Wall clock time and date at job start Tue Mar 31 2020 01:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47144 * 2 1 4 4 C 1.53000 * 109.46825 * 240.00310 * 2 1 3 5 5 C 1.53000 * 109.47073 * 185.00157 * 4 2 1 6 6 H 1.09001 * 115.55071 * 29.27558 * 5 4 2 7 7 C 1.53000 * 117.49758 * 243.60786 * 5 4 2 8 8 C 1.52996 * 59.99992 * 252.50905 * 7 5 4 9 9 H 1.08998 * 117.50050 * 107.48534 * 8 7 5 10 10 C 1.50700 * 117.49826 * 252.51108 * 8 7 5 11 11 O 1.21290 * 119.99953 * 68.62019 * 10 8 7 12 12 N 1.34778 * 120.00065 * 248.62273 * 10 8 7 13 13 C 1.37097 * 119.99934 * 180.02562 * 12 10 8 14 14 H 1.08002 * 119.99999 * 141.74352 * 13 12 10 15 15 C 1.38947 * 120.00205 * 321.73733 * 13 12 10 16 16 N 1.31409 * 120.00147 * 156.33583 * 15 13 12 17 17 Si 1.86810 * 119.99897 * 336.33997 * 15 13 12 18 18 H 1.48504 * 109.46857 * 95.27321 * 17 15 13 19 19 H 1.48499 * 109.46984 * 215.27275 * 17 15 13 20 20 H 1.48497 * 109.46948 * 335.27309 * 17 15 13 21 21 C 1.46496 * 119.99808 * 359.97438 * 12 10 8 22 22 C 1.54267 * 110.03144 * 242.77991 * 21 12 10 23 23 C 1.54973 * 104.15969 * 217.13642 * 22 21 12 24 24 C 1.54890 * 102.77592 * 37.88793 * 23 22 21 25 25 C 1.53879 * 110.03314 * 125.56550 * 21 12 10 26 26 H 1.08994 * 109.47465 * 59.99676 * 1 2 3 27 27 H 1.09001 * 109.47198 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46803 * 299.99943 * 1 2 3 29 29 H 1.09001 * 109.47134 * 120.00224 * 2 1 3 30 30 H 1.09000 * 109.47079 * 300.00884 * 3 2 1 31 31 H 1.09007 * 109.47224 * 60.00315 * 3 2 1 32 32 H 1.08998 * 109.47078 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47154 * 304.99575 * 4 2 1 34 34 H 1.08996 * 109.47131 * 65.00029 * 4 2 1 35 35 H 1.09004 * 117.49838 * 0.02562 * 7 5 4 36 36 H 1.08994 * 117.49851 * 144.99078 * 7 5 4 37 37 H 0.97005 * 119.99960 * 180.02562 * 16 15 13 38 38 H 1.09004 * 110.02126 * 4.17380 * 21 12 10 39 39 H 1.08996 * 110.48800 * 335.78212 * 22 21 12 40 40 H 1.09002 * 110.48440 * 98.42840 * 22 21 12 41 41 H 1.09000 * 110.71622 * 279.57391 * 23 22 21 42 42 H 1.08993 * 110.76241 * 156.22427 * 23 22 21 43 43 H 1.08994 * 110.48598 * 203.40445 * 24 23 22 44 44 H 1.08998 * 110.48486 * 80.75961 * 24 23 22 45 45 H 1.09005 * 110.02939 * 238.57092 * 25 21 12 46 46 H 1.08996 * 110.03066 * 359.97438 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.8311 -1.1881 6 1 3.9928 -0.8796 -0.1868 7 6 4.3695 -0.1016 -2.2657 8 6 4.2607 -1.6274 -2.2937 9 1 3.6321 -2.0731 -3.0646 10 6 5.4856 -2.4194 -1.9151 11 8 5.8844 -2.4090 -0.7697 12 7 6.1381 -3.1391 -2.8494 13 6 7.2522 -3.8600 -2.5048 14 1 7.4235 -4.8319 -2.9436 15 6 8.1610 -3.3402 -1.5914 16 7 8.9433 -4.1475 -0.9108 17 14 8.2707 -1.4937 -1.3305 18 1 7.4305 -1.1071 -0.1687 19 1 9.6822 -1.1138 -1.0689 20 1 7.7866 -0.7924 -2.5467 21 6 5.6561 -3.1520 -4.2327 22 6 5.2373 -4.5818 -4.6331 23 6 5.6763 -4.7046 -6.1142 24 6 7.0200 -3.9347 -6.1382 25 6 6.7888 -2.7405 -5.1895 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8934 -0.5139 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 1.6768 1.9563 0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6054 -1.7197 -1.2952 34 1 1.7516 -0.1582 -2.1370 35 1 3.8125 0.4570 -3.0180 36 1 5.3267 0.3298 -1.9734 37 1 9.5775 -3.7846 -0.2728 38 1 4.8112 -2.4717 -4.3399 39 1 5.7568 -5.3175 -4.0192 40 1 4.1577 -4.7023 -4.5431 41 1 4.9480 -4.2313 -6.7728 42 1 5.8246 -5.7492 -6.3879 43 1 7.2407 -3.5839 -7.1463 44 1 7.8278 -4.5656 -5.7675 45 1 6.4933 -1.8609 -5.7615 46 1 7.6970 -2.5308 -4.6245 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387804194.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:16 Heat of formation + Delta-G solvation = -43.082841 kcal Electronic energy + Delta-G solvation = -23159.237178 eV Core-core repulsion = 20048.272241 eV Total energy + Delta-G solvation = -3110.964938 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.30517 -39.17166 -38.18102 -35.90400 -35.28069 -33.88362 -29.48497 -28.93089 -28.49707 -27.94419 -27.10434 -24.17812 -22.26022 -21.50067 -21.46829 -20.93648 -20.48008 -18.78443 -17.88143 -17.20778 -16.45521 -16.06378 -15.85221 -15.70924 -15.56607 -14.99518 -14.84018 -14.61277 -14.20954 -14.10396 -13.81924 -13.46971 -13.31509 -12.98654 -12.83551 -12.71039 -12.42292 -12.41582 -12.31116 -12.08742 -11.87438 -11.83029 -11.81450 -11.77316 -11.49583 -11.42961 -11.30417 -11.07158 -10.75605 -10.65412 -10.31028 -9.53726 -8.42953 -6.07471 1.15166 1.29079 1.45357 1.85804 2.42795 2.61658 2.96487 3.09255 3.62252 3.79580 3.83061 3.87826 3.96279 4.09530 4.16843 4.22800 4.27671 4.33733 4.57858 4.59817 4.66494 4.74579 4.75327 4.77742 4.84783 4.86932 4.87896 4.92851 4.99363 5.02689 5.09729 5.11109 5.16613 5.22165 5.28870 5.34037 5.42881 5.43156 5.51055 5.53053 5.56930 5.60468 5.72456 5.90714 6.80766 6.95346 7.41654 7.95400 8.66037 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015887 B = 0.006107 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.064927 B = 4583.644069 C = 5673.351800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.073 4.073 5 C -0.114 4.114 6 H 0.076 0.924 7 C -0.143 4.143 8 C -0.186 4.186 9 H 0.148 0.852 10 C 0.460 3.540 11 O -0.599 6.599 12 N -0.462 5.462 13 C -0.328 4.328 14 H 0.069 0.931 15 C 0.045 3.955 16 N -0.910 5.910 17 Si 0.957 3.043 18 H -0.281 1.281 19 H -0.312 1.312 20 H -0.263 1.263 21 C 0.119 3.881 22 C -0.132 4.132 23 C -0.108 4.108 24 C -0.116 4.116 25 C -0.131 4.131 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.142 0.858 36 H 0.064 0.936 37 H 0.269 0.731 38 H 0.109 0.891 39 H 0.040 0.960 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.040 0.960 45 H 0.085 0.915 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.552 9.071 -9.886 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 C -0.202 4.202 4 C -0.110 4.110 5 C -0.133 4.133 6 H 0.094 0.906 7 C -0.180 4.180 8 C -0.207 4.207 9 H 0.165 0.835 10 C 0.252 3.748 11 O -0.485 6.485 12 N -0.183 5.183 13 C -0.455 4.455 14 H 0.087 0.913 15 C -0.158 4.158 16 N -0.548 5.548 17 Si 0.789 3.211 18 H -0.209 1.209 19 H -0.242 1.242 20 H -0.188 1.188 21 C 0.016 3.984 22 C -0.171 4.171 23 C -0.145 4.145 24 C -0.154 4.154 25 C -0.169 4.169 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.160 0.840 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.126 0.874 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.059 0.941 45 H 0.104 0.896 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -16.211 9.011 -9.248 20.725 hybrid contribution 1.252 0.149 0.995 1.606 sum -14.960 9.159 -8.253 19.386 Atomic orbital electron populations 1.21793 0.93630 1.01998 1.02428 1.21116 0.96676 0.96490 0.97369 1.21824 1.00431 0.95662 1.02233 1.21252 0.89369 1.01144 0.99201 1.22343 0.95958 1.01261 0.93740 0.90585 1.23138 1.01445 0.91017 1.02447 1.22323 0.98239 0.94720 1.05393 0.83488 1.20491 0.85497 0.83830 0.85022 1.90475 1.69181 1.66823 1.22040 1.43943 1.23928 1.42932 1.07449 1.18504 0.99922 1.00445 1.26622 0.91325 1.25833 0.94261 1.01672 0.94079 1.69881 1.24556 1.36980 1.23404 0.85648 0.73959 0.82409 0.79109 1.20889 1.24162 1.18752 1.22211 0.97183 0.98139 0.80912 1.22712 1.00955 0.95968 0.97433 1.22426 0.96750 1.00554 0.94808 1.22262 0.97787 0.96241 0.99116 1.22428 0.98301 0.99260 0.96931 0.91471 0.92650 0.92353 0.93123 0.91338 0.92550 0.94122 0.91285 0.89206 0.83977 0.91770 0.92182 0.87366 0.94108 0.90135 0.88695 0.91186 0.89530 0.94141 0.89614 0.94084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.19 71.98 0.66 -1.54 16 2 C -0.10 -2.00 2.88 -10.79 -0.03 -2.03 16 3 C -0.14 -2.79 9.01 71.98 0.65 -2.15 16 4 C -0.07 -1.57 4.96 30.59 0.15 -1.41 16 5 C -0.11 -3.53 4.24 -10.79 -0.05 -3.57 16 6 H 0.08 2.96 7.60 -2.39 -0.02 2.94 16 7 C -0.14 -4.18 9.88 30.59 0.30 -3.88 16 8 C -0.19 -6.37 4.68 -11.54 -0.05 -6.42 16 9 H 0.15 3.96 6.73 -2.39 -0.02 3.95 16 10 C 0.46 22.31 5.75 87.66 0.50 22.81 16 11 O -0.60 -35.21 11.38 -3.06 -0.03 -35.25 16 12 N -0.46 -22.26 2.18 -609.38 -1.33 -23.59 16 13 C -0.33 -19.08 8.03 84.04 0.68 -18.40 16 14 H 0.07 4.26 7.10 -2.91 -0.02 4.24 16 15 C 0.05 2.81 4.74 84.93 0.40 3.22 16 16 N -0.91 -59.51 13.96 21.66 0.30 -59.21 16 17 Si 0.96 53.43 24.86 68.60 1.71 55.13 16 18 H -0.28 -16.80 6.20 99.48 0.62 -16.19 16 19 H -0.31 -17.00 7.11 99.48 0.71 -16.29 16 20 H -0.26 -13.58 7.11 99.48 0.71 -12.87 16 21 C 0.12 4.20 3.16 45.72 0.14 4.34 16 22 C -0.13 -4.20 6.43 31.70 0.20 -4.00 16 23 C -0.11 -2.64 6.91 31.92 0.22 -2.41 16 24 C -0.12 -3.31 6.83 31.67 0.22 -3.10 16 25 C -0.13 -4.39 6.24 31.32 0.20 -4.20 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.04 0.94 7.38 -2.39 -0.02 0.92 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.09 1.49 7.87 -2.39 -0.02 1.48 16 35 H 0.14 2.84 8.03 -2.38 -0.02 2.82 16 36 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.27 16.75 8.31 -92.70 -0.77 15.98 16 38 H 0.11 3.10 5.56 -2.38 -0.01 3.09 16 39 H 0.04 1.63 6.66 -2.39 -0.02 1.62 16 40 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 46 H 0.04 1.73 7.16 -2.39 -0.02 1.72 16 Total: -1.00 -77.52 352.12 5.67 -71.85 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.83 Total: 13.81 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 4.20 Total: -22.75 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -1.03 Total: -82.80 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.03 Total: -35.25 kcal Atomic # 14 Polarization: 53.43 SS G_CDS: 1.71 Total: 55.13 kcal Total: -77.52 5.67 -71.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387804194.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.765 kcal (2) G-P(sol) polarization free energy of solvation -77.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds