Wall clock time and date at job start Tue Mar 31 2020 01:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47275 * 2 1 4 4 C 1.52997 * 109.46686 * 239.99930 * 2 1 3 5 5 C 1.50705 * 109.47199 * 60.00205 * 4 2 1 6 6 H 1.07996 * 119.99558 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00163 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99802 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00009 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46703 * 89.99810 * 9 7 5 11 11 H 1.48497 * 109.46802 * 210.00002 * 9 7 5 12 12 H 1.48502 * 109.46871 * 330.00124 * 9 7 5 13 13 C 1.53003 * 109.47042 * 120.00242 * 2 1 3 14 14 N 1.46495 * 109.47201 * 299.99650 * 13 2 1 15 15 C 1.34781 * 120.00110 * 179.97438 * 14 13 2 16 16 O 1.21615 * 119.99463 * 0.02562 * 15 14 13 17 17 C 1.47095 * 119.99825 * 179.97438 * 15 14 13 18 18 C 1.31567 * 119.84844 * 180.02562 * 17 15 14 19 19 C 1.51416 * 120.28807 * 179.97438 * 18 17 15 20 20 C 1.53036 * 108.57316 * 71.58654 * 19 18 17 21 21 C 1.51777 * 110.81062 * 274.28308 * 20 19 18 22 22 C 1.51786 * 113.84147 * 66.94238 * 21 20 19 23 23 C 1.51409 * 119.85773 * 359.97438 * 17 15 14 24 24 H 1.09006 * 109.46407 * 299.99886 * 1 2 3 25 25 H 1.08993 * 109.47147 * 59.99814 * 1 2 3 26 26 H 1.09001 * 109.47287 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46671 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47273 * 300.00336 * 3 2 1 29 29 H 1.08996 * 109.46860 * 60.00383 * 3 2 1 30 30 H 1.09004 * 109.47372 * 179.97438 * 4 2 1 31 31 H 1.09004 * 109.47761 * 300.00031 * 4 2 1 32 32 H 0.96998 * 120.00117 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46539 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.47072 * 60.00173 * 13 2 1 35 35 H 0.96998 * 119.99990 * 0.02562 * 14 13 2 36 36 H 1.07992 * 119.85439 * 0.25251 * 18 17 15 37 37 H 1.09002 * 109.61778 * 191.31330 * 19 18 17 38 38 H 1.08996 * 109.61877 * 311.67281 * 19 18 17 39 39 H 1.09004 * 109.21328 * 34.62887 * 20 19 18 40 40 H 1.09006 * 109.20656 * 153.98978 * 20 19 18 41 41 H 1.08991 * 108.61196 * 188.06916 * 21 20 19 42 42 H 1.08996 * 108.61254 * 305.96252 * 21 20 19 43 43 H 1.09002 * 109.20924 * 53.39961 * 22 21 20 44 44 H 1.08997 * 109.20960 * 172.76092 * 22 21 20 45 45 H 1.08994 * 109.61661 * 348.70313 * 23 17 15 46 46 H 1.09004 * 109.61952 * 228.15299 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3805 7 6 1.8710 -0.4816 -3.7320 8 7 2.6278 -1.5503 -3.8527 9 14 1.2477 0.3987 -5.2572 10 1 2.2252 1.4411 -5.6612 11 1 1.0834 -0.5806 -6.3614 12 1 -0.0609 1.0352 -4.9612 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8770 -0.4916 3.6695 16 8 2.5761 -1.4804 3.7810 17 6 1.3872 0.2022 4.8706 18 6 1.7068 -0.2499 6.0641 19 6 1.2086 0.4569 7.3070 20 6 -0.2933 0.1980 7.4460 21 6 -1.0912 1.2063 6.6397 22 6 -0.9112 1.0719 5.1386 23 6 0.5184 1.4340 4.7279 24 1 -0.3632 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1300 -0.7209 -1.2496 31 1 1.6766 -1.7490 -1.2493 32 1 2.8621 -1.8817 -4.7337 33 1 3.1301 -0.7217 1.2489 34 1 1.6767 -1.7490 1.2492 35 1 0.9939 0.7577 2.3564 36 1 2.3309 -1.1262 6.1576 37 1 1.7294 0.0687 8.1823 38 1 1.3914 1.5276 7.2173 39 1 -0.5188 -0.8066 7.0879 40 1 -0.5750 0.2760 8.4961 41 1 -2.1480 1.0824 6.8757 42 1 -0.7849 2.2094 6.9362 43 1 -1.1198 0.0437 4.8429 44 1 -1.6089 1.7392 4.6325 45 1 0.5277 1.7703 3.6911 46 1 0.8960 2.2253 5.3756 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359767788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:47 Heat of formation + Delta-G solvation = -60.866700 kcal Electronic energy + Delta-G solvation = -22357.826076 eV Core-core repulsion = 19246.089973 eV Total energy + Delta-G solvation = -3111.736104 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.06087 -38.20571 -36.97977 -33.71986 -32.73104 -32.31436 -31.73679 -27.20356 -26.55893 -26.51043 -25.69737 -24.27723 -22.87293 -21.09565 -20.52279 -18.90052 -17.67919 -17.18135 -16.34017 -15.91958 -15.09597 -14.99050 -14.80786 -14.47445 -13.99036 -13.89832 -13.62159 -13.31628 -13.23019 -13.02117 -12.69188 -12.20242 -12.15293 -12.05323 -11.86014 -11.34946 -11.14929 -11.01493 -10.97221 -10.92255 -10.84790 -10.70905 -10.63552 -10.39144 -10.25104 -9.87218 -9.71864 -9.18554 -9.15361 -8.91878 -8.64498 -8.35628 -5.99581 -4.00927 1.43918 3.30982 3.37906 3.39485 3.46198 3.50570 4.39934 4.45392 4.57846 4.58679 4.78382 4.80065 4.99225 5.12333 5.24469 5.35896 5.38093 5.42841 5.51264 5.54522 5.62039 5.63714 5.75394 5.80201 5.84850 5.88183 5.92598 6.11453 6.17463 6.23321 6.27829 6.38326 6.40318 6.51829 6.59087 6.63100 6.79366 7.06489 7.07623 7.13547 7.64588 7.77055 7.81603 7.99201 8.40565 8.49130 9.03885 9.62158 11.11927 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035327 B = 0.003345 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.396686 B = 8368.619046 C = 8829.750978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.127 3.873 14 N -0.716 5.716 15 C 0.545 3.455 16 O -0.551 6.551 17 C -0.175 4.175 18 C -0.078 4.078 19 C -0.095 4.095 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.082 4.082 24 H 0.028 0.972 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.398 0.602 36 H 0.125 0.875 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.624 7.371 21.232 23.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.004 3.996 14 N -0.368 5.368 15 C 0.332 3.668 16 O -0.431 6.431 17 C -0.178 4.178 18 C -0.098 4.098 19 C -0.132 4.132 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.119 4.119 24 H 0.047 0.953 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.235 0.765 36 H 0.143 0.857 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.062 6.554 21.132 22.940 hybrid contribution -0.467 0.697 -1.096 1.381 sum -6.529 7.252 20.035 22.285 Atomic orbital electron populations 1.21761 0.95288 1.01173 1.00182 1.20909 0.95470 0.95852 0.95098 1.21761 1.00576 0.95907 1.00171 1.19089 0.96360 0.95223 0.89457 1.21185 1.31161 1.12065 0.90522 0.92256 1.25016 0.95336 0.95071 0.99084 1.69965 1.36961 1.23035 1.23435 0.86649 0.79183 0.79411 0.83071 1.20776 1.21339 1.19938 1.21637 0.98937 0.96046 0.82972 1.46193 1.52893 1.31862 1.05848 1.18417 0.80408 0.84131 0.83818 1.90772 1.38713 1.26575 1.87062 1.21286 1.03070 0.99701 0.93727 1.23289 0.95058 0.98199 0.93232 1.20943 0.96001 1.00562 0.95724 1.21263 0.93837 1.00095 0.99991 1.21135 1.00046 0.99389 0.95021 1.21316 0.95786 1.02457 0.95859 1.20790 0.94207 0.94936 1.01988 0.95319 0.91401 0.93352 0.93334 0.91397 0.95344 0.96340 0.96334 0.93038 0.91801 0.91816 0.76484 0.85733 0.90877 0.90420 0.91607 0.91572 0.92172 0.92182 0.91589 0.91362 0.91275 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 2 C -0.07 -1.40 0.54 -154.51 -0.08 -1.49 16 3 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.60 7.65 -34.44 -0.26 -13.87 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.13 2.33 4.56 -4.04 -0.02 2.31 16 14 N -0.72 -10.98 4.92 -61.49 -0.30 -11.28 16 15 C 0.54 8.71 7.75 -12.67 -0.10 8.61 16 16 O -0.55 -10.96 16.18 5.26 0.09 -10.87 16 17 C -0.17 -2.10 5.10 -102.54 -0.52 -2.62 16 18 C -0.08 -0.84 8.92 -35.81 -0.32 -1.16 16 19 C -0.10 -0.72 5.61 -27.51 -0.15 -0.88 16 20 C -0.11 -0.81 5.66 -27.33 -0.15 -0.96 16 21 C -0.12 -0.81 5.28 -27.97 -0.15 -0.96 16 22 C -0.12 -0.95 5.66 -27.30 -0.15 -1.11 16 23 C -0.08 -0.75 5.37 -27.49 -0.15 -0.90 16 24 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 25 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 29 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.40 5.22 3.94 -40.82 -0.16 5.06 16 36 H 0.12 1.51 7.44 -52.49 -0.39 1.12 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.54 6.76 -51.93 -0.35 0.19 16 39 H 0.07 0.54 7.85 -51.93 -0.41 0.13 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.37 7.87 -51.93 -0.41 -0.04 16 43 H 0.07 0.63 7.85 -51.93 -0.41 0.22 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.63 5.99 -51.93 -0.31 0.32 16 46 H 0.08 0.62 6.74 -51.93 -0.35 0.27 16 LS Contribution 349.76 15.07 5.27 5.27 Total: -1.00 -30.92 349.76 -8.76 -39.67 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -7.85 Total: 1.48 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -1.68 Total: -14.67 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.43 Total: -37.08 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.92 -8.76 -39.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359767788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.193 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds