Wall clock time and date at job start Tue Mar 31 2020 01:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50697 * 119.99925 * 2 1 4 4 C 1.52993 * 109.47722 * 124.72534 * 3 2 1 5 5 C 1.52995 * 109.47612 * 175.00008 * 4 3 2 6 6 C 1.50705 * 115.54993 * 65.26886 * 5 4 3 7 7 O 1.21275 * 119.99964 * 245.37810 * 6 5 4 8 8 N 1.34773 * 119.99607 * 65.38099 * 6 5 4 9 9 C 1.46506 * 119.99541 * 174.91739 * 8 6 5 10 10 C 1.53001 * 109.46808 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47274 * 299.99696 * 10 9 8 12 12 C 1.52996 * 109.47202 * 60.00070 * 10 9 8 13 13 C 1.53006 * 109.46716 * 180.02562 * 10 9 8 14 14 C 1.50701 * 109.46831 * 180.02562 * 13 10 9 15 15 H 1.08004 * 120.00103 * 359.97438 * 14 13 10 16 16 C 1.37875 * 119.99984 * 180.02562 * 14 13 10 17 17 N 1.31513 * 119.99956 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00146 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46805 * 89.99809 * 18 16 14 20 20 H 1.48500 * 109.47301 * 209.99621 * 18 16 14 21 21 H 1.48490 * 109.47109 * 329.99865 * 18 16 14 22 22 C 1.52996 * 117.49865 * 279.59803 * 5 4 3 23 23 C 1.53006 * 117.49883 * 210.93860 * 5 4 3 24 24 H 1.07998 * 119.99637 * 0.28133 * 1 2 3 25 25 H 1.07997 * 119.99973 * 180.28106 * 1 2 3 26 26 H 1.07998 * 119.99637 * 179.71867 * 2 1 3 27 27 H 1.09007 * 109.47014 * 244.72268 * 3 2 1 28 28 H 1.08997 * 109.47158 * 4.71834 * 3 2 1 29 29 H 1.09004 * 109.46956 * 294.99933 * 4 3 2 30 30 H 1.09000 * 109.47496 * 54.99481 * 4 3 2 31 31 H 0.96997 * 120.00435 * 354.91246 * 8 6 5 32 32 H 1.08999 * 109.47106 * 299.99671 * 9 8 6 33 33 H 1.09000 * 109.47166 * 60.00133 * 9 8 6 34 34 H 1.08998 * 109.47125 * 60.00586 * 11 10 9 35 35 H 1.09001 * 109.46825 * 180.02562 * 11 10 9 36 36 H 1.08995 * 109.47356 * 300.00334 * 11 10 9 37 37 H 1.08999 * 109.47048 * 59.99672 * 12 10 9 38 38 H 1.09001 * 109.47293 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.47464 * 299.99948 * 12 10 9 40 40 H 1.09000 * 109.47168 * 299.99529 * 13 10 9 41 41 H 1.08995 * 109.47210 * 60.00097 * 13 10 9 42 42 H 0.97000 * 120.00106 * 180.02562 * 17 16 14 43 43 H 1.09001 * 117.50062 * 0.02562 * 22 5 4 44 44 H 1.08997 * 117.49910 * 145.01562 * 22 5 4 45 45 H 1.09003 * 117.49576 * 214.97826 * 23 5 4 46 46 H 1.08994 * 117.49696 * 359.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0302 1.3361 1.1855 5 6 3.8829 2.6044 1.1154 6 6 3.1334 3.9015 1.2801 7 8 3.0686 4.6857 0.3574 8 7 2.5354 4.1898 2.4530 9 6 1.9026 5.4962 2.6508 10 6 1.3023 5.5645 4.0565 11 6 0.2550 4.4609 4.2180 12 6 2.4102 5.3721 5.0940 13 6 0.6409 6.9286 4.2628 14 6 0.0502 6.9961 5.6476 15 1 0.1374 6.1504 6.3137 16 6 -0.6025 8.1370 6.0638 17 7 -0.7092 9.1666 5.2526 18 14 -1.3353 8.2205 7.7801 19 1 -0.3221 8.7543 8.7255 20 1 -2.5213 9.1141 7.7690 21 1 -1.7450 6.8595 8.2100 22 6 5.0826 2.5974 0.1659 23 6 5.3034 2.5327 1.6793 24 1 -0.5399 0.9353 -0.0046 25 1 -0.5400 -0.9353 0.0046 26 1 1.8500 -0.9353 0.0046 27 1 2.6253 1.4003 -0.9293 28 1 1.3582 2.1318 0.0845 29 1 2.4634 1.3303 2.1166 30 1 3.6780 0.4602 1.1491 31 1 2.5239 3.5323 3.1661 32 1 2.6486 6.2825 2.5353 33 1 1.1130 5.6331 1.9119 34 1 0.7258 3.4889 4.0709 35 1 -0.1729 4.5098 5.2193 36 1 -0.5342 4.5979 3.4789 37 1 3.1563 6.1583 4.9789 38 1 1.9826 5.4211 6.0955 39 1 2.8810 4.4001 4.9469 40 1 1.3867 7.7152 4.1477 41 1 -0.1484 7.0653 3.5237 42 1 -1.1680 9.9694 5.5455 43 1 5.2642 1.6894 -0.4091 44 1 5.3301 3.5310 -0.3393 45 1 5.6960 3.4238 2.1691 46 1 5.6302 1.5821 2.1006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359767834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:36 Heat of formation + Delta-G solvation = -25.983191 kcal Electronic energy + Delta-G solvation = -22270.488922 eV Core-core repulsion = 19160.265481 eV Total energy + Delta-G solvation = -3110.223441 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.16701 -37.73806 -36.61346 -35.11163 -33.55576 -32.05484 -30.31281 -27.23008 -26.57342 -26.51616 -24.54118 -23.26759 -22.62784 -21.88168 -19.91535 -19.48519 -18.04419 -16.79924 -16.32273 -15.75913 -15.52344 -15.36216 -14.58826 -14.51418 -14.32058 -13.72879 -13.37359 -13.22646 -13.12155 -12.78774 -12.71290 -12.28988 -12.09372 -12.05252 -11.70107 -11.37027 -11.20763 -11.15515 -11.01952 -10.85625 -10.64386 -10.53269 -10.42661 -10.30128 -10.21317 -9.88128 -9.65975 -9.45503 -9.15064 -8.92658 -8.69818 -8.36342 -6.00314 -4.01691 2.11023 2.75532 3.30506 3.32178 3.37710 3.39673 3.62327 4.35209 4.44799 4.62964 4.69667 4.82253 4.85712 5.09890 5.22089 5.33534 5.35230 5.41173 5.44267 5.51111 5.62161 5.69716 5.72700 5.74724 5.80910 5.88037 5.97174 6.02931 6.17010 6.22598 6.28881 6.38945 6.46292 6.57664 6.61408 6.62519 6.77827 7.05786 7.06870 7.12472 7.63485 7.75829 7.78585 7.98360 8.39577 8.46563 9.03100 9.61507 11.11171 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.021484 B = 0.003714 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.997177 B = 7536.659346 C = 8135.033334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C -0.094 4.094 4 C -0.069 4.069 5 C -0.159 4.159 6 C 0.544 3.456 7 O -0.543 6.543 8 N -0.716 5.716 9 C 0.128 3.872 10 C -0.072 4.072 11 C -0.127 4.127 12 C -0.127 4.127 13 C 0.036 3.964 14 C -0.511 4.511 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.145 4.145 23 C -0.159 4.159 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.399 0.601 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.029 0.971 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.260 0.740 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.920 -18.184 -7.307 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.173 4.173 3 C -0.131 4.131 4 C -0.107 4.107 5 C -0.162 4.162 6 C 0.329 3.671 7 O -0.420 6.420 8 N -0.367 5.367 9 C 0.005 3.995 10 C -0.072 4.072 11 C -0.184 4.184 12 C -0.184 4.184 13 C -0.001 4.001 14 C -0.549 4.549 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.183 4.183 23 C -0.196 4.196 24 H 0.116 0.884 25 H 0.114 0.886 26 H 0.125 0.875 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.234 0.766 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.048 0.952 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.070 0.930 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.791 -17.404 -7.965 21.063 hybrid contribution -0.533 -0.102 1.309 1.417 sum 8.258 -17.506 -6.656 20.469 Atomic orbital electron populations 1.23908 0.96067 1.01936 1.01043 1.22945 0.96043 0.98251 1.00062 1.20730 0.98226 0.95452 0.98716 1.21014 0.96786 0.93948 0.98950 1.21530 0.90638 0.95203 1.08833 1.19445 0.78782 0.86298 0.82536 1.90688 1.60940 1.50311 1.40080 1.46143 1.56662 1.18336 1.15517 1.21640 0.96704 0.82931 0.98241 1.20899 0.95255 0.99936 0.91158 1.21754 0.98258 0.95497 1.02874 1.21757 0.97616 0.98643 1.00389 1.19089 0.95251 0.88644 0.97149 1.21182 1.34986 0.99786 0.98988 0.92261 1.25011 0.96417 0.95912 0.97133 1.69965 1.43256 1.04555 1.35619 0.86651 0.78787 0.77907 0.84986 1.20774 1.21331 1.19935 1.22972 0.98672 1.04018 0.92597 1.23097 0.95681 1.03823 0.97022 0.88441 0.88617 0.87536 0.90664 0.91284 0.91033 0.90854 0.76596 0.91947 0.91821 0.95260 0.91427 0.93394 0.93411 0.91436 0.95213 0.96385 0.96351 0.93036 0.88103 0.87903 0.88328 0.87933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 14.32 29.01 0.42 -1.36 16 2 C -0.16 -1.39 9.52 -36.03 -0.34 -1.74 16 3 C -0.09 -0.95 5.46 -27.89 -0.15 -1.10 16 4 C -0.07 -0.64 5.07 -26.74 -0.14 -0.77 16 5 C -0.16 -1.74 1.90 -155.66 -0.30 -2.04 16 6 C 0.54 8.21 6.57 -10.98 -0.07 8.14 16 7 O -0.54 -10.40 16.70 5.56 0.09 -10.31 16 8 N -0.72 -10.51 4.96 -60.29 -0.30 -10.81 16 9 C 0.13 2.28 4.57 -4.04 -0.02 2.26 16 10 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 11 C -0.13 -2.22 8.05 37.16 0.30 -1.93 16 12 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 13 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 14 C -0.51 -13.54 7.65 -34.44 -0.26 -13.81 16 15 H 0.06 1.51 5.68 -52.48 -0.30 1.21 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 18 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 22 C -0.15 -1.43 9.78 -26.70 -0.26 -1.69 16 23 C -0.16 -1.44 9.93 -26.69 -0.26 -1.71 16 24 H 0.10 0.96 7.84 -52.49 -0.41 0.55 16 25 H 0.10 0.74 8.06 -52.49 -0.42 0.32 16 26 H 0.11 0.79 8.06 -52.49 -0.42 0.37 16 27 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 28 H 0.07 0.85 7.52 -51.93 -0.39 0.46 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.40 5.06 6.17 -40.82 -0.25 4.81 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 35 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 39 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.10 1.17 7.99 -51.93 -0.42 0.76 16 45 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -30.56 370.93 -8.20 -38.76 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.22 Total: 3.17 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -1.09 Total: -16.85 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.44 Total: -36.50 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.56 -8.20 -38.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359767834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.780 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds