Wall clock time and date at job start Tue Mar 31 2020 01:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00674 * 2 1 4 4 C 1.53002 * 109.47007 * 124.99875 * 3 2 1 5 5 C 1.50707 * 112.84998 * 298.08291 * 4 3 2 6 6 O 1.21277 * 119.99821 * 113.50534 * 5 4 3 7 7 N 1.34775 * 119.99672 * 293.77488 * 5 4 3 8 8 C 1.46502 * 119.99573 * 174.75909 * 7 5 4 9 9 C 1.53001 * 109.47030 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.47002 * 300.00047 * 9 8 7 11 11 C 1.53006 * 109.47183 * 60.00042 * 9 8 7 12 12 C 1.53001 * 109.47091 * 179.97438 * 9 8 7 13 13 C 1.50699 * 109.46797 * 179.97438 * 12 9 8 14 14 H 1.08001 * 120.00530 * 0.02562 * 13 12 9 15 15 C 1.37880 * 119.99903 * 180.02562 * 13 12 9 16 16 N 1.31523 * 119.99634 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00198 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46886 * 60.00176 * 17 15 13 19 19 H 1.48500 * 109.47270 * 179.97438 * 17 15 13 20 20 H 1.48490 * 109.47014 * 299.99986 * 17 15 13 21 21 C 1.53781 * 113.68935 * 69.35133 * 4 3 2 22 22 C 1.53781 * 87.08126 * 89.12647 * 21 4 3 23 23 C 1.53781 * 113.61501 * 166.88781 * 4 3 2 24 24 H 1.07993 * 120.00686 * 179.97438 * 1 2 3 25 25 H 1.08007 * 119.99615 * 359.97438 * 1 2 3 26 26 H 1.08007 * 119.99615 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46856 * 5.00465 * 3 2 1 28 28 H 1.08996 * 109.47659 * 244.99873 * 3 2 1 29 29 H 0.96994 * 120.00469 * 354.76309 * 7 5 4 30 30 H 1.09000 * 109.47149 * 300.00464 * 8 7 5 31 31 H 1.09003 * 109.46858 * 60.00377 * 8 7 5 32 32 H 1.09001 * 109.47085 * 60.00149 * 10 9 8 33 33 H 1.09000 * 109.47075 * 179.97438 * 10 9 8 34 34 H 1.09000 * 109.47434 * 299.99636 * 10 9 8 35 35 H 1.09000 * 109.46935 * 59.99820 * 11 9 8 36 36 H 1.08998 * 109.46818 * 180.02562 * 11 9 8 37 37 H 1.08994 * 109.47028 * 300.00351 * 11 9 8 38 38 H 1.09000 * 109.47194 * 300.00282 * 12 9 8 39 39 H 1.09003 * 109.46752 * 60.00157 * 12 9 8 40 40 H 0.97002 * 119.99342 * 180.02562 * 16 15 13 41 41 H 1.09007 * 113.61412 * 203.67538 * 21 4 3 42 42 H 1.09001 * 113.61439 * 334.57575 * 21 4 3 43 43 H 1.08994 * 113.61181 * 270.88568 * 22 21 4 44 44 H 1.09002 * 113.61556 * 139.97869 * 22 21 4 45 45 H 1.09002 * 113.61628 * 25.34530 * 23 4 3 46 46 H 1.08995 * 113.61806 * 156.25157 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3328 1.1817 5 6 2.3375 1.2492 2.5149 6 8 2.4888 0.2728 3.2182 7 7 1.5412 2.2570 2.9232 8 6 0.7733 2.1271 4.1641 9 6 -0.0421 3.4009 4.3949 10 6 0.9033 4.5990 4.5032 11 6 -1.0010 3.6124 3.2215 12 6 -0.8445 3.2650 5.6905 13 6 -1.6472 4.5200 5.9181 14 1 -1.5910 5.3330 5.2095 15 6 -2.4534 4.6303 7.0312 16 7 -2.5215 3.6404 7.8945 17 14 -3.4489 6.1856 7.3131 18 1 -4.3797 6.3907 6.1743 19 1 -4.2277 6.0537 8.5706 20 1 -2.5313 7.3483 7.4181 21 6 4.2103 0.3513 1.0386 22 6 4.9659 1.4830 0.3223 23 6 4.0729 2.4647 1.0994 24 1 -0.5401 -0.9352 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3587 2.1316 0.0897 28 1 2.6214 1.4025 -0.9313 29 1 1.4765 3.0682 2.3955 30 1 0.0996 1.2738 4.0867 31 1 1.4565 1.9761 4.9999 32 1 1.4746 4.6956 3.5800 33 1 0.3224 5.5066 4.6672 34 1 1.5864 4.4484 5.3392 35 1 -1.6745 2.7588 3.1443 36 1 -1.5816 4.5201 3.3858 37 1 -0.4297 3.7089 2.2983 38 1 -1.5181 2.4115 5.6129 39 1 -0.1617 3.1142 6.5266 40 1 -3.0889 3.7179 8.6774 41 1 4.6564 0.0626 1.9904 42 1 3.9909 -0.5019 0.3967 43 1 4.8024 1.5034 -0.7552 44 1 6.0200 1.5438 0.5928 45 1 3.7427 3.3177 0.5065 46 1 4.4814 2.7538 2.0677 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359757555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:43 Heat of formation + Delta-G solvation = -26.267300 kcal Electronic energy + Delta-G solvation = -22725.767213 eV Core-core repulsion = 19615.531452 eV Total energy + Delta-G solvation = -3110.235761 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.69482 -38.19611 -36.76329 -34.41853 -33.51193 -32.04908 -28.74058 -27.11945 -26.50971 -26.41301 -25.76211 -24.54074 -22.77291 -20.72611 -20.09473 -18.90037 -17.97857 -17.07081 -16.31769 -15.68314 -15.63150 -15.00362 -14.52367 -14.51800 -14.20788 -13.93129 -13.55628 -13.18479 -12.88056 -12.73573 -12.51407 -12.16911 -12.08929 -12.03366 -11.93507 -11.24851 -11.24392 -11.13269 -11.00008 -10.86842 -10.68547 -10.62710 -10.43433 -10.36255 -10.25585 -9.86615 -9.58984 -9.35942 -9.07999 -8.91423 -8.63693 -8.35343 -5.99507 -4.00923 2.22045 2.89037 3.31935 3.37435 3.38293 3.52533 4.21594 4.36196 4.45316 4.59560 4.59878 4.93685 5.02303 5.14017 5.29295 5.35832 5.37465 5.51374 5.55860 5.61652 5.64289 5.67367 5.73139 5.76339 5.80601 5.93435 5.99901 6.17899 6.21316 6.24537 6.32143 6.40908 6.56461 6.60659 6.63168 6.68848 6.81359 7.07007 7.07735 7.14152 7.64402 7.77125 7.84362 7.99206 8.40744 8.53338 9.03685 9.62091 11.11926 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.027806 B = 0.003781 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.728021 B = 7403.752869 C = 7625.743117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.157 4.157 3 C -0.063 4.063 4 C -0.102 4.102 5 C 0.526 3.474 6 O -0.545 6.545 7 N -0.719 5.719 8 C 0.128 3.872 9 C -0.072 4.072 10 C -0.126 4.126 11 C -0.126 4.126 12 C 0.037 3.963 13 C -0.512 4.512 14 H 0.059 0.941 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.111 4.111 22 C -0.141 4.141 23 C -0.127 4.127 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.397 0.603 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.028 0.972 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.260 0.740 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.584 -2.771 -17.713 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.175 4.175 3 C -0.100 4.100 4 C -0.106 4.106 5 C 0.311 3.689 6 O -0.422 6.422 7 N -0.370 5.370 8 C 0.006 3.994 9 C -0.072 4.072 10 C -0.184 4.184 11 C -0.183 4.183 12 C -0.001 4.001 13 C -0.550 4.550 14 H 0.077 0.923 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.149 4.149 22 C -0.178 4.178 23 C -0.165 4.165 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.127 0.873 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.231 0.769 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.575 -3.532 -17.018 20.882 hybrid contribution -0.770 1.164 0.153 1.404 sum 10.805 -2.368 -16.865 20.169 Atomic orbital electron populations 1.23861 0.95900 1.02004 1.00341 1.22805 0.95970 0.98185 1.00505 1.20484 0.97006 0.96299 0.96245 1.22122 0.94919 1.00052 0.93481 1.20245 0.78758 0.82752 0.87153 1.90668 1.62896 1.32305 1.56322 1.46161 1.45617 1.18862 1.26362 1.21598 0.93861 0.99025 0.84965 1.20892 0.95002 0.92187 0.99145 1.21754 0.98396 0.99263 0.98959 1.21750 0.98663 1.02588 0.95310 1.19081 0.94157 0.97383 0.89467 1.21147 1.25336 1.01396 1.07121 0.92335 1.25014 0.97027 0.96191 0.96226 1.69961 1.39516 1.31468 1.12453 0.86712 0.80304 0.83838 0.77456 1.20333 1.21392 1.20327 1.22818 0.94273 0.96330 1.01471 1.22840 0.99037 0.96479 0.99488 1.22976 0.95871 0.96210 1.01440 0.88512 0.88486 0.87331 0.90778 0.89956 0.76852 0.92048 0.91979 0.95281 0.91477 0.93404 0.93401 0.91491 0.95331 0.96399 0.96397 0.92987 0.89151 0.90993 0.89958 0.91127 0.90624 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 14.32 29.02 0.42 -1.60 16 2 C -0.16 -1.68 8.66 -36.03 -0.31 -2.00 16 3 C -0.06 -0.59 5.03 -27.88 -0.14 -0.73 16 4 C -0.10 -1.11 0.78 -154.84 -0.12 -1.24 16 5 C 0.53 7.95 6.21 -10.98 -0.07 7.88 16 6 O -0.54 -10.50 16.18 5.56 0.09 -10.41 16 7 N -0.72 -10.61 4.96 -60.29 -0.30 -10.91 16 8 C 0.13 2.32 4.57 -4.04 -0.02 2.30 16 9 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 10 C -0.13 -2.22 8.05 37.16 0.30 -1.93 16 11 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 12 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 13 C -0.51 -13.60 7.65 -34.44 -0.26 -13.86 16 14 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 15 C 0.06 1.58 5.46 -17.81 -0.10 1.48 16 16 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 17 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.11 -1.14 6.75 -25.92 -0.17 -1.31 16 22 C -0.14 -1.10 7.73 -25.92 -0.20 -1.30 16 23 C -0.13 -1.13 7.22 -25.92 -0.19 -1.32 16 24 H 0.10 0.99 8.06 -52.49 -0.42 0.57 16 25 H 0.10 1.03 7.84 -52.48 -0.41 0.62 16 26 H 0.11 1.15 7.50 -52.48 -0.39 0.75 16 27 H 0.07 0.68 7.79 -51.93 -0.40 0.28 16 28 H 0.08 0.62 7.30 -51.93 -0.38 0.24 16 29 H 0.40 5.02 6.17 -40.82 -0.25 4.77 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 33 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 37 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.09 1.08 7.73 -51.92 -0.40 0.68 16 42 H 0.07 0.68 7.35 -51.93 -0.38 0.30 16 43 H 0.08 0.53 7.60 -51.93 -0.39 0.14 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 46 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 LS Contribution 361.83 15.07 5.45 5.45 Total: -1.00 -30.77 361.83 -7.88 -38.65 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -8.07 Total: 3.01 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -0.77 Total: -16.20 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.44 Total: -36.67 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.77 -7.88 -38.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359757555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.380 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds