Wall clock time and date at job start Tue Mar 31 2020 02:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46802 * 2 1 4 4 H 1.08999 * 109.46827 * 303.40567 * 3 2 1 5 5 C 1.53006 * 109.46905 * 183.41297 * 3 2 1 6 6 C 1.53001 * 109.46919 * 69.64159 * 5 3 2 7 7 C 1.54265 * 110.03292 * 288.11815 * 6 5 3 8 8 C 1.54888 * 104.19658 * 217.11106 * 7 6 5 9 9 C 1.54892 * 102.75173 * 37.94046 * 8 7 6 10 10 C 1.53878 * 110.02682 * 170.95473 * 6 5 3 11 11 C 1.50694 * 109.47363 * 63.41120 * 3 2 1 12 12 O 1.21289 * 119.99961 * 49.33730 * 11 3 2 13 13 N 1.34777 * 120.00114 * 229.33478 * 11 3 2 14 14 C 1.37095 * 120.00126 * 184.19264 * 13 11 3 15 15 H 1.07999 * 119.99811 * 21.31756 * 14 13 11 16 16 C 1.38945 * 120.00300 * 201.30952 * 14 13 11 17 17 N 1.31416 * 120.00068 * 13.47810 * 16 14 13 18 18 Si 1.86804 * 120.00548 * 193.47474 * 16 14 13 19 19 H 1.48495 * 109.47585 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.46836 * 300.00520 * 18 16 14 21 21 H 1.48503 * 109.46841 * 59.99938 * 18 16 14 22 22 C 1.46500 * 119.99649 * 4.20084 * 13 11 3 23 23 C 1.53003 * 117.49784 * 308.43059 * 22 13 11 24 24 C 1.53005 * 117.49262 * 239.81039 * 22 13 11 25 25 H 1.09005 * 109.46874 * 184.05555 * 1 2 3 26 26 H 1.09006 * 109.47097 * 304.05147 * 1 2 3 27 27 H 1.08997 * 109.47344 * 64.05256 * 1 2 3 28 28 H 1.08996 * 109.47092 * 239.99820 * 2 1 3 29 29 H 1.08994 * 109.47291 * 119.99852 * 2 1 3 30 30 H 1.08993 * 109.46801 * 189.64281 * 5 3 2 31 31 H 1.09003 * 109.46727 * 309.64036 * 5 3 2 32 32 H 1.08992 * 110.02052 * 49.56239 * 6 5 3 33 33 H 1.09000 * 110.48780 * 335.78469 * 7 6 5 34 34 H 1.08991 * 110.48624 * 98.42992 * 7 6 5 35 35 H 1.09001 * 110.75594 * 279.62834 * 8 7 6 36 36 H 1.08995 * 110.91891 * 156.32942 * 8 7 6 37 37 H 1.08996 * 110.48708 * 203.38505 * 9 8 7 38 38 H 1.09005 * 110.48714 * 80.73510 * 9 8 7 39 39 H 1.09004 * 110.03111 * 238.56754 * 10 6 5 40 40 H 1.08995 * 110.03458 * 359.97438 * 10 6 5 41 41 H 0.96998 * 120.00391 * 174.95676 * 17 16 14 42 42 H 1.09000 * 115.55187 * 94.14579 * 22 13 11 43 43 H 1.08997 * 117.49634 * 0.02562 * 23 22 13 44 44 H 1.09004 * 117.49550 * 145.02842 * 23 22 13 45 45 H 1.09002 * 117.49700 * 214.97968 * 24 22 13 46 46 H 1.08994 * 117.50091 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6276 1.9736 -0.8579 5 6 3.5676 1.4434 -0.0859 6 6 4.0005 0.9688 -1.4745 7 6 3.7441 -0.5455 -1.6191 8 6 4.9453 -1.0563 -2.4530 9 6 6.1252 -0.2174 -1.9022 10 6 5.5145 1.1774 -1.6544 11 6 1.6078 2.1281 1.2705 12 8 1.7944 1.5922 2.3424 13 7 1.0141 3.3368 1.2156 14 6 0.6989 3.9989 2.3740 15 1 1.2075 3.7501 3.2937 16 6 -0.2748 4.9901 2.3648 17 7 -1.0748 5.1157 1.3298 18 14 -0.4468 6.1442 3.8236 19 1 -1.5513 7.1035 3.5684 20 1 -0.7488 5.3559 5.0454 21 1 0.8226 6.8901 4.0169 22 6 0.7055 3.9430 -0.0819 23 6 1.8375 4.0317 -1.1073 24 6 1.3457 5.2959 -0.3995 25 1 -0.3633 -1.0251 0.0727 26 1 -0.3634 0.5755 0.8515 27 1 -0.3634 0.4496 -0.9240 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 3.9405 2.4531 0.0857 31 1 3.9743 0.7724 0.6707 32 1 3.4544 1.5158 -2.2429 33 1 3.7279 -1.0249 -0.6404 34 1 2.8084 -0.7251 -2.1484 35 1 4.7918 -0.8571 -3.5136 36 1 5.1140 -2.1193 -2.2816 37 1 6.9270 -0.1576 -2.6381 38 1 6.4935 -0.6438 -0.9690 39 1 5.7030 1.8250 -2.5107 40 1 5.9406 1.6171 -0.7527 41 1 -1.8009 5.7584 1.3532 42 1 -0.3015 3.7621 -0.4577 43 1 2.8117 3.6387 -0.8167 44 1 1.5754 3.9090 -2.1582 45 1 0.7599 6.0048 -0.9848 46 1 1.9960 5.7350 0.3569 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358801230.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:46 Heat of formation + Delta-G solvation = -37.178078 kcal Electronic energy + Delta-G solvation = -23641.836532 eV Core-core repulsion = 20531.127644 eV Total energy + Delta-G solvation = -3110.708888 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.21315 -39.30093 -37.88765 -35.85876 -34.73838 -32.92040 -32.08939 -29.52808 -28.78377 -26.85089 -24.52423 -23.83120 -23.12834 -22.41163 -21.22121 -20.46978 -19.79040 -18.85041 -17.76365 -17.00644 -16.81380 -16.06333 -15.91119 -15.82336 -15.26955 -15.03743 -14.73988 -14.46364 -14.05777 -13.88851 -13.76050 -13.55224 -13.08621 -12.92883 -12.77936 -12.46637 -12.41313 -12.20892 -12.19063 -12.10347 -11.88756 -11.85771 -11.53990 -11.52450 -11.37743 -11.29254 -11.16066 -11.06842 -10.86635 -10.63166 -10.01785 -9.62332 -8.25800 -5.89957 1.35890 1.37608 1.46844 2.10345 2.27320 2.98728 3.12339 3.20047 3.71121 3.79412 3.82275 3.99279 4.11504 4.22753 4.25767 4.36898 4.40175 4.50399 4.60806 4.64662 4.66638 4.71984 4.77044 4.83014 4.86317 4.89966 5.00867 5.04138 5.07700 5.11299 5.14537 5.19903 5.23542 5.26348 5.35486 5.40738 5.44869 5.46823 5.47630 5.48636 5.56148 5.58989 5.68281 6.12893 6.58552 7.24602 7.57523 8.15242 8.75575 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.025213 B = 0.005099 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.256706 B = 5490.339935 C = 5764.748740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.093 4.093 4 H 0.105 0.895 5 C -0.088 4.088 6 C -0.083 4.083 7 C -0.126 4.126 8 C -0.122 4.122 9 C -0.124 4.124 10 C -0.123 4.123 11 C 0.451 3.549 12 O -0.642 6.642 13 N -0.435 5.435 14 C -0.349 4.349 15 H 0.062 0.938 16 C 0.013 3.987 17 N -0.881 5.881 18 Si 0.975 3.025 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.271 1.271 22 C 0.109 3.891 23 C -0.181 4.181 24 C -0.161 4.161 25 H 0.069 0.931 26 H 0.009 0.991 27 H 0.066 0.934 28 H 0.120 0.880 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.271 0.729 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.129 0.871 45 H 0.097 0.903 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.569 -6.627 -13.428 17.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.115 4.115 4 H 0.123 0.877 5 C -0.126 4.126 6 C -0.101 4.101 7 C -0.163 4.163 8 C -0.159 4.159 9 C -0.162 4.162 10 C -0.161 4.161 11 C 0.242 3.758 12 O -0.530 6.530 13 N -0.153 5.153 14 C -0.477 4.477 15 H 0.080 0.920 16 C -0.191 4.191 17 N -0.519 5.519 18 Si 0.800 3.200 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.196 1.196 22 C 0.004 3.996 23 C -0.219 4.219 24 C -0.199 4.199 25 H 0.088 0.912 26 H 0.029 0.971 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.147 0.853 45 H 0.115 0.885 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.506 -6.666 -12.991 16.899 hybrid contribution -0.547 0.973 1.699 2.033 sum 7.959 -5.693 -11.292 14.942 Atomic orbital electron populations 1.21754 0.96681 1.01482 1.00658 1.21949 0.95395 0.94680 1.03486 1.21456 0.97441 0.97328 0.95228 0.87728 1.21550 0.92558 1.00176 0.98286 1.21775 0.96407 0.96990 0.94956 1.22747 0.98849 0.94490 1.00230 1.22528 0.94178 0.99418 0.99785 1.22359 0.98105 0.94929 1.00769 1.22236 0.94330 0.98008 1.01479 1.21110 0.82167 0.81026 0.91523 1.90441 1.62518 1.66245 1.33841 1.43372 1.51779 1.15078 1.05058 1.19404 1.21663 1.17430 0.89161 0.92014 1.25807 0.94268 0.98768 1.00229 1.69927 1.15526 1.35775 1.30638 0.85279 0.78202 0.78200 0.78349 1.19231 1.20677 1.19644 1.21107 0.95234 0.98940 0.84291 1.23770 0.98653 1.01007 0.98453 1.22770 1.03131 0.91803 1.02176 0.91228 0.97128 0.91528 0.86225 0.93966 0.93573 0.93307 0.89682 0.92158 0.89951 0.90497 0.91126 0.90713 0.92518 0.90708 0.93049 0.91906 0.88617 0.88519 0.85284 0.88485 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 9.78 71.98 0.70 -4.36 16 2 C -0.12 -3.87 4.36 30.59 0.13 -3.74 16 3 C -0.09 -3.41 1.20 -11.54 -0.01 -3.42 16 4 H 0.10 3.50 4.65 -2.39 -0.01 3.49 16 5 C -0.09 -2.78 3.33 30.60 0.10 -2.67 16 6 C -0.08 -1.85 2.90 -10.07 -0.03 -1.88 16 7 C -0.13 -2.48 4.31 31.67 0.14 -2.34 16 8 C -0.12 -1.93 6.91 31.89 0.22 -1.71 16 9 C -0.12 -2.12 6.83 31.67 0.22 -1.90 16 10 C -0.12 -2.45 6.45 31.32 0.20 -2.25 16 11 C 0.45 22.90 5.18 87.66 0.45 23.35 16 12 O -0.64 -38.47 16.27 -3.06 -0.05 -38.52 16 13 N -0.44 -23.06 2.93 -613.14 -1.80 -24.85 16 14 C -0.35 -20.54 9.13 84.04 0.77 -19.77 16 15 H 0.06 3.95 7.44 -2.91 -0.02 3.93 16 16 C 0.01 0.68 4.98 84.92 0.42 1.10 16 17 N -0.88 -46.84 10.66 21.66 0.23 -46.61 16 18 Si 0.98 43.85 29.58 68.60 2.03 45.88 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 C 0.11 4.85 3.44 44.99 0.15 5.00 16 23 C -0.18 -6.02 7.81 30.60 0.24 -5.78 16 24 C -0.16 -6.43 9.41 30.60 0.29 -6.14 16 25 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 26 H 0.01 0.43 7.20 -2.38 -0.02 0.41 16 27 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 28 H 0.12 2.94 3.82 -2.39 -0.01 2.93 16 29 H 0.04 1.57 7.85 -2.39 -0.02 1.55 16 30 H 0.05 1.58 6.72 -2.39 -0.02 1.56 16 31 H 0.05 1.70 7.87 -2.39 -0.02 1.68 16 32 H 0.08 1.73 8.04 -2.39 -0.02 1.71 16 33 H 0.06 1.36 6.85 -2.39 -0.02 1.34 16 34 H 0.08 1.43 6.63 -2.39 -0.02 1.41 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.05 1.15 7.66 -2.39 -0.02 1.14 16 41 H 0.27 13.61 8.32 -92.71 -0.77 12.84 16 42 H 0.10 4.55 7.59 -2.39 -0.02 4.53 16 43 H 0.10 3.18 5.17 -2.39 -0.01 3.17 16 44 H 0.13 3.27 8.14 -2.38 -0.02 3.25 16 45 H 0.10 3.57 8.14 -2.39 -0.02 3.56 16 46 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -69.29 343.98 5.35 -63.94 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.94 Total: 26.68 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: 4.00 Total: -26.52 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -1.57 Total: -71.46 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -0.05 Total: -38.52 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -69.29 5.35 -63.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358801230.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.764 kcal (2) G-P(sol) polarization free energy of solvation -69.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds