Wall clock time and date at job start Tue Mar 31 2020 01:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50697 * 119.99925 * 2 1 4 4 C 1.52993 * 109.47722 * 124.72534 * 3 2 1 5 5 C 1.52995 * 109.47612 * 175.00008 * 4 3 2 6 6 C 1.50705 * 115.54993 * 65.26886 * 5 4 3 7 7 O 1.21275 * 119.99964 * 245.37810 * 6 5 4 8 8 N 1.34773 * 119.99607 * 65.38099 * 6 5 4 9 9 C 1.46506 * 119.99541 * 174.91739 * 8 6 5 10 10 C 1.53001 * 109.46808 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47274 * 299.99696 * 10 9 8 12 12 C 1.52996 * 109.47202 * 60.00070 * 10 9 8 13 13 C 1.53006 * 109.46716 * 180.02562 * 10 9 8 14 14 C 1.50701 * 109.46831 * 180.02562 * 13 10 9 15 15 H 1.08004 * 120.00103 * 359.97438 * 14 13 10 16 16 C 1.37875 * 119.99984 * 180.02562 * 14 13 10 17 17 N 1.31513 * 119.99956 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00146 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46805 * 89.99809 * 18 16 14 20 20 H 1.48500 * 109.47301 * 209.99621 * 18 16 14 21 21 H 1.48490 * 109.47109 * 329.99865 * 18 16 14 22 22 C 1.52996 * 117.49865 * 279.59803 * 5 4 3 23 23 C 1.53006 * 117.49883 * 210.93860 * 5 4 3 24 24 H 1.07998 * 119.99637 * 0.28133 * 1 2 3 25 25 H 1.07997 * 119.99973 * 180.28106 * 1 2 3 26 26 H 1.07998 * 119.99637 * 179.71867 * 2 1 3 27 27 H 1.09007 * 109.47014 * 244.72268 * 3 2 1 28 28 H 1.08997 * 109.47158 * 4.71834 * 3 2 1 29 29 H 1.09004 * 109.46956 * 294.99933 * 4 3 2 30 30 H 1.09000 * 109.47496 * 54.99481 * 4 3 2 31 31 H 0.96997 * 120.00435 * 354.91246 * 8 6 5 32 32 H 1.08999 * 109.47106 * 299.99671 * 9 8 6 33 33 H 1.09000 * 109.47166 * 60.00133 * 9 8 6 34 34 H 1.08998 * 109.47125 * 60.00586 * 11 10 9 35 35 H 1.09001 * 109.46825 * 180.02562 * 11 10 9 36 36 H 1.08995 * 109.47356 * 300.00334 * 11 10 9 37 37 H 1.08999 * 109.47048 * 59.99672 * 12 10 9 38 38 H 1.09001 * 109.47293 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.47464 * 299.99948 * 12 10 9 40 40 H 1.09000 * 109.47168 * 299.99529 * 13 10 9 41 41 H 1.08995 * 109.47210 * 60.00097 * 13 10 9 42 42 H 0.97000 * 120.00106 * 180.02562 * 17 16 14 43 43 H 1.09001 * 117.50062 * 0.02562 * 22 5 4 44 44 H 1.08997 * 117.49910 * 145.01562 * 22 5 4 45 45 H 1.09003 * 117.49576 * 214.97826 * 23 5 4 46 46 H 1.08994 * 117.49696 * 359.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0302 1.3361 1.1855 5 6 3.8829 2.6044 1.1154 6 6 3.1334 3.9015 1.2801 7 8 3.0686 4.6857 0.3574 8 7 2.5354 4.1898 2.4530 9 6 1.9026 5.4962 2.6508 10 6 1.3023 5.5645 4.0565 11 6 0.2550 4.4609 4.2180 12 6 2.4102 5.3721 5.0940 13 6 0.6409 6.9286 4.2628 14 6 0.0502 6.9961 5.6476 15 1 0.1374 6.1504 6.3137 16 6 -0.6025 8.1370 6.0638 17 7 -0.7092 9.1666 5.2526 18 14 -1.3353 8.2205 7.7801 19 1 -0.3221 8.7543 8.7255 20 1 -2.5213 9.1141 7.7690 21 1 -1.7450 6.8595 8.2100 22 6 5.0826 2.5974 0.1659 23 6 5.3034 2.5327 1.6793 24 1 -0.5399 0.9353 -0.0046 25 1 -0.5400 -0.9353 0.0046 26 1 1.8500 -0.9353 0.0046 27 1 2.6253 1.4003 -0.9293 28 1 1.3582 2.1318 0.0845 29 1 2.4634 1.3303 2.1166 30 1 3.6780 0.4602 1.1491 31 1 2.5239 3.5323 3.1661 32 1 2.6486 6.2825 2.5353 33 1 1.1130 5.6331 1.9119 34 1 0.7258 3.4889 4.0709 35 1 -0.1729 4.5098 5.2193 36 1 -0.5342 4.5979 3.4789 37 1 3.1563 6.1583 4.9789 38 1 1.9826 5.4211 6.0955 39 1 2.8810 4.4001 4.9469 40 1 1.3867 7.7152 4.1477 41 1 -0.1484 7.0653 3.5237 42 1 -1.1680 9.9694 5.5455 43 1 5.2642 1.6894 -0.4091 44 1 5.3301 3.5310 -0.3393 45 1 5.6960 3.4238 2.1691 46 1 5.6302 1.5821 2.1006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359767834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:35 Heat of formation + Delta-G solvation = -42.994654 kcal Electronic energy + Delta-G solvation = -22271.226594 eV Core-core repulsion = 19160.265481 eV Total energy + Delta-G solvation = -3110.961114 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.31897 -39.06699 -37.83792 -35.84971 -35.24007 -33.89585 -31.03054 -29.17640 -28.00170 -27.97953 -25.69157 -24.74344 -23.50121 -23.05512 -20.73801 -20.60960 -19.54043 -18.38422 -17.80658 -17.02038 -16.60616 -16.44378 -16.19518 -15.75257 -15.49969 -14.84358 -14.78948 -14.59881 -14.36498 -13.96016 -13.94235 -13.76168 -13.47884 -13.14128 -12.87673 -12.72814 -12.60787 -12.40088 -12.35388 -12.24023 -12.09741 -11.99501 -11.96618 -11.55755 -11.31099 -11.18728 -10.98768 -10.88506 -10.65924 -10.52126 -10.16790 -10.07076 -8.14559 -6.22736 1.42190 1.42442 1.43021 1.53426 1.58296 2.17054 2.44662 2.77494 3.19968 3.58481 3.76496 3.87614 3.95200 4.00404 4.06042 4.12737 4.20536 4.37766 4.49936 4.58827 4.67241 4.69021 4.72680 4.75326 4.78745 4.94259 4.99171 5.02491 5.06156 5.08854 5.10781 5.16906 5.25042 5.29772 5.38683 5.45874 5.48245 5.51792 5.56017 5.76227 5.78343 5.88791 5.93816 6.29160 6.58984 6.92404 7.26032 7.45286 8.98115 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.021484 B = 0.003714 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.997177 B = 7536.659346 C = 8135.033334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.095 4.095 4 C -0.062 4.062 5 C -0.169 4.169 6 C 0.541 3.459 7 O -0.592 6.592 8 N -0.704 5.704 9 C 0.141 3.859 10 C -0.064 4.064 11 C -0.120 4.120 12 C -0.121 4.121 13 C 0.040 3.960 14 C -0.514 4.514 15 H 0.074 0.926 16 C -0.005 4.005 17 N -0.939 5.939 18 Si 0.959 3.041 19 H -0.275 1.275 20 H -0.290 1.290 21 H -0.259 1.259 22 C -0.148 4.148 23 C -0.138 4.138 24 H 0.080 0.920 25 H 0.112 0.888 26 H 0.132 0.868 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.413 0.587 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.034 0.966 37 H 0.037 0.963 38 H 0.057 0.943 39 H 0.070 0.930 40 H -0.015 1.015 41 H -0.016 1.016 42 H 0.260 0.740 43 H 0.128 0.872 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.261 -21.968 -5.774 24.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.168 4.168 3 C -0.133 4.133 4 C -0.099 4.099 5 C -0.172 4.172 6 C 0.328 3.672 7 O -0.472 6.472 8 N -0.355 5.355 9 C 0.017 3.983 10 C -0.064 4.064 11 C -0.178 4.178 12 C -0.178 4.178 13 C 0.003 3.997 14 C -0.552 4.552 15 H 0.092 0.908 16 C -0.202 4.202 17 N -0.581 5.581 18 Si 0.784 3.216 19 H -0.201 1.201 20 H -0.216 1.216 21 H -0.182 1.182 22 C -0.185 4.185 23 C -0.175 4.175 24 H 0.099 0.901 25 H 0.130 0.870 26 H 0.150 0.850 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.251 0.749 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.003 0.997 41 H 0.002 0.998 42 H 0.068 0.932 43 H 0.146 0.854 44 H 0.097 0.903 45 H 0.107 0.893 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.142 -21.232 -6.405 24.387 hybrid contribution -0.928 1.122 0.735 1.631 sum 9.214 -20.111 -5.670 22.836 Atomic orbital electron populations 1.24006 0.96520 1.01990 1.01757 1.23058 0.95884 0.98479 0.99352 1.20716 0.98007 0.95079 0.99453 1.21042 0.96679 0.93874 0.98345 1.21477 0.91313 0.93364 1.11035 1.20282 0.78042 0.87386 0.81477 1.90667 1.62570 1.52389 1.41609 1.45938 1.56237 1.17161 1.16212 1.21212 0.95688 0.84432 0.97003 1.20700 0.96153 0.97214 0.92334 1.21681 0.97584 0.96697 1.01807 1.21685 0.96637 1.00611 0.98851 1.18970 0.93683 0.91272 0.95825 1.21589 1.34001 0.99956 0.99614 0.90823 1.25960 0.97172 0.95673 1.01394 1.70127 1.44665 1.05334 1.37944 0.85529 0.77737 0.78466 0.79829 1.20081 1.21610 1.18245 1.23062 0.97734 1.04177 0.93549 1.23237 0.92936 1.05156 0.96151 0.90114 0.87021 0.85012 0.90826 0.94547 0.90633 0.87553 0.74925 0.93729 0.94081 0.91282 0.92388 0.94688 0.94420 0.92409 0.91111 0.99653 0.99800 0.93173 0.85385 0.90313 0.89257 0.84486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.51 14.32 67.77 0.97 -2.54 16 2 C -0.15 -2.32 9.52 25.64 0.24 -2.08 16 3 C -0.10 -1.77 5.46 29.84 0.16 -1.61 16 4 C -0.06 -0.92 5.07 30.59 0.16 -0.76 16 5 C -0.17 -3.30 1.90 -52.93 -0.10 -3.40 16 6 C 0.54 16.15 6.57 87.66 0.58 16.73 16 7 O -0.59 -23.57 16.70 -3.02 -0.05 -23.62 16 8 N -0.70 -20.11 4.96 -463.05 -2.29 -22.40 16 9 C 0.14 5.21 4.57 86.38 0.39 5.60 16 10 C -0.06 -2.43 0.54 -52.18 -0.03 -2.46 16 11 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 12 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 13 C 0.04 2.06 4.04 29.85 0.12 2.19 16 14 C -0.51 -27.61 7.65 25.60 0.20 -27.42 16 15 H 0.07 3.69 5.68 -2.91 -0.02 3.67 16 16 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 17 N -0.94 -57.53 13.29 21.45 0.28 -57.24 16 18 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 22 C -0.15 -2.56 9.78 30.62 0.30 -2.27 16 23 C -0.14 -1.99 9.93 30.62 0.30 -1.69 16 24 H 0.08 1.62 7.84 -2.91 -0.02 1.59 16 25 H 0.11 1.51 8.06 -2.91 -0.02 1.49 16 26 H 0.13 1.41 8.06 -2.91 -0.02 1.38 16 27 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.04 0.90 7.52 -2.39 -0.02 0.88 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.11 0.95 8.09 -2.39 -0.02 0.93 16 31 H 0.41 9.31 6.17 -92.71 -0.57 8.73 16 32 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 1.79 6.86 -2.39 -0.02 1.77 16 35 H 0.06 2.10 6.62 -2.39 -0.02 2.08 16 36 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 2.06 6.62 -2.39 -0.02 2.04 16 39 H 0.07 1.77 6.86 -2.39 -0.02 1.76 16 40 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 41 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 42 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 43 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.08 1.77 7.99 -2.39 -0.02 1.75 16 45 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -70.63 370.93 5.24 -65.39 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.36 Total: 18.76 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 4.92 Total: -26.51 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -2.01 Total: -79.64 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.05 Total: -23.62 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -70.63 5.24 -65.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359767834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.397 kcal (2) G-P(sol) polarization free energy of solvation -70.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds