Wall clock time and date at job start Tue Mar 31 2020 01:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.46943 * 240.00224 * 2 1 3 5 5 C 1.50699 * 109.47240 * 60.00091 * 4 2 1 6 6 H 1.08003 * 119.99962 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00243 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99980 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46755 * 90.00221 * 9 7 5 11 11 H 1.48494 * 109.47308 * 209.99919 * 9 7 5 12 12 H 1.48496 * 109.47178 * 330.00271 * 9 7 5 13 13 C 1.52999 * 109.47317 * 120.00367 * 2 1 3 14 14 N 1.46506 * 109.46684 * 300.00056 * 13 2 1 15 15 C 1.34777 * 119.99873 * 180.02562 * 14 13 2 16 16 O 1.21284 * 119.99754 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00137 * 179.97438 * 15 14 13 18 18 C 1.53002 * 109.46999 * 59.99467 * 17 15 14 19 19 C 1.53002 * 117.50090 * 248.74658 * 18 17 15 20 20 C 1.53003 * 117.49922 * 180.08765 * 18 17 15 21 21 C 1.53002 * 109.47300 * 179.97438 * 17 15 14 22 22 C 1.52996 * 117.49714 * 128.74793 * 21 17 15 23 23 C 1.52994 * 117.49912 * 60.08515 * 21 17 15 24 24 H 1.09002 * 109.47153 * 299.99992 * 1 2 3 25 25 H 1.09001 * 109.46832 * 59.99801 * 1 2 3 26 26 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47375 * 299.99867 * 3 2 1 29 29 H 1.09002 * 109.47497 * 60.00225 * 3 2 1 30 30 H 1.09000 * 109.46866 * 180.02562 * 4 2 1 31 31 H 1.08996 * 109.47261 * 299.99767 * 4 2 1 32 32 H 0.96992 * 120.00032 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47486 * 179.97438 * 13 2 1 34 34 H 1.09001 * 109.47362 * 59.99268 * 13 2 1 35 35 H 0.96995 * 120.00050 * 359.72237 * 14 13 2 36 36 H 1.09004 * 109.47043 * 299.99732 * 17 15 14 37 37 H 1.09002 * 115.54829 * 34.42434 * 18 17 15 38 38 H 1.09000 * 117.49453 * 0.02562 * 19 18 17 39 39 H 1.09002 * 117.49659 * 145.02001 * 19 18 17 40 40 H 1.08997 * 117.49859 * 214.98634 * 20 18 17 41 41 H 1.09006 * 117.49765 * 359.97438 * 20 18 17 42 42 H 1.09003 * 115.54690 * 274.41573 * 21 17 15 43 43 H 1.08999 * 117.50230 * 359.97438 * 22 21 17 44 44 H 1.08997 * 117.49563 * 145.02264 * 22 21 17 45 45 H 1.08999 * 117.49896 * 214.97966 * 23 21 17 46 46 H 1.08999 * 117.49612 * 359.97438 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9171 0.8676 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5509 -3.8527 9 14 1.2479 0.3987 -5.2572 10 1 2.2254 1.4411 -5.6612 11 1 1.0837 -0.5804 -6.3615 12 1 -0.0607 1.0353 -4.9614 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5750 -1.4770 3.7807 17 6 1.3758 0.2198 4.8999 18 6 -0.1542 0.2199 4.9004 19 6 -0.8607 1.5613 4.6940 20 6 -0.8603 0.9006 6.0748 21 6 1.8857 -0.5016 6.1492 22 6 2.5854 0.3426 7.2162 23 6 3.4006 -0.6072 6.3350 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 -0.7216 -1.2491 31 1 1.6767 -1.7489 -1.2494 32 1 2.8615 -1.8822 -4.7337 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7490 1.2492 35 1 0.9973 0.7603 2.3564 36 1 1.7392 1.2475 4.8996 37 1 -0.6245 -0.6672 4.4762 38 1 -0.2354 2.4436 4.5575 39 1 -1.7959 1.5566 4.1342 40 1 -1.7952 0.4615 6.4229 41 1 -0.2347 1.3479 6.8473 42 1 1.2772 -1.3395 6.4894 43 1 2.6829 1.4118 7.0281 44 1 2.4377 0.0598 8.2584 45 1 3.7889 -1.5144 6.7979 46 1 4.0340 -0.1632 5.5671 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359757163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:57 Heat of formation + Delta-G solvation = -30.202602 kcal Electronic energy + Delta-G solvation = -22416.951874 eV Core-core repulsion = 19306.545466 eV Total energy + Delta-G solvation = -3110.406409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.27726 -39.19318 -38.15217 -37.03108 -35.16085 -33.88351 -30.62136 -29.01177 -27.96237 -27.38553 -24.91267 -23.42071 -23.07093 -22.27256 -22.15390 -20.78321 -19.77544 -18.38203 -18.12725 -17.03560 -16.71717 -16.42199 -16.22284 -15.79277 -15.26972 -14.97659 -14.89819 -14.48769 -14.44267 -14.16825 -13.93976 -13.72093 -12.88112 -12.72663 -12.67344 -12.57730 -12.44871 -12.34119 -12.31111 -12.24480 -12.22184 -11.97787 -11.54656 -11.53531 -11.25982 -11.17026 -11.05697 -10.87838 -10.69344 -10.51539 -10.42638 -9.99908 -8.14021 -6.22137 1.42656 1.43189 1.53597 1.69585 2.21370 2.45025 2.88426 3.05037 3.20405 3.63495 3.75394 3.88221 3.99350 4.08177 4.10513 4.16194 4.22853 4.23892 4.35567 4.42024 4.50813 4.69621 4.72285 4.78166 4.83854 4.89876 4.91594 4.96685 5.07425 5.11241 5.12293 5.13847 5.24413 5.29612 5.36335 5.38577 5.41678 5.49311 5.49659 5.53778 5.59077 5.80104 5.89779 6.30199 6.65784 6.93255 7.34378 7.45840 8.98623 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.003587 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.897709 B = 7804.500765 C = 8396.409696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.258 1.258 13 C 0.142 3.858 14 N -0.708 5.708 15 C 0.509 3.491 16 O -0.581 6.581 17 C -0.033 4.033 18 C -0.162 4.162 19 C -0.171 4.171 20 C -0.157 4.157 21 C -0.137 4.137 22 C -0.153 4.153 23 C -0.180 4.180 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.034 0.966 27 H 0.036 0.964 28 H 0.056 0.944 29 H 0.070 0.930 30 H -0.016 1.016 31 H -0.016 1.016 32 H 0.259 0.741 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.412 0.588 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.110 0.890 45 H 0.087 0.913 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.089 9.724 21.774 24.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.182 1.182 13 C 0.017 3.983 14 N -0.360 5.360 15 C 0.296 3.704 16 O -0.460 6.460 17 C -0.054 4.054 18 C -0.181 4.181 19 C -0.208 4.208 20 C -0.193 4.193 21 C -0.155 4.155 22 C -0.190 4.190 23 C -0.217 4.217 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.002 0.998 31 H 0.002 0.998 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.250 0.750 36 H 0.131 0.869 37 H 0.111 0.889 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.118 0.882 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.106 0.894 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.532 8.924 21.716 24.370 hybrid contribution 0.092 -0.275 -1.529 1.556 sum -6.440 8.649 20.187 22.887 Atomic orbital electron populations 1.21676 0.93539 1.00850 1.01656 1.20698 0.96735 0.96300 0.92718 1.21690 0.99847 0.94610 1.01693 1.18969 0.94170 0.94143 0.92465 1.21597 1.30427 1.12070 0.91029 0.90819 1.25967 0.95670 0.95849 1.02781 1.70129 1.38862 1.25008 1.24091 0.85529 0.79235 0.78095 0.78697 1.20122 1.21629 1.18219 1.21171 0.97537 0.95277 0.84275 1.45994 1.53277 1.31980 1.04762 1.21231 0.79415 0.84332 0.85388 1.90681 1.39716 1.28238 1.87377 1.20451 0.95019 1.00002 0.89895 1.21942 0.91123 0.98114 1.06912 1.23225 1.02700 0.94843 1.00009 1.22999 1.02070 1.02682 0.91587 1.21846 0.95185 1.02104 0.96409 1.23175 1.01868 0.97613 0.96323 1.22759 0.94035 1.02038 1.02917 0.91110 0.92534 0.94632 0.94528 0.92447 0.91151 0.99753 0.99769 0.93187 0.93937 0.94021 0.75042 0.86910 0.88923 0.87363 0.87939 0.88127 0.87492 0.88191 0.87525 0.87190 0.89407 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 2 C -0.06 -2.44 0.54 -52.18 -0.03 -2.46 16 3 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.51 -27.56 7.65 25.60 0.20 -27.37 16 6 H 0.07 3.68 5.68 -2.91 -0.02 3.67 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 8 N -0.94 -57.54 13.29 21.45 0.28 -57.25 16 9 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 C 0.14 5.18 4.56 86.38 0.39 5.57 16 14 N -0.71 -19.74 4.86 -463.05 -2.25 -21.99 16 15 C 0.51 14.75 7.01 87.66 0.61 15.36 16 16 O -0.58 -22.15 15.09 -3.04 -0.05 -22.19 16 17 C -0.03 -0.64 2.50 -11.54 -0.03 -0.67 16 18 C -0.16 -2.63 4.94 -10.79 -0.05 -2.68 16 19 C -0.17 -2.01 10.18 30.62 0.31 -1.70 16 20 C -0.16 -1.82 9.88 30.62 0.30 -1.51 16 21 C -0.14 -2.73 4.38 -10.80 -0.05 -2.78 16 22 C -0.15 -2.25 10.18 30.62 0.31 -1.94 16 23 C -0.18 -3.97 8.98 30.62 0.27 -3.70 16 24 H 0.07 1.79 6.87 -2.39 -0.02 1.77 16 25 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 26 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 2.04 6.62 -2.39 -0.02 2.03 16 29 H 0.07 1.76 6.86 -2.39 -0.02 1.74 16 30 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 31 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 32 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.41 9.06 6.07 -92.71 -0.56 8.49 16 36 H 0.11 1.78 7.66 -2.38 -0.02 1.76 16 37 H 0.09 1.82 8.11 -2.39 -0.02 1.80 16 38 H 0.11 1.04 8.05 -2.39 -0.02 1.02 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.10 2.11 8.11 -2.39 -0.02 2.09 16 43 H 0.11 1.27 8.05 -2.39 -0.02 1.25 16 44 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.07 1.89 8.10 -2.39 -0.02 1.87 16 Total: -1.00 -68.78 365.14 4.38 -64.40 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.38 Total: 19.93 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 3.99 Total: -28.49 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -1.97 Total: -79.24 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.05 Total: -22.19 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -68.78 4.38 -64.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359757163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.196 kcal (2) G-P(sol) polarization free energy of solvation -68.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds