Wall clock time and date at job start Tue Mar 31 2020 01:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.52997 * 109.46991 * 239.99657 * 2 1 3 5 5 C 1.50696 * 109.47055 * 60.00330 * 4 2 1 6 6 H 1.08000 * 120.00290 * 0.02562 * 5 4 2 7 7 C 1.37887 * 120.00079 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99907 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99654 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47022 * 89.99986 * 9 7 5 11 11 H 1.48502 * 109.46769 * 209.99494 * 9 7 5 12 12 H 1.48495 * 109.47280 * 329.99669 * 9 7 5 13 13 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 14 14 N 1.46496 * 109.46995 * 299.99666 * 13 2 1 15 15 C 1.34775 * 119.99642 * 180.02562 * 14 13 2 16 16 O 1.21279 * 120.00300 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99773 * 180.02562 * 15 14 13 18 18 C 1.55929 * 115.92240 * 297.93548 * 17 15 14 19 19 C 1.54583 * 104.64469 * 199.96823 * 18 17 15 20 20 C 1.55927 * 104.64205 * 0.02562 * 19 18 17 21 21 C 1.55926 * 105.23143 * 289.52631 * 20 19 18 22 22 C 1.55929 * 115.92301 * 62.06324 * 17 15 14 23 23 C 1.56949 * 100.65539 * 33.77836 * 20 19 18 24 24 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 25 25 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 26 26 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 29 29 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 30 30 H 1.09001 * 109.47289 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.47261 * 300.00382 * 4 2 1 32 32 H 0.96999 * 119.99682 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46801 * 59.99811 * 13 2 1 34 34 H 1.09001 * 109.46998 * 179.97438 * 13 2 1 35 35 H 0.96998 * 120.00192 * 359.97438 * 14 13 2 36 36 H 1.09000 * 110.39899 * 318.75931 * 18 17 15 37 37 H 1.08999 * 110.40427 * 81.17666 * 18 17 15 38 38 H 1.08995 * 110.40331 * 241.20822 * 19 18 17 39 39 H 1.09003 * 110.49667 * 118.83639 * 19 18 17 40 40 H 1.09006 * 115.92158 * 160.03661 * 20 19 18 41 41 H 1.08999 * 110.40973 * 189.26034 * 21 20 19 42 42 H 1.09000 * 110.40455 * 311.56907 * 21 20 19 43 43 H 1.09000 * 110.39690 * 278.82128 * 22 17 15 44 44 H 1.08994 * 110.40316 * 41.23687 * 22 17 15 45 45 H 1.08996 * 112.02589 * 189.69908 * 23 20 19 46 46 H 1.09000 * 112.02748 * 63.17024 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9172 0.8674 -2.3806 7 6 1.8712 -0.4818 -3.7320 8 7 1.4332 0.1385 -4.8058 9 14 2.9450 -2.0006 -3.9032 10 1 2.0863 -3.2113 -3.9492 11 1 3.7373 -1.9079 -5.1558 12 1 3.8650 -2.0900 -2.7410 13 6 2.0399 -0.7213 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4908 3.6695 16 8 2.5747 -1.4770 3.7808 17 6 1.3747 0.2193 4.8999 18 6 1.8484 1.6943 5.0771 19 6 1.6463 1.9918 6.5805 20 6 1.0701 0.6683 7.1702 21 6 -0.3783 0.5633 6.6025 22 6 -0.1739 0.2623 5.0772 23 6 1.8086 -0.3920 6.2793 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1300 -0.7217 -1.2490 31 1 1.6765 -1.7490 -1.2492 32 1 1.6676 -0.1929 -5.6868 33 1 1.6764 -1.7489 1.2493 34 1 3.1299 -0.7217 1.2492 35 1 0.9943 0.7583 2.3564 36 1 2.9005 1.7903 4.8088 37 1 1.2383 2.3647 4.4717 38 1 0.9368 2.8084 6.7143 39 1 2.5981 2.2351 7.0528 40 1 1.1693 0.5443 8.2487 41 1 -0.9195 -0.2480 7.0893 42 1 -0.9082 1.5064 6.7361 43 1 -0.6036 1.0604 4.4718 44 1 -0.6139 -0.6982 4.8090 45 1 1.4105 -1.3963 6.4245 46 1 2.8892 -0.3615 6.4185 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359753760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:24 Heat of formation + Delta-G solvation = -61.549570 kcal Electronic energy + Delta-G solvation = -22716.659650 eV Core-core repulsion = 19604.893935 eV Total energy + Delta-G solvation = -3111.765715 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.83401 -38.79858 -37.06121 -33.63478 -32.12062 -30.67824 -30.02022 -27.86507 -27.79267 -26.56590 -26.16126 -22.89945 -22.50018 -21.41900 -19.81515 -19.20862 -18.05145 -17.12412 -16.74108 -15.72334 -15.68375 -15.23272 -14.72991 -14.58728 -14.01566 -13.59723 -13.54384 -12.95063 -12.84252 -12.73418 -12.38982 -12.34318 -12.25390 -12.00848 -11.53695 -11.27231 -11.25465 -11.21814 -11.11949 -11.06662 -11.00825 -10.62611 -10.60419 -10.48282 -10.22548 -9.97502 -9.82324 -9.72918 -9.38506 -8.99743 -8.78091 -8.53879 -6.04749 -4.01959 2.72989 3.31387 3.37852 3.39712 3.43694 4.09243 4.21561 4.28999 4.45436 4.81875 4.87497 4.90561 5.09495 5.14373 5.16807 5.18808 5.27986 5.38614 5.46662 5.52834 5.59241 5.63186 5.68219 5.70131 5.77777 5.82907 5.95794 5.98696 6.04224 6.04885 6.10591 6.11979 6.20186 6.31280 6.49138 6.58809 6.70592 6.90350 7.00738 7.04428 7.19931 7.36351 7.70048 7.79973 8.40108 8.52599 8.99280 9.58065 11.07993 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.036110 B = 0.003601 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.220259 B = 7774.779664 C = 8024.367868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.717 5.717 15 C 0.537 3.463 16 O -0.544 6.544 17 C -0.104 4.104 18 C -0.108 4.108 19 C -0.118 4.118 20 C -0.108 4.108 21 C -0.117 4.117 22 C -0.108 4.108 23 C -0.095 4.095 24 H 0.031 0.969 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.018 0.982 31 H 0.013 0.987 32 H 0.262 0.738 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.399 0.601 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 3.761 23.074 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.368 5.368 15 C 0.323 3.677 16 O -0.422 6.422 17 C -0.107 4.107 18 C -0.146 4.146 19 C -0.155 4.155 20 C -0.126 4.126 21 C -0.155 4.155 22 C -0.146 4.146 23 C -0.133 4.133 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.234 0.766 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.126 3.055 22.921 23.221 hybrid contribution 0.302 -0.458 -0.462 0.717 sum -1.824 2.597 22.459 22.682 Atomic orbital electron populations 1.21773 0.94812 1.01249 1.00745 1.20686 0.95811 0.95905 0.93924 1.21769 1.00441 0.95601 1.00742 1.19589 0.96274 0.95485 0.92620 1.21080 1.31835 1.13342 0.88620 0.90401 1.25000 0.95697 0.96748 0.95981 1.69901 1.45960 1.40566 0.97883 0.86858 0.81344 0.83922 0.77654 1.20368 1.21496 1.18995 1.21643 0.98872 0.96035 0.83268 1.46147 1.53086 1.31902 1.05659 1.19742 0.80069 0.84098 0.83822 1.90685 1.38164 1.26416 1.86889 1.22959 0.97279 0.96628 0.93859 1.22558 1.01597 0.93472 0.96925 1.22589 1.00933 0.97117 0.94874 1.23576 0.95186 0.95239 0.98572 1.22969 0.96303 1.01515 0.94700 1.22941 0.92787 1.02109 0.96719 1.23352 1.00323 0.98122 0.91474 0.95033 0.90879 0.93415 0.93412 0.90872 0.95037 0.96383 0.96833 0.92795 0.91883 0.91877 0.76552 0.91342 0.91091 0.91463 0.91613 0.88245 0.91555 0.91469 0.91090 0.91276 0.90807 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.06 -1.15 0.54 -154.51 -0.08 -1.23 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 4 C 0.00 -0.04 3.11 -27.89 -0.09 -0.13 16 5 C -0.51 -13.65 8.20 -34.44 -0.28 -13.94 16 6 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 7 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 9 Si 0.87 21.55 27.47 -169.99 -4.67 16.88 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 13 C 0.12 2.11 4.56 -4.04 -0.02 2.10 16 14 N -0.72 -10.13 4.96 -60.29 -0.30 -10.43 16 15 C 0.54 7.92 7.20 -10.98 -0.08 7.84 16 16 O -0.54 -10.18 16.51 5.56 0.09 -10.09 16 17 C -0.10 -1.14 1.27 -150.37 -0.19 -1.33 16 18 C -0.11 -0.98 5.88 -24.33 -0.14 -1.13 16 19 C -0.12 -0.88 6.23 -24.34 -0.15 -1.04 16 20 C -0.11 -0.82 5.14 -85.35 -0.44 -1.26 16 21 C -0.12 -0.88 6.33 -23.11 -0.15 -1.03 16 22 C -0.11 -0.98 5.99 -23.11 -0.14 -1.12 16 23 C -0.09 -0.98 5.64 -22.43 -0.13 -1.10 16 24 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 25 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.42 6.62 -51.93 -0.34 1.07 16 29 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 30 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 31 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.40 4.85 6.16 -40.82 -0.25 4.60 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 38 H 0.07 0.44 7.88 -51.93 -0.41 0.03 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.44 7.88 -51.93 -0.41 0.03 16 43 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -30.76 348.48 -8.42 -39.18 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -8.18 Total: 1.05 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -1.38 Total: -15.40 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.47 Total: -36.87 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.76 -8.42 -39.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359753760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.369 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds