.65 0.46 1.61 16 13 N -0.94 -59.57 13.96 21.45 0.30 -59.27 16 14 Si 0.93 46.05 27.38 68.60 1.88 47.93 16 15 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 16 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 17 H -0.25 -11.88 6.68 99.48 0.66 -11.22 16 18 C 0.13 5.22 5.31 85.56 0.45 5.67 16 19 C -0.01 -0.46 5.88 24.83 0.15 -0.32 16 20 C -0.20 -6.41 10.81 22.19 0.24 -6.17 16 21 C -0.22 -6.02 10.91 22.19 0.24 -5.78 16 22 C -0.07 -2.08 12.09 66.97 0.81 -1.27 16 23 O -0.20 -8.48 9.98 -2.41 -0.02 -8.50 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.05 1.03 6.43 -2.39 -0.02 1.02 16 26 H 0.07 1.11 6.43 -2.38 -0.02 1.10 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.04 1.37 6.44 -2.39 -0.02 1.35 16 30 H 0.07 1.78 6.43 -2.39 -0.02 1.76 16 31 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.27 6.43 -2.39 -0.02 1.25 16 34 H 0.05 1.17 6.42 -2.38 -0.02 1.15 16 35 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.04 1.37 6.76 -2.39 -0.02 1.36 16 37 H 0.03 1.18 4.45 -2.38 -0.01 1.17 16 38 H 0.08 2.55 6.08 -2.39 -0.01 2.53 16 39 H 0.02 1.24 6.06 -2.39 -0.01 1.23 16 40 H 0.01 0.78 5.84 -2.39 -0.01 0.76 16 41 H 0.26 15.69 8.31 -92.71 -0.77 14.91 16 42 H 0.03 1.31 6.58 -2.39 -0.02 1.30 16 43 H 0.12 3.68 7.86 -2.39 -0.02 3.66 16 44 H 0.17 4.24 8.06 -2.91 -0.02 4.22 16 45 H 0.18 3.53 8.06 -2.91 -0.02 3.51 16 46 H 0.22 5.13 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -68.70 347.55 4.12 -64.58 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.91 Total: 21.48 kcal Atomic # 6 Polarization: -45.75 SS G_CDS: 5.28 Total: -40.47 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -3.92 Total: -85.02 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.02 Total: -8.50 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.88 Total: 47.93 kcal Total: -68.70 4.12 -64.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357923060.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.905 kcal (2) G-P(sol) polarization free energy of solvation -68.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds