Wall clock time and date at job start Tue Mar 31 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47001 * 2 1 4 4 H 1.09000 * 109.47426 * 175.30085 * 3 2 1 5 5 C 1.53004 * 109.46599 * 295.29489 * 3 2 1 6 6 C 1.52994 * 109.47373 * 295.66366 * 5 3 2 7 7 C 1.54891 * 110.48827 * 290.66134 * 6 5 3 8 8 C 1.54888 * 102.74724 * 203.37959 * 7 6 5 9 9 C 1.54262 * 104.19727 * 37.94269 * 8 7 6 10 10 C 1.53871 * 106.60158 * 336.39024 * 9 8 7 11 11 C 1.50695 * 109.47521 * 55.29603 * 3 2 1 12 12 O 1.21293 * 120.00341 * 247.78789 * 11 3 2 13 13 N 1.34781 * 119.99926 * 67.78092 * 11 3 2 14 14 C 1.37096 * 119.99858 * 184.67064 * 13 11 3 15 15 H 1.08000 * 120.00181 * 330.49415 * 14 13 11 16 16 C 1.38952 * 119.99512 * 150.49170 * 14 13 11 17 17 N 1.31405 * 120.00437 * 2.47321 * 16 14 13 18 18 Si 1.86805 * 119.99653 * 182.47082 * 16 14 13 19 19 H 1.48504 * 109.47129 * 90.00196 * 18 16 14 20 20 H 1.48499 * 109.46960 * 210.00249 * 18 16 14 21 21 H 1.48503 * 109.47083 * 330.00096 * 18 16 14 22 22 C 1.46497 * 119.99851 * 4.67598 * 13 11 3 23 23 C 1.52995 * 117.49675 * 131.66723 * 22 13 11 24 24 C 1.52999 * 60.00136 * 252.50731 * 23 22 13 25 25 H 1.09000 * 109.46917 * 64.98735 * 1 2 3 26 26 H 1.08997 * 109.46871 * 184.98434 * 1 2 3 27 27 H 1.08995 * 109.47348 * 304.98584 * 1 2 3 28 28 H 1.08999 * 109.47890 * 239.99812 * 2 1 3 29 29 H 1.08998 * 109.47007 * 119.99421 * 2 1 3 30 30 H 1.09009 * 109.46946 * 175.66141 * 5 3 2 31 31 H 1.08998 * 109.47105 * 55.66597 * 5 3 2 32 32 H 1.08998 * 110.53991 * 53.27800 * 6 5 3 33 33 H 1.09002 * 110.75248 * 85.06606 * 7 6 5 34 34 H 1.08997 * 110.75574 * 321.69619 * 7 6 5 35 35 H 1.09003 * 110.48588 * 279.26212 * 8 7 6 36 36 H 1.09000 * 110.48761 * 156.62419 * 8 7 6 37 37 H 1.09001 * 110.03384 * 95.67704 * 9 8 7 38 38 H 1.09005 * 110.03268 * 217.10045 * 9 8 7 39 39 H 1.08996 * 110.03198 * 119.28435 * 10 9 8 40 40 H 1.09004 * 110.03228 * 240.67090 * 10 9 8 41 41 H 0.96995 * 120.00076 * 185.00371 * 17 16 14 42 42 H 1.08997 * 115.54903 * 277.37650 * 22 13 11 43 43 H 1.09001 * 117.50251 * 359.97438 * 23 22 13 44 44 H 1.08999 * 117.49974 * 145.02438 * 23 22 13 45 45 H 1.08996 * 117.50484 * 252.51009 * 24 23 22 46 46 H 1.09011 * 117.51925 * 107.47846 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1267 1.4438 0.0842 5 6 1.6288 2.1287 -1.3043 6 6 2.3198 1.4400 -2.4828 7 6 3.8424 1.7234 -2.4595 8 6 4.2517 1.5137 -3.9385 9 6 3.0708 2.0938 -4.7438 10 6 1.8424 2.0470 -3.8183 11 6 1.4448 2.1858 1.1680 12 8 0.6474 3.0793 0.9756 13 7 1.7985 1.8577 2.4265 14 6 1.1870 2.4673 3.4914 15 1 0.8112 3.4751 3.3939 16 6 1.0506 1.7883 4.6960 17 7 1.5507 0.5805 4.8298 18 14 0.1564 2.5926 6.1254 19 1 -1.2884 2.2563 6.0577 20 1 0.7211 2.0951 7.4055 21 1 0.3258 4.0660 6.0492 22 6 2.8365 0.8498 2.6564 23 6 3.9486 1.1948 3.6488 24 6 4.2463 1.1589 2.1485 25 1 -0.3633 0.4345 -0.9313 26 1 -0.3633 -1.0238 0.0893 27 1 -0.3634 0.5892 0.8419 28 1 1.8935 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.9245 3.1774 -1.2720 31 1 0.5479 2.0597 -1.4260 32 1 2.1312 0.3667 -2.4626 33 1 4.3575 1.0140 -1.8118 34 1 4.0397 2.7484 -2.1456 35 1 4.3752 0.4522 -4.1533 36 1 5.1694 2.0581 -4.1612 37 1 3.2839 3.1238 -5.0297 38 1 2.8919 1.4887 -5.6327 39 1 1.4594 3.0543 -3.6550 40 1 1.0671 1.4197 -4.2583 41 1 1.3933 0.0780 5.6444 42 1 2.5026 -0.1869 2.6146 43 1 3.9083 2.1719 4.1304 44 1 4.3466 0.3850 4.2603 45 1 4.8399 0.3256 1.7729 46 1 4.4013 2.1121 1.6428 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358801231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:49 Heat of formation + Delta-G solvation = -47.046064 kcal Electronic energy + Delta-G solvation = -23546.338565 eV Core-core repulsion = 20435.201769 eV Total energy + Delta-G solvation = -3111.136796 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.10396 -39.22545 -37.85076 -35.99746 -34.74888 -32.95080 -31.53028 -29.53619 -28.69177 -26.81051 -24.90646 -23.78309 -22.91083 -22.41733 -21.27550 -20.47142 -19.56509 -18.72863 -17.40979 -16.91577 -16.81877 -16.40237 -15.99133 -15.79559 -15.51764 -15.11126 -14.67061 -14.17142 -14.03297 -13.87734 -13.79069 -13.47966 -13.08021 -12.99564 -12.81774 -12.50152 -12.28072 -12.21156 -12.15245 -12.02639 -11.89468 -11.79299 -11.66159 -11.50664 -11.39512 -11.26091 -11.15647 -11.05113 -10.88243 -10.56052 -10.05838 -9.53708 -8.22176 -5.92701 1.35857 1.38725 1.48487 2.14109 2.29730 3.04813 3.10399 3.26759 3.73925 3.78833 3.87997 4.07301 4.13756 4.19168 4.28463 4.40240 4.44598 4.51814 4.58610 4.64300 4.69928 4.74103 4.79842 4.85904 4.87473 4.93500 4.95790 4.99180 5.09773 5.11680 5.19794 5.21041 5.26040 5.31565 5.37170 5.40085 5.44063 5.47782 5.48271 5.51958 5.60890 5.62065 5.70339 6.19845 6.62862 7.26782 7.58893 8.16684 8.78259 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026871 B = 0.004958 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.759990 B = 5646.049150 C = 6005.431383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.087 4.087 4 H 0.100 0.900 5 C -0.080 4.080 6 C -0.086 4.086 7 C -0.124 4.124 8 C -0.120 4.120 9 C -0.122 4.122 10 C -0.123 4.123 11 C 0.458 3.542 12 O -0.637 6.637 13 N -0.438 5.438 14 C -0.343 4.343 15 H 0.057 0.943 16 C 0.014 3.986 17 N -0.877 5.877 18 Si 0.971 3.029 19 H -0.280 1.280 20 H -0.268 1.268 21 H -0.278 1.278 22 C 0.120 3.880 23 C -0.137 4.137 24 C -0.190 4.190 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.013 0.987 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.269 0.731 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.095 0.905 45 H 0.127 0.873 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.265 -5.182 -13.533 16.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.109 4.109 4 H 0.118 0.882 5 C -0.118 4.118 6 C -0.105 4.105 7 C -0.161 4.161 8 C -0.157 4.157 9 C -0.160 4.160 10 C -0.161 4.161 11 C 0.249 3.751 12 O -0.524 6.524 13 N -0.156 5.156 14 C -0.471 4.471 15 H 0.075 0.925 16 C -0.189 4.189 17 N -0.515 5.515 18 Si 0.796 3.204 19 H -0.206 1.206 20 H -0.193 1.193 21 H -0.203 1.203 22 C 0.016 3.984 23 C -0.175 4.175 24 C -0.228 4.228 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.032 0.968 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.077 0.923 44 H 0.113 0.887 45 H 0.145 0.855 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.958 -4.874 -13.407 15.872 hybrid contribution -0.962 0.879 1.434 1.937 sum 5.996 -3.995 -11.973 13.974 Atomic orbital electron populations 1.21742 0.96913 1.01123 1.00600 1.21509 0.95427 0.94092 1.03310 1.21240 1.01386 0.96008 0.92216 0.88204 1.21309 0.99882 0.97937 0.92666 1.22053 0.95217 1.00261 0.92927 1.22608 0.94922 1.01159 0.97437 1.22341 0.97850 1.01485 0.94039 1.22125 0.94450 1.01109 0.98271 1.22213 0.98392 1.00498 0.95015 1.21102 0.83540 0.85533 0.84940 1.90455 1.40351 1.35839 1.85775 1.43245 1.32426 1.35783 1.04158 1.19353 1.37562 0.98963 0.91270 0.92462 1.25811 0.96761 0.96245 1.00077 1.69961 1.42009 1.10982 1.28513 0.85275 0.78488 0.78339 0.78300 1.20570 1.19279 1.20285 1.21014 0.82066 0.91452 1.03907 1.22523 1.02174 1.01147 0.91669 1.23630 0.98772 1.03239 0.97193 0.92104 0.91528 0.96775 0.88061 0.91988 0.94295 0.93210 0.89294 0.90768 0.92854 0.90629 0.91259 0.92176 0.90839 0.93190 0.91304 0.92086 0.88524 0.92298 0.88704 0.85481 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 9.33 71.98 0.67 -4.46 16 2 C -0.11 -3.36 5.40 30.60 0.17 -3.20 16 3 C -0.09 -3.16 1.71 -11.54 -0.02 -3.18 16 4 H 0.10 3.29 5.02 -2.39 -0.01 3.27 16 5 C -0.08 -2.65 3.18 30.59 0.10 -2.55 16 6 C -0.09 -2.05 2.72 -9.72 -0.03 -2.08 16 7 C -0.12 -2.64 5.61 31.89 0.18 -2.46 16 8 C -0.12 -2.02 6.83 31.67 0.22 -1.81 16 9 C -0.12 -2.13 6.80 31.32 0.21 -1.92 16 10 C -0.12 -2.65 6.37 31.32 0.20 -2.45 16 11 C 0.46 22.83 5.25 87.65 0.46 23.29 16 12 O -0.64 -37.24 15.77 -3.07 -0.05 -37.29 16 13 N -0.44 -22.70 2.93 -613.15 -1.80 -24.49 16 14 C -0.34 -19.91 8.80 84.04 0.74 -19.17 16 15 H 0.06 3.62 7.48 -2.91 -0.02 3.60 16 16 C 0.01 0.77 5.13 84.93 0.44 1.20 16 17 N -0.88 -45.49 10.13 21.66 0.22 -45.27 16 18 Si 0.97 43.80 29.56 68.60 2.03 45.83 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 22 C 0.12 5.23 2.53 44.99 0.11 5.34 16 23 C -0.14 -5.63 8.39 30.59 0.26 -5.38 16 24 C -0.19 -6.50 8.52 30.59 0.26 -6.24 16 25 H 0.06 1.96 6.71 -2.39 -0.02 1.95 16 26 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.01 0.60 6.89 -2.39 -0.02 0.58 16 28 H 0.10 2.43 6.23 -2.39 -0.01 2.41 16 29 H 0.06 2.09 5.64 -2.39 -0.01 2.07 16 30 H 0.04 1.44 7.98 -2.38 -0.02 1.42 16 31 H 0.05 1.81 6.45 -2.39 -0.02 1.79 16 32 H 0.09 1.90 6.24 -2.39 -0.01 1.89 16 33 H 0.07 1.47 7.94 -2.39 -0.02 1.45 16 34 H 0.05 1.28 7.98 -2.39 -0.02 1.26 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.07 8.14 -2.38 -0.02 1.06 16 39 H 0.05 1.20 7.84 -2.39 -0.02 1.19 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.27 13.24 8.32 -92.71 -0.77 12.47 16 42 H 0.10 4.30 6.66 -2.39 -0.02 4.29 16 43 H 0.06 2.73 8.00 -2.39 -0.02 2.71 16 44 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 45 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 46 H 0.08 2.78 7.78 -2.38 -0.02 2.76 16 Total: -1.00 -66.59 344.58 5.31 -61.28 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.94 Total: 24.99 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 3.96 Total: -25.05 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -1.58 Total: -69.76 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.05 Total: -37.29 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -66.59 5.31 -61.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358801231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.238 kcal (2) G-P(sol) polarization free energy of solvation -66.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds