Wall clock time and date at job start Tue Mar 31 2020 01:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.52997 * 109.46991 * 239.99657 * 2 1 3 5 5 C 1.50696 * 109.47055 * 60.00330 * 4 2 1 6 6 H 1.08000 * 120.00290 * 0.02562 * 5 4 2 7 7 C 1.37887 * 120.00079 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99907 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99654 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47022 * 89.99986 * 9 7 5 11 11 H 1.48502 * 109.46769 * 209.99494 * 9 7 5 12 12 H 1.48495 * 109.47280 * 329.99669 * 9 7 5 13 13 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 14 14 N 1.46496 * 109.46995 * 299.99666 * 13 2 1 15 15 C 1.34775 * 119.99642 * 180.02562 * 14 13 2 16 16 O 1.21279 * 120.00300 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99773 * 180.02562 * 15 14 13 18 18 C 1.55929 * 115.92240 * 297.93548 * 17 15 14 19 19 C 1.54583 * 104.64469 * 199.96823 * 18 17 15 20 20 C 1.55927 * 104.64205 * 0.02562 * 19 18 17 21 21 C 1.55926 * 105.23143 * 289.52631 * 20 19 18 22 22 C 1.55929 * 115.92301 * 62.06324 * 17 15 14 23 23 C 1.56949 * 100.65539 * 33.77836 * 20 19 18 24 24 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 25 25 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 26 26 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 29 29 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 30 30 H 1.09001 * 109.47289 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.47261 * 300.00382 * 4 2 1 32 32 H 0.96999 * 119.99682 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46801 * 59.99811 * 13 2 1 34 34 H 1.09001 * 109.46998 * 179.97438 * 13 2 1 35 35 H 0.96998 * 120.00192 * 359.97438 * 14 13 2 36 36 H 1.09000 * 110.39899 * 318.75931 * 18 17 15 37 37 H 1.08999 * 110.40427 * 81.17666 * 18 17 15 38 38 H 1.08995 * 110.40331 * 241.20822 * 19 18 17 39 39 H 1.09003 * 110.49667 * 118.83639 * 19 18 17 40 40 H 1.09006 * 115.92158 * 160.03661 * 20 19 18 41 41 H 1.08999 * 110.40973 * 189.26034 * 21 20 19 42 42 H 1.09000 * 110.40455 * 311.56907 * 21 20 19 43 43 H 1.09000 * 110.39690 * 278.82128 * 22 17 15 44 44 H 1.08994 * 110.40316 * 41.23687 * 22 17 15 45 45 H 1.08996 * 112.02589 * 189.69908 * 23 20 19 46 46 H 1.09000 * 112.02748 * 63.17024 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9172 0.8674 -2.3806 7 6 1.8712 -0.4818 -3.7320 8 7 1.4332 0.1385 -4.8058 9 14 2.9450 -2.0006 -3.9032 10 1 2.0863 -3.2113 -3.9492 11 1 3.7373 -1.9079 -5.1558 12 1 3.8650 -2.0900 -2.7410 13 6 2.0399 -0.7213 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4908 3.6695 16 8 2.5747 -1.4770 3.7808 17 6 1.3747 0.2193 4.8999 18 6 1.8484 1.6943 5.0771 19 6 1.6463 1.9918 6.5805 20 6 1.0701 0.6683 7.1702 21 6 -0.3783 0.5633 6.6025 22 6 -0.1739 0.2623 5.0772 23 6 1.8086 -0.3920 6.2793 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1300 -0.7217 -1.2490 31 1 1.6765 -1.7490 -1.2492 32 1 1.6676 -0.1929 -5.6868 33 1 1.6764 -1.7489 1.2493 34 1 3.1299 -0.7217 1.2492 35 1 0.9943 0.7583 2.3564 36 1 2.9005 1.7903 4.8088 37 1 1.2383 2.3647 4.4717 38 1 0.9368 2.8084 6.7143 39 1 2.5981 2.2351 7.0528 40 1 1.1693 0.5443 8.2487 41 1 -0.9195 -0.2480 7.0893 42 1 -0.9082 1.5064 6.7361 43 1 -0.6036 1.0604 4.4718 44 1 -0.6139 -0.6982 4.8090 45 1 1.4105 -1.3963 6.4245 46 1 2.8892 -0.3615 6.4185 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359753760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:23 Heat of formation + Delta-G solvation = -79.402002 kcal Electronic energy + Delta-G solvation = -22717.433789 eV Core-core repulsion = 19604.893935 eV Total energy + Delta-G solvation = -3112.539855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.72586 -39.94115 -38.51093 -35.22322 -34.00783 -31.29956 -30.90972 -29.64145 -28.58753 -28.00494 -27.50545 -24.62021 -23.12005 -22.71287 -20.71606 -20.15702 -19.39344 -18.91208 -17.97411 -17.00970 -16.61056 -16.22842 -15.90641 -15.87022 -15.54767 -15.21598 -15.00821 -14.26546 -14.19622 -13.87648 -13.77734 -13.50087 -13.20516 -12.95240 -12.85531 -12.67268 -12.61940 -12.31990 -12.18457 -12.15182 -11.99612 -11.90773 -11.78802 -11.76750 -11.53588 -11.35403 -11.17117 -10.93780 -10.87416 -10.71831 -10.71347 -10.07254 -8.23560 -6.23542 1.34544 1.37482 1.47396 1.58772 2.22457 2.37918 3.11865 3.33377 3.50424 3.57719 3.87234 4.01964 4.03485 4.14351 4.20653 4.25840 4.39725 4.50041 4.57306 4.58629 4.62259 4.67503 4.68615 4.77590 4.83993 4.92995 5.00394 5.03326 5.07744 5.09559 5.15529 5.19268 5.25866 5.27902 5.34979 5.36185 5.38999 5.40654 5.45204 5.47289 5.54527 5.67611 5.75191 6.36809 6.58072 6.83186 7.24973 7.39258 8.91994 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.036110 B = 0.003601 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.220259 B = 7774.779664 C = 8024.367868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.058 4.058 3 C -0.123 4.123 4 C -0.003 4.003 5 C -0.502 4.502 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.933 3.067 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.254 1.254 13 C 0.137 3.863 14 N -0.706 5.706 15 C 0.535 3.465 16 O -0.589 6.589 17 C -0.109 4.109 18 C -0.106 4.106 19 C -0.114 4.114 20 C -0.097 4.097 21 C -0.113 4.113 22 C -0.107 4.107 23 C -0.103 4.103 24 H 0.068 0.932 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.013 0.987 31 H 0.012 0.988 32 H 0.263 0.737 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.412 0.588 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.117 0.883 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.185 4.502 25.718 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.058 4.058 3 C -0.180 4.180 4 C -0.041 4.041 5 C -0.540 4.540 6 H 0.072 0.928 7 C -0.189 4.189 8 N -0.592 5.592 9 Si 0.758 3.242 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.178 1.178 13 C 0.013 3.987 14 N -0.358 5.358 15 C 0.323 3.677 16 O -0.470 6.470 17 C -0.112 4.112 18 C -0.144 4.144 19 C -0.151 4.151 20 C -0.115 4.115 21 C -0.150 4.150 22 C -0.144 4.144 23 C -0.141 4.141 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.032 0.968 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.249 0.751 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.135 0.865 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.696 3.818 25.586 26.010 hybrid contribution 0.458 -0.665 -1.264 1.499 sum -2.239 3.154 24.322 24.628 Atomic orbital electron populations 1.21699 0.93813 1.01238 1.01301 1.20552 0.96556 0.96145 0.92554 1.21696 1.00201 0.94835 1.01304 1.19563 0.95878 0.95456 0.93215 1.21361 1.30285 1.12321 0.90025 0.92832 1.25813 0.97401 0.99826 0.95906 1.70035 1.48103 1.42609 0.98432 0.85915 0.79900 0.80488 0.77884 1.19712 1.21373 1.17756 1.21288 0.98152 0.95584 0.83688 1.45977 1.52976 1.32002 1.04800 1.20449 0.79030 0.83515 0.84753 1.90662 1.40230 1.28565 1.87526 1.22941 0.98850 0.97535 0.91907 1.22600 1.01070 0.92080 0.98636 1.22597 1.01714 0.97436 0.93352 1.23603 0.94776 0.94000 0.99075 1.22976 0.96257 1.02646 0.93126 1.22984 0.90869 1.02107 0.98482 1.23400 0.99877 0.98537 0.92255 0.91301 0.93445 0.93729 0.93772 0.93430 0.91301 0.96843 0.96981 0.92832 0.92869 0.92945 0.75069 0.92574 0.89589 0.89597 0.91252 0.86535 0.91153 0.89609 0.89595 0.92488 0.92075 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 2 C -0.06 -2.06 0.54 -52.18 -0.03 -2.08 16 3 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 4 C 0.00 -0.15 3.11 29.85 0.09 -0.05 16 5 C -0.50 -27.28 8.20 25.60 0.21 -27.07 16 6 H 0.05 3.12 5.92 -2.91 -0.02 3.10 16 7 C 0.01 0.40 5.47 84.66 0.46 0.86 16 8 N -0.95 -58.59 13.96 21.45 0.30 -58.29 16 9 Si 0.93 44.68 27.47 68.60 1.88 46.57 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 12 H -0.25 -11.55 6.54 99.48 0.65 -10.90 16 13 C 0.14 4.50 4.56 86.38 0.39 4.90 16 14 N -0.71 -18.68 4.96 -463.06 -2.30 -20.97 16 15 C 0.53 15.23 7.20 87.66 0.63 15.86 16 16 O -0.59 -22.16 16.51 -3.03 -0.05 -22.21 16 17 C -0.11 -2.18 1.27 -49.50 -0.06 -2.24 16 18 C -0.11 -1.64 5.88 32.15 0.19 -1.45 16 19 C -0.11 -1.30 6.23 32.15 0.20 -1.10 16 20 C -0.10 -1.18 5.14 -7.38 -0.04 -1.22 16 21 C -0.11 -1.28 6.33 32.94 0.21 -1.07 16 22 C -0.11 -1.64 5.99 32.94 0.20 -1.44 16 23 C -0.10 -2.00 5.64 33.38 0.19 -1.81 16 24 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 25 H 0.05 1.82 6.62 -2.39 -0.02 1.81 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.83 6.62 -2.39 -0.02 1.82 16 29 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 30 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 31 H 0.01 0.55 7.57 -2.38 -0.02 0.53 16 32 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.41 8.71 6.16 -92.71 -0.57 8.14 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 37 H 0.09 1.07 7.87 -2.39 -0.02 1.05 16 38 H 0.09 0.72 7.88 -2.39 -0.02 0.70 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.09 0.72 7.88 -2.39 -0.02 0.70 16 43 H 0.09 1.07 7.87 -2.39 -0.02 1.05 16 44 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -68.40 348.48 3.96 -64.44 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.32 Total: 15.44 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 3.80 Total: -24.97 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -2.00 Total: -79.27 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.05 Total: -22.21 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.57 kcal Total: -68.40 3.96 -64.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359753760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.960 kcal (2) G-P(sol) polarization free energy of solvation -68.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds