Wall clock time and date at job start Tue Mar 31 2020 02:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47001 * 2 1 4 4 H 1.09000 * 109.47426 * 175.30085 * 3 2 1 5 5 C 1.53004 * 109.46599 * 295.29489 * 3 2 1 6 6 C 1.52994 * 109.47373 * 295.66366 * 5 3 2 7 7 C 1.54891 * 110.48827 * 290.66134 * 6 5 3 8 8 C 1.54888 * 102.74724 * 203.37959 * 7 6 5 9 9 C 1.54262 * 104.19727 * 37.94269 * 8 7 6 10 10 C 1.53871 * 106.60158 * 336.39024 * 9 8 7 11 11 C 1.50695 * 109.47521 * 55.29603 * 3 2 1 12 12 O 1.21293 * 120.00341 * 247.78789 * 11 3 2 13 13 N 1.34781 * 119.99926 * 67.78092 * 11 3 2 14 14 C 1.37096 * 119.99858 * 184.67064 * 13 11 3 15 15 H 1.08000 * 120.00181 * 330.49415 * 14 13 11 16 16 C 1.38952 * 119.99512 * 150.49170 * 14 13 11 17 17 N 1.31405 * 120.00437 * 2.47321 * 16 14 13 18 18 Si 1.86805 * 119.99653 * 182.47082 * 16 14 13 19 19 H 1.48504 * 109.47129 * 90.00196 * 18 16 14 20 20 H 1.48499 * 109.46960 * 210.00249 * 18 16 14 21 21 H 1.48503 * 109.47083 * 330.00096 * 18 16 14 22 22 C 1.46497 * 119.99851 * 4.67598 * 13 11 3 23 23 C 1.52995 * 117.49675 * 131.66723 * 22 13 11 24 24 C 1.52999 * 60.00136 * 252.50731 * 23 22 13 25 25 H 1.09000 * 109.46917 * 64.98735 * 1 2 3 26 26 H 1.08997 * 109.46871 * 184.98434 * 1 2 3 27 27 H 1.08995 * 109.47348 * 304.98584 * 1 2 3 28 28 H 1.08999 * 109.47890 * 239.99812 * 2 1 3 29 29 H 1.08998 * 109.47007 * 119.99421 * 2 1 3 30 30 H 1.09009 * 109.46946 * 175.66141 * 5 3 2 31 31 H 1.08998 * 109.47105 * 55.66597 * 5 3 2 32 32 H 1.08998 * 110.53991 * 53.27800 * 6 5 3 33 33 H 1.09002 * 110.75248 * 85.06606 * 7 6 5 34 34 H 1.08997 * 110.75574 * 321.69619 * 7 6 5 35 35 H 1.09003 * 110.48588 * 279.26212 * 8 7 6 36 36 H 1.09000 * 110.48761 * 156.62419 * 8 7 6 37 37 H 1.09001 * 110.03384 * 95.67704 * 9 8 7 38 38 H 1.09005 * 110.03268 * 217.10045 * 9 8 7 39 39 H 1.08996 * 110.03198 * 119.28435 * 10 9 8 40 40 H 1.09004 * 110.03228 * 240.67090 * 10 9 8 41 41 H 0.96995 * 120.00076 * 185.00371 * 17 16 14 42 42 H 1.08997 * 115.54903 * 277.37650 * 22 13 11 43 43 H 1.09001 * 117.50251 * 359.97438 * 23 22 13 44 44 H 1.08999 * 117.49974 * 145.02438 * 23 22 13 45 45 H 1.08996 * 117.50484 * 252.51009 * 24 23 22 46 46 H 1.09011 * 117.51925 * 107.47846 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1267 1.4438 0.0842 5 6 1.6288 2.1287 -1.3043 6 6 2.3198 1.4400 -2.4828 7 6 3.8424 1.7234 -2.4595 8 6 4.2517 1.5137 -3.9385 9 6 3.0708 2.0938 -4.7438 10 6 1.8424 2.0470 -3.8183 11 6 1.4448 2.1858 1.1680 12 8 0.6474 3.0793 0.9756 13 7 1.7985 1.8577 2.4265 14 6 1.1870 2.4673 3.4914 15 1 0.8112 3.4751 3.3939 16 6 1.0506 1.7883 4.6960 17 7 1.5507 0.5805 4.8298 18 14 0.1564 2.5926 6.1254 19 1 -1.2884 2.2563 6.0577 20 1 0.7211 2.0951 7.4055 21 1 0.3258 4.0660 6.0492 22 6 2.8365 0.8498 2.6564 23 6 3.9486 1.1948 3.6488 24 6 4.2463 1.1589 2.1485 25 1 -0.3633 0.4345 -0.9313 26 1 -0.3633 -1.0238 0.0893 27 1 -0.3634 0.5892 0.8419 28 1 1.8935 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.9245 3.1774 -1.2720 31 1 0.5479 2.0597 -1.4260 32 1 2.1312 0.3667 -2.4626 33 1 4.3575 1.0140 -1.8118 34 1 4.0397 2.7484 -2.1456 35 1 4.3752 0.4522 -4.1533 36 1 5.1694 2.0581 -4.1612 37 1 3.2839 3.1238 -5.0297 38 1 2.8919 1.4887 -5.6327 39 1 1.4594 3.0543 -3.6550 40 1 1.0671 1.4197 -4.2583 41 1 1.3933 0.0780 5.6444 42 1 2.5026 -0.1869 2.6146 43 1 3.9083 2.1719 4.1304 44 1 4.3466 0.3850 4.2603 45 1 4.8399 0.3256 1.7729 46 1 4.4013 2.1121 1.6428 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358801231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:50 Heat of formation + Delta-G solvation = -32.894979 kcal Electronic energy + Delta-G solvation = -23545.724928 eV Core-core repulsion = 20435.201769 eV Total energy + Delta-G solvation = -3110.523159 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.45461 -38.03966 -36.10613 -34.50936 -32.84840 -31.03740 -30.28896 -28.63184 -27.27336 -25.02322 -23.52629 -22.14907 -21.27864 -20.89969 -20.34442 -19.25378 -17.98207 -16.80565 -15.81400 -15.63514 -15.08399 -14.79089 -14.70472 -14.36740 -13.89975 -13.63033 -13.26677 -12.97069 -12.73949 -12.42011 -12.10771 -11.82470 -11.51946 -11.25288 -11.16874 -11.10701 -10.98107 -10.95977 -10.68919 -10.62193 -10.49729 -10.45678 -10.40474 -10.28640 -10.07604 -9.96505 -9.85932 -9.49758 -9.24583 -8.71391 -8.16630 -7.56836 -6.20759 -3.83803 3.21963 3.29287 3.33562 4.00392 4.18764 4.65612 4.74622 4.78890 4.84264 4.95765 5.16087 5.36121 5.42743 5.52935 5.60213 5.66571 5.70648 5.73098 5.73945 5.85070 5.88775 5.94014 5.95494 5.99029 6.12197 6.15251 6.19781 6.27878 6.31045 6.32389 6.34073 6.39732 6.40865 6.51165 6.56855 6.70691 6.83146 6.86774 6.88626 6.98887 7.05100 7.29524 7.63675 8.25857 8.60029 9.28251 9.51813 10.09907 10.83168 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026871 B = 0.004958 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.759990 B = 5646.049150 C = 6005.431383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.101 4.101 4 H 0.085 0.915 5 C -0.088 4.088 6 C -0.093 4.093 7 C -0.121 4.121 8 C -0.125 4.125 9 C -0.124 4.124 10 C -0.121 4.121 11 C 0.471 3.529 12 O -0.587 6.587 13 N -0.427 5.427 14 C -0.307 4.307 15 H 0.092 0.908 16 C 0.040 3.960 17 N -0.875 5.875 18 Si 0.917 3.083 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 C 0.142 3.858 23 C -0.129 4.129 24 C -0.233 4.233 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.264 0.736 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.503 -3.051 -12.101 13.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.122 4.122 4 H 0.103 0.897 5 C -0.126 4.126 6 C -0.111 4.111 7 C -0.158 4.158 8 C -0.163 4.163 9 C -0.162 4.162 10 C -0.159 4.159 11 C 0.260 3.740 12 O -0.471 6.471 13 N -0.146 5.146 14 C -0.435 4.435 15 H 0.110 0.890 16 C -0.163 4.163 17 N -0.514 5.514 18 Si 0.745 3.255 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.196 1.196 22 C 0.036 3.964 23 C -0.167 4.167 24 C -0.271 4.271 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.120 0.880 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.165 -2.714 -11.982 13.327 hybrid contribution -0.371 0.186 0.959 1.045 sum 4.794 -2.529 -11.023 12.283 Atomic orbital electron populations 1.21789 0.95942 1.00745 1.02311 1.21490 0.96363 0.95309 1.01761 1.21278 1.01071 0.95605 0.94263 0.89724 1.21392 1.00609 0.98853 0.91739 1.22101 0.94731 1.00096 0.94204 1.22590 0.95832 1.01708 0.95692 1.22355 0.97624 1.00488 0.95795 1.22125 0.95339 1.00579 0.98112 1.22203 0.97252 1.01211 0.95248 1.20039 0.84161 0.86046 0.83795 1.90504 1.38117 1.33594 1.84916 1.43061 1.31668 1.35558 1.04330 1.19508 1.35173 0.99481 0.89324 0.89017 1.25274 0.96620 0.95652 0.98781 1.69900 1.42678 1.10817 1.28001 0.86065 0.79668 0.79452 0.80355 1.20475 1.21079 1.19643 1.21004 0.81503 0.92573 1.01308 1.22592 1.01893 1.02202 0.89989 1.23602 1.02002 1.01992 0.99550 0.93111 0.93676 0.91711 0.92176 0.91247 0.91985 0.91385 0.90637 0.91559 0.91486 0.91969 0.92176 0.92244 0.92414 0.91737 0.92255 0.92518 0.87965 0.89557 0.89909 0.89755 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.33 37.16 0.35 -2.32 16 2 C -0.11 -1.87 5.40 -26.73 -0.14 -2.02 16 3 C -0.10 -1.84 1.71 -91.77 -0.16 -2.00 16 4 H 0.08 1.47 5.02 -51.93 -0.26 1.21 16 5 C -0.09 -1.46 3.18 -26.73 -0.09 -1.55 16 6 C -0.09 -1.21 2.72 -88.96 -0.24 -1.45 16 7 C -0.12 -1.46 5.61 -24.74 -0.14 -1.59 16 8 C -0.13 -1.28 6.83 -25.08 -0.17 -1.45 16 9 C -0.12 -1.26 6.80 -25.62 -0.17 -1.44 16 10 C -0.12 -1.42 6.37 -25.61 -0.16 -1.58 16 11 C 0.47 11.28 5.25 -10.99 -0.06 11.22 16 12 O -0.59 -16.11 15.77 5.55 0.09 -16.02 16 13 N -0.43 -10.70 2.93 -107.74 -0.32 -11.02 16 14 C -0.31 -8.48 8.80 -14.93 -0.13 -8.61 16 15 H 0.09 2.69 7.48 -52.49 -0.39 2.30 16 16 C 0.04 1.05 5.13 -17.47 -0.09 0.96 16 17 N -0.88 -22.64 10.13 55.50 0.56 -22.08 16 18 Si 0.92 20.95 29.56 -169.99 -5.02 15.93 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 C 0.14 3.10 2.53 -67.93 -0.17 2.93 16 23 C -0.13 -2.69 8.39 -26.73 -0.22 -2.92 16 24 C -0.23 -4.25 8.52 -26.73 -0.23 -4.48 16 25 H 0.05 0.83 6.71 -51.93 -0.35 0.48 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.40 6.89 -51.93 -0.36 1.05 16 28 H 0.06 0.85 6.23 -51.93 -0.32 0.52 16 29 H 0.07 1.24 5.64 -51.93 -0.29 0.94 16 30 H 0.06 1.11 7.98 -51.92 -0.41 0.70 16 31 H 0.07 1.21 6.45 -51.93 -0.33 0.87 16 32 H 0.08 0.96 6.24 -51.93 -0.32 0.64 16 33 H 0.07 0.78 7.94 -51.93 -0.41 0.37 16 34 H 0.07 0.86 7.98 -51.93 -0.41 0.44 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.79 7.84 -51.93 -0.41 0.38 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.26 6.59 8.32 -40.82 -0.34 6.25 16 42 H 0.10 2.31 6.66 -51.93 -0.35 1.97 16 43 H 0.09 1.96 8.00 -51.93 -0.42 1.55 16 44 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.08 1.51 7.78 -51.92 -0.40 1.11 16 LS Contribution 344.58 15.07 5.19 5.19 Total: -1.00 -28.84 344.58 -9.29 -38.13 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -7.97 Total: 6.16 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -1.83 Total: -16.29 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.25 Total: -33.10 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.09 Total: -16.02 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.84 -9.29 -38.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358801231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.236 kcal (2) G-P(sol) polarization free energy of solvation -28.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds