Wall clock time and date at job start Tue Mar 31 2020 02:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46802 * 2 1 4 4 H 1.08999 * 109.46827 * 303.40567 * 3 2 1 5 5 C 1.53006 * 109.46905 * 183.41297 * 3 2 1 6 6 C 1.53001 * 109.46919 * 69.64159 * 5 3 2 7 7 C 1.54265 * 110.03292 * 288.11815 * 6 5 3 8 8 C 1.54888 * 104.19658 * 217.11106 * 7 6 5 9 9 C 1.54892 * 102.75173 * 37.94046 * 8 7 6 10 10 C 1.53878 * 110.02682 * 170.95473 * 6 5 3 11 11 C 1.50694 * 109.47363 * 63.41120 * 3 2 1 12 12 O 1.21289 * 119.99961 * 49.33730 * 11 3 2 13 13 N 1.34777 * 120.00114 * 229.33478 * 11 3 2 14 14 C 1.37095 * 120.00126 * 184.19264 * 13 11 3 15 15 H 1.07999 * 119.99811 * 21.31756 * 14 13 11 16 16 C 1.38945 * 120.00300 * 201.30952 * 14 13 11 17 17 N 1.31416 * 120.00068 * 13.47810 * 16 14 13 18 18 Si 1.86804 * 120.00548 * 193.47474 * 16 14 13 19 19 H 1.48495 * 109.47585 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.46836 * 300.00520 * 18 16 14 21 21 H 1.48503 * 109.46841 * 59.99938 * 18 16 14 22 22 C 1.46500 * 119.99649 * 4.20084 * 13 11 3 23 23 C 1.53003 * 117.49784 * 308.43059 * 22 13 11 24 24 C 1.53005 * 117.49262 * 239.81039 * 22 13 11 25 25 H 1.09005 * 109.46874 * 184.05555 * 1 2 3 26 26 H 1.09006 * 109.47097 * 304.05147 * 1 2 3 27 27 H 1.08997 * 109.47344 * 64.05256 * 1 2 3 28 28 H 1.08996 * 109.47092 * 239.99820 * 2 1 3 29 29 H 1.08994 * 109.47291 * 119.99852 * 2 1 3 30 30 H 1.08993 * 109.46801 * 189.64281 * 5 3 2 31 31 H 1.09003 * 109.46727 * 309.64036 * 5 3 2 32 32 H 1.08992 * 110.02052 * 49.56239 * 6 5 3 33 33 H 1.09000 * 110.48780 * 335.78469 * 7 6 5 34 34 H 1.08991 * 110.48624 * 98.42992 * 7 6 5 35 35 H 1.09001 * 110.75594 * 279.62834 * 8 7 6 36 36 H 1.08995 * 110.91891 * 156.32942 * 8 7 6 37 37 H 1.08996 * 110.48708 * 203.38505 * 9 8 7 38 38 H 1.09005 * 110.48714 * 80.73510 * 9 8 7 39 39 H 1.09004 * 110.03111 * 238.56754 * 10 6 5 40 40 H 1.08995 * 110.03458 * 359.97438 * 10 6 5 41 41 H 0.96998 * 120.00391 * 174.95676 * 17 16 14 42 42 H 1.09000 * 115.55187 * 94.14579 * 22 13 11 43 43 H 1.08997 * 117.49634 * 0.02562 * 23 22 13 44 44 H 1.09004 * 117.49550 * 145.02842 * 23 22 13 45 45 H 1.09002 * 117.49700 * 214.97968 * 24 22 13 46 46 H 1.08994 * 117.50091 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6276 1.9736 -0.8579 5 6 3.5676 1.4434 -0.0859 6 6 4.0005 0.9688 -1.4745 7 6 3.7441 -0.5455 -1.6191 8 6 4.9453 -1.0563 -2.4530 9 6 6.1252 -0.2174 -1.9022 10 6 5.5145 1.1774 -1.6544 11 6 1.6078 2.1281 1.2705 12 8 1.7944 1.5922 2.3424 13 7 1.0141 3.3368 1.2156 14 6 0.6989 3.9989 2.3740 15 1 1.2075 3.7501 3.2937 16 6 -0.2748 4.9901 2.3648 17 7 -1.0748 5.1157 1.3298 18 14 -0.4468 6.1442 3.8236 19 1 -1.5513 7.1035 3.5684 20 1 -0.7488 5.3559 5.0454 21 1 0.8226 6.8901 4.0169 22 6 0.7055 3.9430 -0.0819 23 6 1.8375 4.0317 -1.1073 24 6 1.3457 5.2959 -0.3995 25 1 -0.3633 -1.0251 0.0727 26 1 -0.3634 0.5755 0.8515 27 1 -0.3634 0.4496 -0.9240 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 3.9405 2.4531 0.0857 31 1 3.9743 0.7724 0.6707 32 1 3.4544 1.5158 -2.2429 33 1 3.7279 -1.0249 -0.6404 34 1 2.8084 -0.7251 -2.1484 35 1 4.7918 -0.8571 -3.5136 36 1 5.1140 -2.1193 -2.2816 37 1 6.9270 -0.1576 -2.6381 38 1 6.4935 -0.6438 -0.9690 39 1 5.7030 1.8250 -2.5107 40 1 5.9406 1.6171 -0.7527 41 1 -1.8009 5.7584 1.3532 42 1 -0.3015 3.7621 -0.4577 43 1 2.8117 3.6387 -0.8167 44 1 1.5754 3.9090 -2.1582 45 1 0.7599 6.0048 -0.9848 46 1 1.9960 5.7350 0.3569 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358801230.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:46 Heat of formation + Delta-G solvation = -21.952445 kcal Electronic energy + Delta-G solvation = -23641.176299 eV Core-core repulsion = 20531.127644 eV Total energy + Delta-G solvation = -3110.048655 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.60384 -38.09524 -36.09934 -34.37494 -32.85478 -30.93321 -30.87767 -28.65861 -27.44821 -24.99072 -23.25357 -22.23416 -21.41204 -20.93544 -20.22911 -19.44699 -18.08208 -16.94852 -16.15417 -15.69700 -15.10568 -14.88083 -14.21769 -14.13154 -13.80048 -13.60247 -13.31942 -13.17003 -12.86867 -12.53157 -12.12307 -11.88721 -11.53167 -11.34258 -11.15396 -11.08784 -11.05582 -11.01426 -10.74194 -10.60947 -10.46465 -10.42350 -10.35976 -10.23798 -10.16387 -9.92498 -9.90125 -9.69540 -9.20890 -8.79957 -8.11893 -7.62008 -6.22285 -3.77664 3.22168 3.27432 3.31395 3.98337 4.16600 4.65278 4.70939 4.73013 4.76643 4.92594 5.19886 5.31481 5.37031 5.46972 5.50674 5.65431 5.69631 5.73779 5.76107 5.81303 5.82700 5.88290 5.92285 6.00413 6.03719 6.09663 6.12946 6.13965 6.30205 6.32729 6.35103 6.37795 6.42969 6.46736 6.57084 6.64869 6.70171 6.74047 6.87059 6.91750 6.95992 7.29175 7.64942 8.20038 8.58916 9.28604 9.53224 10.10867 10.82417 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025213 B = 0.005099 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.256706 B = 5490.339935 C = 5764.748740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.106 4.106 4 H 0.091 0.909 5 C -0.095 4.095 6 C -0.089 4.089 7 C -0.121 4.121 8 C -0.128 4.128 9 C -0.124 4.124 10 C -0.122 4.122 11 C 0.463 3.537 12 O -0.590 6.590 13 N -0.424 5.424 14 C -0.309 4.309 15 H 0.096 0.904 16 C 0.039 3.961 17 N -0.875 5.875 18 Si 0.919 3.081 19 H -0.285 1.285 20 H -0.274 1.274 21 H -0.275 1.275 22 C 0.139 3.861 23 C -0.227 4.227 24 C -0.157 4.157 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.266 0.734 42 H 0.113 0.887 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.990 -6.434 -10.295 14.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.128 4.128 4 H 0.109 0.891 5 C -0.133 4.133 6 C -0.107 4.107 7 C -0.159 4.159 8 C -0.166 4.166 9 C -0.162 4.162 10 C -0.160 4.160 11 C 0.252 3.748 12 O -0.475 6.475 13 N -0.142 5.142 14 C -0.437 4.437 15 H 0.113 0.887 16 C -0.165 4.165 17 N -0.514 5.514 18 Si 0.746 3.254 19 H -0.210 1.210 20 H -0.200 1.200 21 H -0.201 1.201 22 C 0.034 3.966 23 C -0.265 4.265 24 C -0.195 4.195 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.130 0.870 43 H 0.111 0.889 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.934 -6.488 -9.821 14.194 hybrid contribution -0.338 0.919 0.679 1.192 sum 7.595 -5.569 -9.141 13.125 Atomic orbital electron populations 1.21767 0.96325 1.00702 1.02073 1.21885 0.95792 0.95740 1.02573 1.21466 0.95867 0.96984 0.98458 0.89064 1.21600 0.94566 1.01184 0.95966 1.21802 0.95297 0.96009 0.97632 1.22745 0.97297 0.95566 1.00245 1.22556 0.95563 0.99010 0.99461 1.22346 0.97480 0.95827 1.00514 1.22232 0.95402 0.96882 1.01449 1.19981 0.83353 0.81417 0.90038 1.90493 1.60619 1.65035 1.31309 1.43167 1.51993 1.14598 1.04488 1.19515 1.20154 1.15312 0.88707 0.88655 1.25196 0.95122 0.98401 0.97741 1.69843 1.15823 1.35885 1.29859 0.86107 0.77759 0.79972 0.81515 1.21029 1.19987 1.20077 1.21166 0.94209 0.96918 0.84342 1.23701 1.00489 1.04701 0.97629 1.22805 1.03224 0.91533 1.01926 0.93599 0.92134 0.93296 0.90372 0.91747 0.92146 0.91544 0.90973 0.90903 0.91155 0.91882 0.92035 0.92275 0.91846 0.92147 0.91740 0.92346 0.86965 0.88903 0.89469 0.89802 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.78 37.16 0.36 -2.25 16 2 C -0.12 -2.05 4.36 -26.73 -0.12 -2.17 16 3 C -0.11 -1.95 1.20 -91.77 -0.11 -2.06 16 4 H 0.09 1.61 4.65 -51.93 -0.24 1.37 16 5 C -0.10 -1.53 3.33 -26.73 -0.09 -1.62 16 6 C -0.09 -1.11 2.90 -89.50 -0.26 -1.37 16 7 C -0.12 -1.38 4.31 -25.07 -0.11 -1.49 16 8 C -0.13 -1.26 6.91 -24.74 -0.17 -1.43 16 9 C -0.12 -1.24 6.83 -25.07 -0.17 -1.41 16 10 C -0.12 -1.37 6.45 -25.61 -0.17 -1.54 16 11 C 0.46 11.24 5.18 -10.99 -0.06 11.18 16 12 O -0.59 -16.53 16.27 5.55 0.09 -16.44 16 13 N -0.42 -10.78 2.93 -107.73 -0.32 -11.10 16 14 C -0.31 -8.65 9.13 -14.94 -0.14 -8.79 16 15 H 0.10 2.82 7.44 -52.49 -0.39 2.43 16 16 C 0.04 1.04 4.98 -17.47 -0.09 0.95 16 17 N -0.88 -23.06 10.66 55.50 0.59 -22.47 16 18 Si 0.92 21.00 29.58 -169.99 -5.03 15.98 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 C 0.14 3.09 3.44 -67.93 -0.23 2.86 16 23 C -0.23 -4.04 7.81 -26.73 -0.21 -4.25 16 24 C -0.16 -3.20 9.41 -26.73 -0.25 -3.45 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.28 7.20 -51.93 -0.37 0.90 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.07 3.82 -51.93 -0.20 0.87 16 29 H 0.06 1.18 7.85 -51.93 -0.41 0.77 16 30 H 0.06 1.03 6.72 -51.93 -0.35 0.68 16 31 H 0.07 1.13 7.87 -51.93 -0.41 0.72 16 32 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 33 H 0.07 0.89 6.85 -51.93 -0.36 0.54 16 34 H 0.07 0.77 6.63 -51.93 -0.34 0.42 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.76 7.66 -51.93 -0.40 0.36 16 41 H 0.27 6.73 8.32 -40.82 -0.34 6.39 16 42 H 0.11 2.66 7.59 -51.93 -0.39 2.26 16 43 H 0.09 1.63 5.17 -51.93 -0.27 1.36 16 44 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 46 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -29.69 343.98 -9.19 -38.88 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.91 Total: 6.82 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -1.80 Total: -16.85 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.28 Total: -33.57 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.09 Total: -16.44 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.69 -9.19 -38.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358801230.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.924 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds