Wall clock time and date at job start Tue Mar 31 2020 01:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00674 * 2 1 4 4 C 1.53002 * 109.47007 * 124.99875 * 3 2 1 5 5 C 1.50707 * 112.84998 * 298.08291 * 4 3 2 6 6 O 1.21277 * 119.99821 * 113.50534 * 5 4 3 7 7 N 1.34775 * 119.99672 * 293.77488 * 5 4 3 8 8 C 1.46502 * 119.99573 * 174.75909 * 7 5 4 9 9 C 1.53001 * 109.47030 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.47002 * 300.00047 * 9 8 7 11 11 C 1.53006 * 109.47183 * 60.00042 * 9 8 7 12 12 C 1.53001 * 109.47091 * 179.97438 * 9 8 7 13 13 C 1.50699 * 109.46797 * 179.97438 * 12 9 8 14 14 H 1.08001 * 120.00530 * 0.02562 * 13 12 9 15 15 C 1.37880 * 119.99903 * 180.02562 * 13 12 9 16 16 N 1.31523 * 119.99634 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00198 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46886 * 60.00176 * 17 15 13 19 19 H 1.48500 * 109.47270 * 179.97438 * 17 15 13 20 20 H 1.48490 * 109.47014 * 299.99986 * 17 15 13 21 21 C 1.53781 * 113.68935 * 69.35133 * 4 3 2 22 22 C 1.53781 * 87.08126 * 89.12647 * 21 4 3 23 23 C 1.53781 * 113.61501 * 166.88781 * 4 3 2 24 24 H 1.07993 * 120.00686 * 179.97438 * 1 2 3 25 25 H 1.08007 * 119.99615 * 359.97438 * 1 2 3 26 26 H 1.08007 * 119.99615 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46856 * 5.00465 * 3 2 1 28 28 H 1.08996 * 109.47659 * 244.99873 * 3 2 1 29 29 H 0.96994 * 120.00469 * 354.76309 * 7 5 4 30 30 H 1.09000 * 109.47149 * 300.00464 * 8 7 5 31 31 H 1.09003 * 109.46858 * 60.00377 * 8 7 5 32 32 H 1.09001 * 109.47085 * 60.00149 * 10 9 8 33 33 H 1.09000 * 109.47075 * 179.97438 * 10 9 8 34 34 H 1.09000 * 109.47434 * 299.99636 * 10 9 8 35 35 H 1.09000 * 109.46935 * 59.99820 * 11 9 8 36 36 H 1.08998 * 109.46818 * 180.02562 * 11 9 8 37 37 H 1.08994 * 109.47028 * 300.00351 * 11 9 8 38 38 H 1.09000 * 109.47194 * 300.00282 * 12 9 8 39 39 H 1.09003 * 109.46752 * 60.00157 * 12 9 8 40 40 H 0.97002 * 119.99342 * 180.02562 * 16 15 13 41 41 H 1.09007 * 113.61412 * 203.67538 * 21 4 3 42 42 H 1.09001 * 113.61439 * 334.57575 * 21 4 3 43 43 H 1.08994 * 113.61181 * 270.88568 * 22 21 4 44 44 H 1.09002 * 113.61556 * 139.97869 * 22 21 4 45 45 H 1.09002 * 113.61628 * 25.34530 * 23 4 3 46 46 H 1.08995 * 113.61806 * 156.25157 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3328 1.1817 5 6 2.3375 1.2492 2.5149 6 8 2.4888 0.2728 3.2182 7 7 1.5412 2.2570 2.9232 8 6 0.7733 2.1271 4.1641 9 6 -0.0421 3.4009 4.3949 10 6 0.9033 4.5990 4.5032 11 6 -1.0010 3.6124 3.2215 12 6 -0.8445 3.2650 5.6905 13 6 -1.6472 4.5200 5.9181 14 1 -1.5910 5.3330 5.2095 15 6 -2.4534 4.6303 7.0312 16 7 -2.5215 3.6404 7.8945 17 14 -3.4489 6.1856 7.3131 18 1 -4.3797 6.3907 6.1743 19 1 -4.2277 6.0537 8.5706 20 1 -2.5313 7.3483 7.4181 21 6 4.2103 0.3513 1.0386 22 6 4.9659 1.4830 0.3223 23 6 4.0729 2.4647 1.0994 24 1 -0.5401 -0.9352 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3587 2.1316 0.0897 28 1 2.6214 1.4025 -0.9313 29 1 1.4765 3.0682 2.3955 30 1 0.0996 1.2738 4.0867 31 1 1.4565 1.9761 4.9999 32 1 1.4746 4.6956 3.5800 33 1 0.3224 5.5066 4.6672 34 1 1.5864 4.4484 5.3392 35 1 -1.6745 2.7588 3.1443 36 1 -1.5816 4.5201 3.3858 37 1 -0.4297 3.7089 2.2983 38 1 -1.5181 2.4115 5.6129 39 1 -0.1617 3.1142 6.5266 40 1 -3.0889 3.7179 8.6774 41 1 4.6564 0.0626 1.9904 42 1 3.9909 -0.5019 0.3967 43 1 4.8024 1.5034 -0.7552 44 1 6.0200 1.5438 0.5928 45 1 3.7427 3.3177 0.5065 46 1 4.4814 2.7538 2.0677 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359757555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:43 Heat of formation + Delta-G solvation = -43.822572 kcal Electronic energy + Delta-G solvation = -22726.528467 eV Core-core repulsion = 19615.531452 eV Total energy + Delta-G solvation = -3110.997015 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.71269 -39.45121 -38.19176 -35.30984 -35.09524 -33.88251 -29.72399 -28.97952 -27.96699 -27.70294 -26.54906 -25.70099 -24.49420 -21.87322 -20.91123 -20.18706 -19.19190 -18.38300 -18.10122 -16.99951 -16.57537 -16.43092 -16.19493 -15.51637 -15.34839 -14.95685 -14.84060 -14.67379 -14.36487 -14.00305 -13.93660 -13.62349 -13.26880 -12.89616 -12.82660 -12.77680 -12.73268 -12.58147 -12.33396 -12.22537 -12.07731 -12.00517 -11.97185 -11.53948 -11.43678 -11.16963 -11.05225 -10.89119 -10.52117 -10.50850 -10.16769 -10.01669 -8.13901 -6.22201 1.39245 1.42674 1.44952 1.52158 1.69623 2.28870 2.45760 3.20420 3.41452 3.57315 3.82122 3.91208 3.95435 4.05957 4.08385 4.21472 4.22675 4.34587 4.62607 4.67588 4.69586 4.71453 4.79244 4.83299 4.91320 4.95704 4.98851 5.01950 5.10784 5.11933 5.13974 5.18173 5.26135 5.40605 5.47845 5.49238 5.52209 5.53793 5.58627 5.75413 5.79704 5.87253 5.89367 6.29812 6.65006 6.92877 7.32981 7.45768 8.98556 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.027806 B = 0.003781 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.728021 B = 7403.752869 C = 7625.743117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C -0.059 4.059 4 C -0.100 4.100 5 C 0.521 3.479 6 O -0.593 6.593 7 N -0.706 5.706 8 C 0.142 3.858 9 C -0.063 4.063 10 C -0.121 4.121 11 C -0.120 4.120 12 C 0.040 3.960 13 C -0.514 4.514 14 H 0.074 0.926 15 C -0.005 4.005 16 N -0.940 5.940 17 Si 0.959 3.041 18 H -0.266 1.266 19 H -0.292 1.292 20 H -0.266 1.266 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.123 4.123 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.411 0.589 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.056 0.944 37 H 0.070 0.930 38 H -0.016 1.016 39 H -0.017 1.017 40 H 0.259 0.741 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.497 -0.401 -20.909 24.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.181 4.181 3 C -0.096 4.096 4 C -0.103 4.103 5 C 0.309 3.691 6 O -0.474 6.474 7 N -0.358 5.358 8 C 0.018 3.982 9 C -0.064 4.064 10 C -0.178 4.178 11 C -0.177 4.177 12 C 0.003 3.997 13 C -0.552 4.552 14 H 0.092 0.908 15 C -0.202 4.202 16 N -0.581 5.581 17 Si 0.784 3.216 18 H -0.190 1.190 19 H -0.218 1.218 20 H -0.191 1.191 21 C -0.159 4.159 22 C -0.162 4.162 23 C -0.161 4.161 24 H 0.113 0.887 25 H 0.120 0.880 26 H 0.123 0.877 27 H 0.101 0.899 28 H 0.131 0.869 29 H 0.249 0.751 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.002 0.998 39 H 0.001 0.999 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.125 0.875 44 H 0.096 0.904 45 H 0.121 0.879 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.500 -1.127 -20.257 23.830 hybrid contribution -1.021 0.320 1.178 1.592 sum 11.478 -0.807 -19.079 22.280 Atomic orbital electron populations 1.23973 0.96261 1.02275 1.00992 1.23001 0.96075 0.99075 0.99953 1.20560 0.96910 0.95574 0.96591 1.22235 0.95119 1.01859 0.91091 1.21159 0.77958 0.81597 0.88360 1.90651 1.64409 1.34165 1.58141 1.45957 1.45062 1.19697 1.25107 1.21160 0.93225 0.97775 0.86038 1.20692 0.95259 0.93432 0.96981 1.21687 0.97915 0.97532 1.00673 1.21677 0.98374 1.01509 0.96132 1.18963 0.93473 0.95743 0.91533 1.21562 1.24654 1.01988 1.07024 0.90806 1.25969 0.98525 0.99537 0.96173 1.70130 1.40802 1.33951 1.13201 0.85583 0.78818 0.79803 0.77351 1.19043 1.21758 1.19062 1.22856 0.94665 0.97518 1.00877 1.22824 0.99009 0.93901 1.00430 1.23009 0.94861 0.96591 1.01600 0.88670 0.88037 0.87685 0.89880 0.86894 0.75082 0.94144 0.94217 0.91100 0.92417 0.94652 0.94556 0.92465 0.91107 0.99801 0.99871 0.93187 0.91764 0.90460 0.87502 0.90407 0.87933 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.11 14.32 67.78 0.97 -3.14 16 2 C -0.16 -3.22 8.66 25.65 0.22 -3.00 16 3 C -0.06 -0.91 5.03 29.85 0.15 -0.76 16 4 C -0.10 -1.93 0.78 -52.40 -0.04 -1.97 16 5 C 0.52 15.41 6.21 87.66 0.54 15.95 16 6 O -0.59 -23.55 16.18 -3.02 -0.05 -23.60 16 7 N -0.71 -19.90 4.96 -463.05 -2.29 -22.20 16 8 C 0.14 5.27 4.57 86.38 0.39 5.66 16 9 C -0.06 -2.41 0.54 -52.18 -0.03 -2.43 16 10 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 11 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 12 C 0.04 2.09 4.04 29.85 0.12 2.21 16 13 C -0.51 -27.63 7.65 25.60 0.20 -27.44 16 14 H 0.07 3.68 5.68 -2.91 -0.02 3.66 16 15 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 16 N -0.94 -57.61 13.29 21.45 0.28 -57.32 16 17 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 C -0.12 -2.29 6.75 31.12 0.21 -2.08 16 22 C -0.12 -1.48 7.73 31.12 0.24 -1.24 16 23 C -0.12 -1.73 7.22 31.12 0.22 -1.50 16 24 H 0.09 1.93 8.06 -2.91 -0.02 1.91 16 25 H 0.10 1.98 7.84 -2.91 -0.02 1.95 16 26 H 0.11 2.11 7.50 -2.91 -0.02 2.09 16 27 H 0.08 1.15 7.79 -2.38 -0.02 1.13 16 28 H 0.11 1.11 7.30 -2.39 -0.02 1.09 16 29 H 0.41 8.99 6.17 -92.71 -0.57 8.42 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.78 6.86 -2.39 -0.02 1.76 16 33 H 0.06 2.06 6.62 -2.39 -0.02 2.04 16 34 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 37 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 38 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 39 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 40 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 41 H 0.06 1.55 7.73 -2.38 -0.02 1.53 16 42 H 0.08 1.34 7.35 -2.39 -0.02 1.33 16 43 H 0.11 0.81 7.60 -2.39 -0.02 0.79 16 44 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.10 0.94 8.10 -2.39 -0.02 0.92 16 46 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 Total: -1.00 -70.71 361.83 5.16 -65.55 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.36 Total: 18.46 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 4.83 Total: -26.45 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -2.01 Total: -79.52 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.05 Total: -23.60 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -70.71 5.16 -65.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359757555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.732 kcal (2) G-P(sol) polarization free energy of solvation -70.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds