Wall clock time and date at job start Tue Mar 31 2020 00:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99870 * 2 1 4 4 N 1.46500 * 109.47226 * 125.00405 * 3 2 1 5 5 C 1.46502 * 119.99677 * 267.11304 * 4 3 2 6 6 C 1.50702 * 109.47214 * 264.62504 * 5 4 3 7 7 H 1.07995 * 120.00019 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99780 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00530 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99583 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47024 * 60.00651 * 10 8 6 12 12 H 1.48498 * 109.46961 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47596 * 300.00384 * 10 8 6 14 14 C 1.34771 * 120.00297 * 87.11138 * 4 3 2 15 15 O 1.21283 * 119.99732 * 6.38958 * 14 4 3 16 16 C 1.50706 * 120.00240 * 186.39033 * 14 4 3 17 17 C 1.52993 * 109.47011 * 189.81536 * 16 14 4 18 18 C 1.53003 * 109.47194 * 300.00066 * 17 16 14 19 19 C 1.53002 * 109.47215 * 299.99891 * 18 17 16 20 20 C 1.52997 * 109.46940 * 180.02562 * 19 18 17 21 21 C 1.53012 * 109.46716 * 175.00296 * 20 19 18 22 22 C 1.53002 * 109.46655 * 60.00226 * 19 18 17 23 23 C 1.52998 * 109.46730 * 69.81516 * 16 14 4 24 24 H 1.07993 * 120.00474 * 359.97438 * 1 2 3 25 25 H 1.08006 * 119.99868 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00664 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47383 * 5.00508 * 3 2 1 28 28 H 1.09001 * 109.47466 * 245.00297 * 3 2 1 29 29 H 1.08997 * 109.47613 * 24.62975 * 5 4 3 30 30 H 1.09002 * 109.47122 * 144.62894 * 5 4 3 31 31 H 0.96995 * 120.00593 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.46994 * 309.81605 * 16 14 4 33 33 H 1.09003 * 109.47196 * 180.02562 * 17 16 14 34 34 H 1.09002 * 109.47547 * 60.00290 * 17 16 14 35 35 H 1.09005 * 109.46952 * 180.02562 * 18 17 16 36 36 H 1.08991 * 109.47227 * 60.00179 * 18 17 16 37 37 H 1.09000 * 109.47325 * 300.00419 * 19 18 17 38 38 H 1.08988 * 109.47308 * 55.00717 * 20 19 18 39 39 H 1.08997 * 109.47007 * 294.99943 * 20 19 18 40 40 H 1.08997 * 109.46694 * 60.00063 * 21 20 19 41 41 H 1.08994 * 109.47130 * 300.00118 * 21 20 19 42 42 H 1.09000 * 109.46362 * 179.97438 * 21 20 19 43 43 H 1.08991 * 109.47252 * 60.00039 * 22 19 18 44 44 H 1.09006 * 109.46635 * 180.02562 * 22 19 18 45 45 H 1.09000 * 109.46889 * 180.02562 * 23 16 14 46 46 H 1.09005 * 109.47405 * 299.99739 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5795 1.9226 2.4064 6 6 3.0393 3.3564 2.4689 7 1 3.5851 3.7849 1.6414 8 6 2.7623 4.1213 3.5820 9 7 2.0972 3.5997 4.5896 10 14 3.3316 5.8988 3.6590 11 1 2.7245 6.6620 2.5392 12 1 2.9118 6.4974 4.9515 13 1 4.8116 5.9499 3.5479 14 6 4.2306 0.8132 0.9992 15 8 4.6147 0.4299 -0.0855 16 6 5.1365 0.7095 2.1992 17 6 6.5449 0.3234 1.7431 18 6 6.4959 -1.0256 1.0229 19 6 5.9581 -2.0939 1.9771 20 6 5.9098 -3.4430 1.2570 21 6 5.4910 -4.5337 2.2451 22 6 4.5496 -1.7078 2.4331 23 6 4.5986 -0.3588 3.1533 24 1 -0.5400 0.9352 0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0897 28 1 2.6212 1.4027 -0.9314 29 1 1.4933 1.8855 2.4883 30 1 3.0251 1.3621 3.2283 31 1 1.9026 4.1377 5.3728 32 1 5.1713 1.6706 2.7122 33 1 7.2000 0.2480 2.6110 34 1 6.9281 1.0845 1.0633 35 1 7.4995 -1.3008 0.6984 36 1 5.8408 -0.9506 0.1551 37 1 6.6132 -2.1689 2.8450 38 1 6.8957 -3.6759 0.8553 39 1 5.1875 -3.3942 0.4422 40 1 4.5049 -4.3007 2.6469 41 1 6.2132 -4.5824 3.0600 42 1 5.4561 -5.4947 1.7320 43 1 3.8945 -1.6328 1.5653 44 1 4.1666 -2.4687 3.1132 45 1 5.2534 -0.4335 4.0214 46 1 3.5951 -0.0837 3.4783 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359434291.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:13 Heat of formation + Delta-G solvation = -56.739837 kcal Electronic energy + Delta-G solvation = -23528.564159 eV Core-core repulsion = 20417.007010 eV Total energy + Delta-G solvation = -3111.557150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.58973 -38.82609 -37.01532 -35.37265 -34.63607 -33.79734 -31.59879 -30.13241 -29.34787 -27.18109 -25.22686 -24.55398 -23.38694 -22.28955 -21.17490 -20.73228 -19.42943 -18.57246 -17.62237 -17.20161 -16.55443 -16.27106 -15.89640 -15.68753 -15.44997 -14.89108 -14.52640 -14.43325 -14.21774 -14.09119 -13.80506 -13.59238 -13.37690 -13.12452 -12.89717 -12.78149 -12.72949 -12.49615 -12.36623 -12.29427 -12.19630 -12.02055 -11.83124 -11.72240 -11.64492 -11.41159 -10.82974 -10.77226 -10.58148 -10.45803 -10.01719 -9.39930 -8.19626 -6.34041 1.28476 1.41613 1.42371 1.50108 1.87063 2.37757 2.57542 3.09771 3.67004 3.80088 3.89159 3.98906 4.08871 4.17976 4.25993 4.32151 4.45967 4.51191 4.56851 4.61957 4.67778 4.76726 4.77737 4.79412 4.86658 4.94626 5.01367 5.02086 5.05007 5.11609 5.19658 5.21856 5.31027 5.36036 5.40493 5.43385 5.50018 5.57725 5.65586 5.66403 5.74209 5.80647 5.98954 6.10156 6.61168 6.85607 7.34078 7.49513 8.85238 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016094 B = 0.005935 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.328458 B = 4716.577209 C = 5508.835975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.175 4.175 3 C 0.140 3.860 4 N -0.598 5.598 5 C 0.248 3.752 6 C -0.549 4.549 7 H 0.047 0.953 8 C 0.026 3.974 9 N -0.917 5.917 10 Si 0.952 3.048 11 H -0.274 1.274 12 H -0.279 1.279 13 H -0.272 1.272 14 C 0.525 3.475 15 O -0.583 6.583 16 C -0.105 4.105 17 C -0.092 4.092 18 C -0.128 4.128 19 C -0.078 4.078 20 C -0.115 4.115 21 C -0.150 4.150 22 C -0.106 4.106 23 C -0.107 4.107 24 H 0.102 0.898 25 H 0.119 0.881 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.015 0.985 30 H 0.046 0.954 31 H 0.268 0.732 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.102 -11.482 -2.945 12.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C 0.017 3.983 4 N -0.328 5.328 5 C 0.127 3.873 6 C -0.588 4.588 7 H 0.065 0.935 8 C -0.175 4.175 9 N -0.556 5.556 10 Si 0.778 3.222 11 H -0.200 1.200 12 H -0.204 1.204 13 H -0.197 1.197 14 C 0.316 3.684 15 O -0.465 6.465 16 C -0.126 4.126 17 C -0.130 4.130 18 C -0.165 4.165 19 C -0.097 4.097 20 C -0.152 4.152 21 C -0.207 4.207 22 C -0.144 4.144 23 C -0.145 4.145 24 H 0.120 0.880 25 H 0.137 0.863 26 H 0.117 0.883 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.033 0.967 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.200 -11.613 -3.309 12.785 hybrid contribution -0.105 1.438 0.126 1.447 sum 4.095 -10.175 -3.184 11.421 Atomic orbital electron populations 1.24003 0.94988 1.02983 0.98633 1.23161 0.96681 0.97888 1.01692 1.20458 0.92027 0.95895 0.89887 1.48225 1.13003 1.57354 1.14190 1.19265 0.95095 0.92295 0.80634 1.21655 1.36829 0.97696 1.02603 0.93507 1.25581 0.94818 1.02107 0.94986 1.69988 1.40145 1.38346 1.07074 0.85696 0.78912 0.80172 0.77452 1.19985 1.20415 1.19702 1.20802 0.81874 0.75521 0.90234 1.90441 1.74964 1.51745 1.29376 1.21272 0.95552 1.01154 0.94639 1.21303 0.93636 0.97872 1.00184 1.21885 1.01406 0.93477 0.99756 1.21133 0.95843 0.94415 0.98292 1.21508 1.01381 0.94174 0.98184 1.21799 1.01504 0.98051 0.99334 1.21578 0.97448 0.96133 0.99212 1.21572 1.01421 0.93882 0.97599 0.87992 0.86324 0.88338 0.90527 0.91057 0.96723 0.93610 0.92265 0.89945 0.90071 0.93385 0.91787 0.90634 0.90435 0.91401 0.93568 0.92971 0.92026 0.92196 0.94541 0.90549 0.89718 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.64 14.32 67.78 0.97 -3.67 16 2 C -0.18 -5.79 9.83 25.65 0.25 -5.54 16 3 C 0.14 5.39 5.84 85.63 0.50 5.89 16 4 N -0.60 -25.81 2.46 -830.48 -2.04 -27.86 16 5 C 0.25 11.96 4.71 85.63 0.40 12.37 16 6 C -0.55 -28.96 8.79 25.60 0.23 -28.73 16 7 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 8 C 0.03 1.36 5.46 84.66 0.46 1.82 16 9 N -0.92 -50.21 13.29 21.45 0.28 -49.93 16 10 Si 0.95 41.95 29.54 68.60 2.03 43.98 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 14 C 0.53 22.07 5.46 87.66 0.48 22.55 16 15 O -0.58 -25.76 12.95 -3.04 -0.04 -25.79 16 16 C -0.11 -3.92 2.18 -11.54 -0.03 -3.95 16 17 C -0.09 -2.95 5.17 30.59 0.16 -2.79 16 18 C -0.13 -3.81 4.91 30.60 0.15 -3.66 16 19 C -0.08 -2.01 2.19 -10.79 -0.02 -2.03 16 20 C -0.11 -2.57 5.40 30.60 0.17 -2.40 16 21 C -0.15 -2.79 9.67 71.99 0.70 -2.10 16 22 C -0.11 -3.09 4.74 30.60 0.15 -2.95 16 23 C -0.11 -3.53 5.14 30.59 0.16 -3.38 16 24 H 0.10 2.71 7.84 -2.91 -0.02 2.69 16 25 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 26 H 0.10 3.33 8.06 -2.91 -0.02 3.31 16 27 H 0.08 2.93 7.70 -2.39 -0.02 2.91 16 28 H 0.07 2.80 7.43 -2.39 -0.02 2.78 16 29 H 0.01 0.76 8.03 -2.39 -0.02 0.74 16 30 H 0.05 2.25 4.41 -2.39 -0.01 2.24 16 31 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 32 H 0.08 3.48 7.13 -2.39 -0.02 3.46 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.08 2.73 5.17 -2.39 -0.01 2.72 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.05 1.02 6.57 -2.39 -0.02 1.00 16 41 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.04 1.23 7.22 -2.39 -0.02 1.21 16 44 H 0.08 1.95 6.57 -2.38 -0.02 1.93 16 45 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.06 2.18 5.60 -2.38 -0.01 2.16 16 Total: -1.00 -57.96 352.55 5.87 -52.09 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.93 Total: 26.08 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 4.72 Total: -18.57 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -1.76 Total: -77.78 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.04 Total: -25.79 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -57.96 5.87 -52.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359434291.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.654 kcal (2) G-P(sol) polarization free energy of solvation -57.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds