Wall clock time and date at job start Tue Mar 31 2020 00:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47304 * 2 1 4 4 C 1.50696 * 110.43125 * 294.48811 * 3 2 1 5 5 O 1.21284 * 120.00271 * 112.38379 * 4 3 2 6 6 N 1.34774 * 119.99912 * 292.37977 * 4 3 2 7 7 C 1.46922 * 120.63236 * 4.60142 * 6 4 3 8 8 C 1.53192 * 108.77715 * 126.41219 * 7 6 4 9 9 C 1.53044 * 109.31460 * 54.63438 * 8 7 6 10 10 C 1.53040 * 109.53709 * 298.63531 * 9 8 7 11 11 H 1.09001 * 109.50038 * 301.41311 * 10 9 8 12 12 C 1.50700 * 109.52440 * 181.32809 * 10 9 8 13 13 H 1.08004 * 120.00215 * 265.30144 * 12 10 9 14 14 C 1.37878 * 119.99526 * 85.30284 * 12 10 9 15 15 N 1.31518 * 119.99843 * 185.05462 * 14 12 10 16 16 Si 1.86800 * 120.00352 * 5.05050 * 14 12 10 17 17 H 1.48499 * 109.47123 * 94.85315 * 16 14 12 18 18 H 1.48500 * 109.47250 * 214.85554 * 16 14 12 19 19 H 1.48502 * 109.47035 * 334.85075 * 16 14 12 20 20 C 1.46931 * 120.62945 * 184.61857 * 6 4 3 21 21 C 1.54890 * 110.48606 * 57.02657 * 3 2 1 22 22 C 1.55231 * 102.58997 * 156.67870 * 21 3 2 23 23 C 1.54269 * 104.23019 * 322.08403 * 22 21 3 24 24 C 1.53879 * 106.59864 * 23.61288 * 23 22 21 25 25 H 1.08996 * 109.47167 * 184.88673 * 1 2 3 26 26 H 1.08999 * 109.47385 * 304.89009 * 1 2 3 27 27 H 1.09005 * 109.47185 * 64.88331 * 1 2 3 28 28 H 1.09005 * 109.47404 * 240.00252 * 2 1 3 29 29 H 1.09007 * 109.47134 * 119.99626 * 2 1 3 30 30 H 1.08998 * 109.58818 * 246.19492 * 7 6 4 31 31 H 1.08999 * 109.58381 * 6.62401 * 7 6 4 32 32 H 1.09001 * 109.50063 * 174.59180 * 8 7 6 33 33 H 1.08999 * 109.49564 * 294.68606 * 8 7 6 34 34 H 1.09001 * 109.45912 * 178.61601 * 9 8 7 35 35 H 1.09002 * 109.45602 * 58.65548 * 9 8 7 36 36 H 0.96994 * 119.99964 * 179.97438 * 15 14 12 37 37 H 1.09007 * 109.58345 * 113.80660 * 20 6 4 38 38 H 1.08997 * 109.70586 * 353.45093 * 20 6 4 39 39 H 1.09000 * 110.75811 * 275.07357 * 21 3 2 40 40 H 1.09002 * 110.75548 * 38.43566 * 21 3 2 41 41 H 1.08996 * 110.46907 * 203.39658 * 22 21 3 42 42 H 1.08999 * 110.58444 * 80.82655 * 22 21 3 43 43 H 1.09001 * 110.03257 * 264.32808 * 23 22 21 44 44 H 1.09002 * 110.02992 * 142.89320 * 23 22 21 45 45 H 1.08998 * 110.02925 * 240.71808 * 24 23 22 46 46 H 1.08996 * 110.03393 * 119.28312 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6635 2.1337 -1.2851 5 8 0.8583 3.0405 -1.2727 6 7 2.2217 1.7441 -2.4483 7 6 3.1214 0.5835 -2.4953 8 6 2.6133 -0.3915 -3.5620 9 6 2.4694 0.3465 -4.8950 10 6 1.4475 1.4760 -4.7469 11 1 0.4894 1.0611 -4.4335 12 6 1.2819 2.1818 -6.0681 13 1 1.8560 3.0715 -6.2808 14 6 0.3974 1.6916 -7.0053 15 7 0.3248 2.2477 -8.1950 16 14 -0.6977 0.2377 -6.5856 17 1 -2.0166 0.7312 -6.1141 18 1 -0.8874 -0.6043 -7.7940 19 1 -0.0597 -0.5698 -5.5150 20 6 1.9424 2.4722 -3.6936 21 6 1.4762 2.2169 1.2172 22 6 2.5117 3.3586 1.4011 23 6 3.8689 2.6929 1.0933 24 6 3.5690 1.4746 0.2024 25 1 -0.3633 -1.0239 0.0875 26 1 -0.3634 0.5878 0.8429 27 1 -0.3634 0.4362 -0.9305 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 4.1288 0.9121 -2.7509 31 1 3.1314 0.0895 -1.5237 32 1 3.3237 -1.2105 -3.6744 33 1 1.6443 -0.7888 -3.2597 34 1 2.1314 -0.3509 -5.6615 35 1 3.4335 0.7647 -5.1844 36 1 -0.2972 1.9027 -8.8544 37 1 2.8537 2.9548 -4.0469 38 1 1.1756 3.2259 -3.5146 39 1 0.4883 2.6201 0.9947 40 1 1.4441 1.5784 2.1001 41 1 2.4924 3.7294 2.4259 42 1 2.3168 4.1695 0.6992 43 1 4.3450 2.3702 2.0193 44 1 4.5163 3.3921 0.5641 45 1 3.8995 0.5607 0.6961 46 1 4.0708 1.5826 -0.7591 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397689536.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:21 Heat of formation + Delta-G solvation = -55.100394 kcal Electronic energy + Delta-G solvation = -23971.720776 eV Core-core repulsion = 20860.234718 eV Total energy + Delta-G solvation = -3111.486058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.79202 -37.76314 -36.55495 -33.73042 -33.02845 -31.74737 -30.61062 -28.78774 -27.88306 -25.15775 -25.05843 -22.96224 -21.75618 -21.46751 -20.41842 -19.29453 -18.20166 -16.88411 -16.17825 -15.83817 -15.56495 -14.96849 -14.57364 -14.29647 -13.94866 -13.74004 -13.36782 -13.24343 -13.11204 -12.65763 -12.55930 -12.51412 -12.21412 -12.03799 -11.52918 -11.46184 -11.19428 -11.07608 -11.00704 -10.96131 -10.69673 -10.63089 -10.49139 -10.38379 -10.29564 -10.03487 -9.80189 -9.58364 -9.21456 -8.93374 -8.53774 -8.01646 -6.09814 -4.09207 3.03414 3.27730 3.36865 3.39123 3.46689 4.37103 4.41175 4.53096 4.58844 4.89742 5.08731 5.13677 5.19063 5.22753 5.30413 5.37741 5.41057 5.48722 5.58956 5.60642 5.66321 5.76824 5.82368 5.83488 5.87681 5.94198 5.97538 6.05189 6.10488 6.17648 6.18966 6.21617 6.26533 6.29925 6.39305 6.45233 6.60482 6.74054 6.86457 6.94625 7.27424 7.44149 7.74955 7.93949 8.47935 8.64062 8.94817 9.53418 11.03256 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024981 B = 0.005462 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.597055 B = 5125.172750 C = 5242.014462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.083 4.083 4 C 0.527 3.473 5 O -0.545 6.545 6 N -0.606 5.606 7 C 0.097 3.903 8 C -0.141 4.141 9 C -0.112 4.112 10 C 0.007 3.993 11 H 0.032 0.968 12 C -0.512 4.512 13 H 0.074 0.926 14 C 0.074 3.926 15 N -0.898 5.898 16 Si 0.873 3.127 17 H -0.279 1.279 18 H -0.289 1.289 19 H -0.259 1.259 20 C 0.125 3.875 21 C -0.100 4.100 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.122 4.122 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.264 0.736 37 H 0.058 0.942 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.801 -6.025 19.048 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.087 4.087 4 C 0.314 3.686 5 O -0.422 6.422 6 N -0.338 5.338 7 C -0.026 4.026 8 C -0.179 4.179 9 C -0.150 4.150 10 C -0.013 4.013 11 H 0.050 0.950 12 C -0.551 4.551 13 H 0.092 0.908 14 C -0.128 4.128 15 N -0.536 5.536 16 Si 0.700 3.300 17 H -0.205 1.205 18 H -0.215 1.215 19 H -0.184 1.184 20 C 0.004 3.996 21 C -0.138 4.138 22 C -0.163 4.163 23 C -0.161 4.161 24 C -0.160 4.160 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.290 -5.534 18.849 20.627 hybrid contribution -0.558 -0.875 -0.132 1.046 sum 5.733 -6.409 18.717 20.598 Atomic orbital electron populations 1.21810 0.95205 1.01499 1.02712 1.21847 0.96922 0.93908 1.02868 1.21649 0.96533 0.96259 0.94215 1.20218 0.80484 0.83279 0.84575 1.90644 1.33877 1.31192 1.86513 1.48266 1.46717 1.30302 1.08525 1.22099 0.93154 0.87125 1.00213 1.22058 1.00803 0.97642 0.97403 1.21874 1.00797 0.98341 0.94017 1.19448 0.94470 0.92697 0.94685 0.94952 1.20884 1.24183 1.12563 0.97431 0.90789 1.24993 0.96645 0.96465 0.94667 1.69911 1.37114 1.41876 1.04712 0.86923 0.81493 0.83433 0.78131 1.20482 1.21497 1.18361 1.21858 1.00664 0.95470 0.81649 1.22468 0.99811 0.96203 0.95269 1.22414 0.94263 0.98404 1.01217 1.22133 0.97755 0.96981 0.99251 1.22492 0.93637 0.98955 1.00910 0.92696 0.92238 0.92401 0.90407 0.91091 0.91842 0.89256 0.91947 0.92313 0.92730 0.92629 0.92659 0.92382 0.89695 0.90025 0.91210 0.91875 0.91146 0.91889 0.91947 0.90885 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.49 37.16 0.35 -1.54 16 2 C -0.12 -1.32 4.57 -26.73 -0.12 -1.44 16 3 C -0.08 -1.05 0.27 -154.00 -0.04 -1.10 16 4 C 0.53 9.06 5.43 -10.99 -0.06 9.00 16 5 O -0.54 -11.37 14.96 5.55 0.08 -11.28 16 6 N -0.61 -10.55 2.90 -172.77 -0.50 -11.05 16 7 C 0.10 1.36 3.92 -3.71 -0.01 1.34 16 8 C -0.14 -2.20 5.96 -26.61 -0.16 -2.35 16 9 C -0.11 -2.24 4.80 -26.69 -0.13 -2.36 16 10 C 0.01 0.15 1.78 -91.65 -0.16 -0.01 16 11 H 0.03 0.79 5.71 -51.93 -0.30 0.50 16 12 C -0.51 -14.13 8.87 -34.44 -0.31 -14.44 16 13 H 0.07 2.21 8.05 -52.48 -0.42 1.79 16 14 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 15 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 16 Si 0.87 21.54 26.37 -169.99 -4.48 17.06 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 19 H -0.26 -6.03 5.92 56.52 0.33 -5.69 16 20 C 0.12 2.61 5.70 -3.71 -0.02 2.59 16 21 C -0.10 -1.19 4.31 -24.55 -0.11 -1.30 16 22 C -0.13 -1.44 6.58 -24.89 -0.16 -1.60 16 23 C -0.12 -1.25 6.80 -25.61 -0.17 -1.43 16 24 C -0.12 -1.29 4.70 -25.61 -0.12 -1.41 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.69 6.82 -51.93 -0.35 0.33 16 27 H 0.06 0.88 7.61 -51.93 -0.40 0.49 16 28 H 0.08 0.89 5.15 -51.93 -0.27 0.62 16 29 H 0.07 0.63 8.01 -51.93 -0.42 0.22 16 30 H 0.06 0.82 7.92 -51.93 -0.41 0.41 16 31 H 0.09 1.02 3.16 -51.93 -0.16 0.86 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 1.16 6.82 -51.93 -0.35 0.80 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 38 H 0.08 1.96 7.01 -51.93 -0.36 1.60 16 39 H 0.08 1.14 7.02 -51.93 -0.36 0.78 16 40 H 0.07 0.69 8.06 -51.93 -0.42 0.27 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.62 7.75 -51.93 -0.40 0.22 16 46 H 0.08 0.85 5.48 -51.93 -0.28 0.57 16 LS Contribution 333.03 15.07 5.02 5.02 Total: -1.00 -31.19 333.03 -8.35 -39.54 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.92 Total: 1.29 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -1.32 Total: -14.03 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.27 Total: -37.60 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.48 Total: 17.06 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.19 -8.35 -39.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397689536.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.558 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds