Wall clock time and date at job start Tue Mar 31 2020 01:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.46943 * 240.00224 * 2 1 3 5 5 C 1.50699 * 109.47240 * 60.00091 * 4 2 1 6 6 H 1.08003 * 119.99962 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00243 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99980 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46755 * 90.00221 * 9 7 5 11 11 H 1.48494 * 109.47308 * 209.99919 * 9 7 5 12 12 H 1.48496 * 109.47178 * 330.00271 * 9 7 5 13 13 C 1.52999 * 109.47317 * 120.00367 * 2 1 3 14 14 N 1.46506 * 109.46684 * 300.00056 * 13 2 1 15 15 C 1.34777 * 119.99873 * 180.02562 * 14 13 2 16 16 O 1.21284 * 119.99754 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00137 * 179.97438 * 15 14 13 18 18 C 1.53002 * 109.46999 * 59.99467 * 17 15 14 19 19 C 1.53002 * 117.50090 * 248.74658 * 18 17 15 20 20 C 1.53003 * 117.49922 * 180.08765 * 18 17 15 21 21 C 1.53002 * 109.47300 * 179.97438 * 17 15 14 22 22 C 1.52996 * 117.49714 * 128.74793 * 21 17 15 23 23 C 1.52994 * 117.49912 * 60.08515 * 21 17 15 24 24 H 1.09002 * 109.47153 * 299.99992 * 1 2 3 25 25 H 1.09001 * 109.46832 * 59.99801 * 1 2 3 26 26 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47375 * 299.99867 * 3 2 1 29 29 H 1.09002 * 109.47497 * 60.00225 * 3 2 1 30 30 H 1.09000 * 109.46866 * 180.02562 * 4 2 1 31 31 H 1.08996 * 109.47261 * 299.99767 * 4 2 1 32 32 H 0.96992 * 120.00032 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47486 * 179.97438 * 13 2 1 34 34 H 1.09001 * 109.47362 * 59.99268 * 13 2 1 35 35 H 0.96995 * 120.00050 * 359.72237 * 14 13 2 36 36 H 1.09004 * 109.47043 * 299.99732 * 17 15 14 37 37 H 1.09002 * 115.54829 * 34.42434 * 18 17 15 38 38 H 1.09000 * 117.49453 * 0.02562 * 19 18 17 39 39 H 1.09002 * 117.49659 * 145.02001 * 19 18 17 40 40 H 1.08997 * 117.49859 * 214.98634 * 20 18 17 41 41 H 1.09006 * 117.49765 * 359.97438 * 20 18 17 42 42 H 1.09003 * 115.54690 * 274.41573 * 21 17 15 43 43 H 1.08999 * 117.50230 * 359.97438 * 22 21 17 44 44 H 1.08997 * 117.49563 * 145.02264 * 22 21 17 45 45 H 1.08999 * 117.49896 * 214.97966 * 23 21 17 46 46 H 1.08999 * 117.49612 * 359.97438 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9171 0.8676 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5509 -3.8527 9 14 1.2479 0.3987 -5.2572 10 1 2.2254 1.4411 -5.6612 11 1 1.0837 -0.5804 -6.3615 12 1 -0.0607 1.0353 -4.9614 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5750 -1.4770 3.7807 17 6 1.3758 0.2198 4.8999 18 6 -0.1542 0.2199 4.9004 19 6 -0.8607 1.5613 4.6940 20 6 -0.8603 0.9006 6.0748 21 6 1.8857 -0.5016 6.1492 22 6 2.5854 0.3426 7.2162 23 6 3.4006 -0.6072 6.3350 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 -0.7216 -1.2491 31 1 1.6767 -1.7489 -1.2494 32 1 2.8615 -1.8822 -4.7337 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7490 1.2492 35 1 0.9973 0.7603 2.3564 36 1 1.7392 1.2475 4.8996 37 1 -0.6245 -0.6672 4.4762 38 1 -0.2354 2.4436 4.5575 39 1 -1.7959 1.5566 4.1342 40 1 -1.7952 0.4615 6.4229 41 1 -0.2347 1.3479 6.8473 42 1 1.2772 -1.3395 6.4894 43 1 2.6829 1.4118 7.0281 44 1 2.4377 0.0598 8.2584 45 1 3.7889 -1.5144 6.7979 46 1 4.0340 -0.1632 5.5671 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359757163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:58 Heat of formation + Delta-G solvation = -14.083411 kcal Electronic energy + Delta-G solvation = -22416.252894 eV Core-core repulsion = 19306.545466 eV Total energy + Delta-G solvation = -3109.707428 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.16197 -38.00964 -36.89650 -36.23289 -33.49335 -32.07412 -29.63370 -27.07514 -26.50638 -25.95326 -23.10229 -22.64268 -22.37160 -21.55549 -21.03517 -19.71625 -18.28765 -16.98393 -16.35037 -16.07278 -15.51312 -15.17823 -14.71426 -14.52641 -14.14378 -13.98113 -13.48594 -13.28332 -12.99627 -12.72484 -12.19656 -12.06243 -11.88238 -11.73166 -11.64482 -11.51964 -11.12564 -11.01003 -10.85751 -10.73299 -10.63404 -10.52153 -10.41192 -10.37958 -10.24319 -9.96031 -9.86806 -9.51729 -9.10341 -8.91188 -8.64297 -8.35829 -5.99850 -4.01198 2.86667 3.30678 3.34528 3.37900 3.39874 3.52767 3.93356 4.40868 4.45338 4.52748 4.67370 4.83119 4.86474 4.94463 5.14556 5.24510 5.28764 5.35625 5.43949 5.52924 5.53661 5.63659 5.65744 5.70440 5.76473 5.87974 5.91090 5.96573 6.04839 6.18217 6.19564 6.24465 6.31486 6.40847 6.60281 6.63400 6.81004 7.07034 7.07946 7.14087 7.64419 7.76862 7.83392 7.99045 8.40590 8.52611 9.03697 9.61941 11.11631 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.003587 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.897709 B = 7804.500765 C = 8396.409696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.128 3.872 14 N -0.720 5.720 15 C 0.512 3.488 16 O -0.537 6.537 17 C -0.046 4.046 18 C -0.145 4.145 19 C -0.179 4.179 20 C -0.169 4.169 21 C -0.125 4.125 22 C -0.186 4.186 23 C -0.156 4.156 24 H 0.029 0.971 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.398 0.602 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.113 6.666 20.136 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.005 3.995 14 N -0.371 5.371 15 C 0.297 3.703 16 O -0.414 6.414 17 C -0.068 4.068 18 C -0.164 4.164 19 C -0.216 4.216 20 C -0.206 4.206 21 C -0.144 4.144 22 C -0.223 4.223 23 C -0.193 4.193 24 H 0.048 0.952 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.233 0.767 36 H 0.111 0.889 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.124 0.876 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.525 5.825 20.059 21.372 hybrid contribution -0.559 0.745 -1.073 1.421 sum -5.085 6.570 18.985 20.724 Atomic orbital electron populations 1.21751 0.95290 1.01110 1.00213 1.20894 0.95467 0.95797 0.95103 1.21758 1.00493 0.95965 1.00182 1.19087 0.96318 0.95216 0.89511 1.21186 1.31163 1.12035 0.90534 0.92266 1.25016 0.95336 0.95071 0.99080 1.69967 1.37004 1.23006 1.23429 0.86652 0.79185 0.79413 0.83082 1.20778 1.21342 1.19943 1.21602 0.98787 0.96006 0.83083 1.46208 1.53282 1.31856 1.05794 1.20407 0.80511 0.84857 0.84478 1.90694 1.37813 1.26131 1.86774 1.20510 0.93926 0.99872 0.92451 1.22089 0.92389 0.97477 1.04422 1.23109 1.02764 0.95741 0.99990 1.22920 1.02165 1.03855 0.91673 1.21795 0.95889 1.01283 0.95407 1.23098 1.05579 0.97412 0.96235 1.22791 0.93697 1.00959 1.01822 0.95174 0.91506 0.93437 0.93417 0.91461 0.95288 0.96398 0.96376 0.93043 0.91983 0.91948 0.76689 0.88921 0.87347 0.88603 0.88427 0.88781 0.88497 0.87567 0.89135 0.88918 0.88885 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 3 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.55 7.65 -34.44 -0.26 -13.82 16 6 H 0.06 1.51 5.68 -52.48 -0.30 1.21 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.13 2.28 4.56 -4.04 -0.02 2.26 16 14 N -0.72 -10.44 4.86 -60.29 -0.29 -10.74 16 15 C 0.51 7.56 7.01 -10.99 -0.08 7.48 16 16 O -0.54 -9.95 15.09 5.55 0.08 -9.87 16 17 C -0.05 -0.50 2.50 -91.77 -0.23 -0.73 16 18 C -0.15 -1.36 4.94 -90.62 -0.45 -1.81 16 19 C -0.18 -1.41 10.18 -26.69 -0.27 -1.68 16 20 C -0.17 -1.29 9.88 -26.69 -0.26 -1.55 16 21 C -0.13 -1.34 4.38 -90.62 -0.40 -1.74 16 22 C -0.19 -1.64 10.18 -26.69 -0.27 -1.91 16 23 C -0.16 -1.75 8.98 -26.69 -0.24 -1.99 16 24 H 0.03 0.43 6.87 -51.93 -0.36 0.07 16 25 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 29 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.40 4.99 6.07 -40.82 -0.25 4.74 16 36 H 0.09 0.90 7.66 -51.93 -0.40 0.50 16 37 H 0.11 1.14 8.11 -51.93 -0.42 0.72 16 38 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.11 1.17 8.11 -51.93 -0.42 0.74 16 43 H 0.09 0.72 8.05 -51.93 -0.42 0.31 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.09 1.15 8.10 -51.93 -0.42 0.73 16 LS Contribution 365.14 15.07 5.50 5.50 Total: -1.00 -30.16 365.14 -9.39 -39.55 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -8.23 Total: 3.66 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -2.17 Total: -18.53 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.44 Total: -36.47 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.08 Total: -9.87 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.16 -9.39 -39.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359757163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.467 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds